Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009282

Physical Location & Seq

Genomic Coordinates Reverse (-)

13850427 .. 13857080

Gene Structure 6654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2940 bp

ATGGAGGCGACTACTCCTCCGTCCGATTCTCCATCTATAAAACCCATAAACAAGTCCGTGGTCCACAGAATCTGCGCCGGCCAAGTGATCCTCGACCTCTCGGCCGCCGTCAAAGAATTGGTCGAGAACAGCCTCGACGCCGGCGCCACCACCATCGAGATCGCGCTCAAAGACTACGGCAAAGAGTGGTTCCAGGTCATCGATAACGGCTGCGGCATTTCGCCCAACAACTTCAAGGTCCTTGCCCTCAAGCACCACACTTCCAAACTCGCCGGATTCCCTGACCTCCAGTCTCTGACGACGTTCGGCTTCCGCGGCGAGGCCTTGAGCTCTCTGTGTGCTTTGGGGAATTTAACGGTGGAAACTAGGACCAAGTACGAGCAGGTCGCCACGCACTTGACTTTTGACCATTCCGGTGTGTTGGTAACGGAAAAGAAGACGGCGCGGCAGGTCGGCACCACCGTAACTGTTAAGAATCTGTTTGTGAATTTACCGGTGAGGTGCAAGGAGTTCAGTCGCAACATTCGGAAGGAGTATGGGAAGCTGGTTTCTCTATTGAATGCCTATGCTCTTATTGCGAAAGGGGTTCGGTTAGTCTGCACGAATGCCATAGGTAGAAATGCAAAGTCTGTGGTGCTTAAAACGCAAGGAAGTGGTTCACTTAAGGATAATATTGTAACATTGTTTGGGATGAGCACATTCACTTGTTTAGAGCCTGTGAGTATATCTGTATCTGATAGTTGCAAGGTTGATGGTTTCCTTTCCAAGTCGGGACAAGGTAGTGGTCGGAACATGGGAGATAGGCAGTTCTTTTTTGTGAATGGTCGACCTGTGGATATGCCTAAAATTACAAAGCTTGTGAATGAGTTGTATAGAGGGGCAAACTCCCAGCAGCATCCTATTGCCATATTGAATTTCACTGTTCCGACAAGAGCATGTGATGTCAATGTTACTCCTGATAAAAGGAAAGTGTTCTTTTCTGATGAGAGCTCCATACTTGTTGCCTTAAGGGAGGGTCTGCAGCAGATATATTCCACTAGTAATGCTCGTTACTCTGTTAATAAAGTGGAGGAGCCTGCCAAAGAAGCAGGCAGGTCTCAGTTGTGTTCACCTCATCAAAGTTCTCATAAACAATTAACTAGGGACGATGATGATGATGTTCCTGAAGAAGTTCGTCTGGCTGATAAAGCAGAGGAGGCTACAAAAGAAGGAGGCAGGTCTGAATTGTGTTTTCCTGGTCAGAGGTCTCATATGTTTCTGAAACAATCCTCTATAGATTCTGTACCTAAAGAAGTTAGTCCTGAGGATCACACTCCAGAAGGCGATGCTCCTCTGAAAGCTGCGGAAACTGATTCTGAAACTAATCATGATGAAGAAGGGTTTAGCCATGAAAATTCAATGGGGAAGGATTTTGCTTTAAGAGTACACAGCATTAAGAAGGTCCATGGAACTAGTCAATTGACAAAGAATCTCAGTAGTATGAAAGCCGATCGAATTGCAGCAAATGGAGATTCATGTAGTCATTCAAGCTCTGTACAAGCATCAATTAACCAGTTTGTGACTGTAACTAAAAGAAAACATGATAGTATTAGCACAGTCCTGTCTGAAATGCCTGTCCTAAGGAGCCAAAGTCTTCATTGTCAATCCAAGAATGACTTAATTGATGCTGTTTCAAAACCCCCACTTAGTCATCAGCAGATCAATGATTCTACTGAAGTTGATAATTCTGCTGAAGCTGGTGAGAATGAGACATCCAAATATTTTAGAGTAGATAGGATCCTCAACAAAATTAGAGTTCCATTTTCTCCTGGAGGCAAGATTGAGGGTGAAGGACATGGAGAAGGTTTACAGGCTCAACAGAAAGCAGTGCCTATTGCTGATATGGCACCAACTGCTTCACCCAGCAGGGATATTAGTCTGTCTGAAGATCTGCCAGCTGCATCACCTTCTTCTTGTATATTGTCGAATACTCCAAAGCCTTCTTCTGGTCTTATGATGTGTTCGACCTTGAGATTTAGTTTCCAGGACCTAAAGACAAGGAGGCAGCAAATATATTCTAGATTGCAATCAAGCATACCTGGAGTAAAAGCACAAAGGTGCTATACTGCTGCAACACTGGAGCTTTCTCAACCAGAAAATGAGGAGCGAAAAGCAAGGGCCTTAGCTGCAGCTACCACGGAGTTGGAAAGACTTTTCAGAAAAGAGGATTTTGGTAGAATGAAGGTGATTGGGCAATTCAATCTTGGCTTCATTATTGGGAAATTAGATCAAGATTTATTTATCGTAGATCAGCATGCAGCTGATGAGAAGTACAATTTTGAGCGCCTGTCACAATCTACCATCTTAAACCAACAGCCTTTGCTTAGGCCATTGAGGTTGGAGTTATCTCCTGAAGAAGAAGTTGTTGCTTCAATGCACATGGACGTAATCAGGAAAAATGGATTTTCTTTGGAAGAGGATCTACATGCTCCGCCTGGTCACCATTTTAAATTGAAAGCTGTTCCCTTCAGTAAAAACATAACTTTTGGAGTTGAAGATGTGAAGGATTTGATATCCACTCTTGCTGATAGTCATGGGGAATGCTCAATCATCGGTAGTTACAAGATGGACACTGTTGACTCCGTTTGCCCTTCTAGAGTTCGCGCAATGCTGGCATCACGTGCATGCAGATCATCTGTTATGATTGGAGATGCCCTCGGAAGAAATGAGATGCGGAAGATTCTTGAGCATCTGGCAGGTCTGAAGTCTCCTTGGAATTGCCCTCATGGCAGGCCAACCATGCGACATTTGATTGATTTGAAAACCATACACAGAACAGAACCCCGCTCCACATTGATAGAAGCAAAGAAGACGAAGAGGACTAAGCAGAGCGGCGAAAAGCTTCGGTCTCTCTCTCTCTCTCTTCTTCGCGATCCGAGGCTATTTTCCGGTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

980

Amino Acids

107.84

Weight (kDa)

8.51

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	31 - 87	2.4e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	34 - 136	4.3e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	227 - 344	9.9e-25	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	743 - 899	2.1e-25	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02460 AT4G02460 AT4G02460 AT4G02460
fragaria_vesca	FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510
malus_domestica	MD11G1305800.v1.1
prunus_persica	Prupe.8G259200_v2.0.a1 Prupe.8G259200_v2.0.a1
pyrus_communis	pycom11g26760
rosa_chinensis	RchiOBHm_Chr6g0293721
rosa_laevigata	RLG00000011929
rosa_roxburghii	Rroxscaffold_7G00173950
rosa_rugosa	Rorug06G0237600
rosa_samantha	Rh6AG350400 Rh6BG357900 Rh6CG364700 Rh6DG351600
rosa_wichuraiana	Rw6G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	5 cut(s)	373, 439, 1083, 1206, 2726
AccB1I	GGYRCC	3 cut(s)	143, 455, 1885
AccBSI	CCGCTC	2 cut(s)	2826, 2871
AccI	GTMKAC	1 cut(s)	826
AccII	CGCG	5 cut(s)	164, 315, 445, 2643, 2910
AclWI	GGATC	6 cut(s)	82, 1314, 1771, 1784, 2466, 2906
AcoI	YGGCCR	2 cut(s)	79, 102
AcsI	RAATTY	4 cut(s)	349, 487, 913, 1393
AcuI	CTGAAG	7 cut(s)	1185, 1734, 1752, 1944, 2412, 2491, 2762
AcvI	CACGTG	1 cut(s)	2660
AcyI	GRCGYC	2 cut(s)	138, 144
AfaI	GTAC	5 cut(s)	377, 1284, 1425, 1536, 2312
AfiI	CCNNNNNNNGG	2 cut(s)	319, 1985
AflII	CTTAAG	2 cut(s)	662, 1006
AgeI	ACCGGT	1 cut(s)	493
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	2 cut(s)	1037, 1451
AjnI	CCWGG	6 cut(s)	192, 1234, 1807, 2022, 2077, 2473
AjuI	GAANNNNNNNTTGG	2 cut(s)	1966, 1998
AleI	CACNNNNGTG	1 cut(s)	2095
Alw21I	GWGCWC	3 cut(s)	332, 698, 992
Alw26I	GTCTC	6 cut(s)	297, 1101, 1251, 1742, 2751, 2892
AlwI	GGATC	6 cut(s)	82, 1314, 1771, 1784, 2466, 2906
AlwNI	CAGNNNCTG	2 cut(s)	72, 295
AoxI	GGCC	6 cut(s)	79, 102, 321, 2157, 2366, 2771
ApoI	RAATTY	4 cut(s)	349, 487, 913, 1393
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	4 cut(s)	655, 971, 1170, 2880
AspLEI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
AspS9I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
AsuHPI	GGTGA	8 cut(s)	508, 1101, 1751, 1838, 1890, 1935, 2236, 2471
AvaII	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
AxyI	CCTNAGG	2 cut(s)	1302, 1619
BamHI	GGATCC	1 cut(s)	1776
BanI	GGYRCC	3 cut(s)	143, 455, 1885
BanII	GRGCYC	2 cut(s)	332, 992
BarI	GAAGNNNNNNTAC	2 cut(s)	2445, 2477
BbrPI	CACGTG	1 cut(s)	2660
BbsI	GAAGAC	3 cut(s)	443, 1625, 2855
Bbv12I	GWGCWC	3 cut(s)	332, 698, 992
BccI	CCATC	5 cut(s)	40, 161, 746, 2348, 2599
BceAI	ACGGC	4 cut(s)	92, 193, 223, 456
BcgI	CGANNNNNNTGC	2 cut(s)	1478, 1512
BciT130I	CCWGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
BcoDI	GTCTC	6 cut(s)	297, 1101, 1251, 1742, 2751, 2892
BcuI	ACTAGT	2 cut(s)	1037, 1451
BfaI	CTAG	6 cut(s)	366, 1038, 1140, 1452, 2058, 2634
BfmI	CTRYAG	3 cut(s)	1019, 1272, 2166
BfoI	RGCGCY	2 cut(s)	147, 2326
BfrI	CTTAAG	2 cut(s)	662, 1006
BfuAI	ACCTGC	5 cut(s)	373, 439, 1083, 1206, 2726
BglI	GCCNNNNNGGC	1 cut(s)	2766
BglII	AGATCT	1 cut(s)	1927
Bme1390I	CCNGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
Bme18I	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
BmiI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
BmrFI	CCNGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
BmsI	GCATC	9 cut(s)	904, 1315, 1550, 1654, 1949, 2663, 2680, 2700, 2737
BpiI	GAAGAC	3 cut(s)	443, 1625, 2855
BplI	GAGNNNNNCTC	2 cut(s)	2679, 2711
BpmI	CTGGAG	5 cut(s)	272, 1299, 1830, 2100, 2138
Bpu10I	CCTNAGC	2 cut(s)	2161, 2363
BpuEI	CTTGAG	4 cut(s)	233, 346, 2029, 2744
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	2660
BsaBI	GATNNNNATC	1 cut(s)	2065
BsaHI	GRCGYC	2 cut(s)	138, 144
BsaI	GGTCTC	3 cut(s)	1101, 1251, 2892
BsaJI	CCNNGG	7 cut(s)	57, 313, 1444, 2175, 2695, 2750, 2915
BsaWI	WCCGGW	3 cut(s)	413, 493, 2927
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 1615, 1645
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 1985
Bse118I	RCCGGY	3 cut(s)	77, 140, 493
Bse1I	ACTGG	3 cut(s)	289, 1552, 2121
Bse21I	CCTNAGG	2 cut(s)	1302, 1619
Bse3DI	GCAATG	1 cut(s)	2652
Bse8I	GATNNNNATC	1 cut(s)	2065
BseBI	CCWGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	7 cut(s)	57, 313, 1444, 2175, 2695, 2750, 2915
BseGI	GGATG	3 cut(s)	696, 895, 1751
BseJI	GATNNNNATC	1 cut(s)	2065
BseLI	CCNNNNNNNGG	2 cut(s)	319, 1985
BseMI	GCAATG	1 cut(s)	2652
BseMII	CTCAG	3 cut(s)	1112, 1293, 1486
BseNI	ACTGG	3 cut(s)	289, 1552, 2121
BseRI	GAGGAG	5 cut(s)	6, 1085, 1208, 1320, 2156
BseX3I	CGGCCG	1 cut(s)	102
BseYI	CCCAGC	2 cut(s)	888, 1901
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	5 cut(s)	164, 315, 445, 2643, 2910
Bsh1285I	CGRYCG	2 cut(s)	105, 1492
BshFI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
BshNI	GGYRCC	3 cut(s)	143, 455, 1885
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	105, 1492
BsiHKAI	GWGCWC	3 cut(s)	332, 698, 992
BsiSI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 2928
BslFI	GGGAC	2 cut(s)	786, 1157
BslI	CCNNNNNNNGG	2 cut(s)	319, 1985
BsmAI	GTCTC	6 cut(s)	297, 1101, 1251, 1742, 2751, 2892
BsmFI	GGGAC	2 cut(s)	786, 1157
BsmI	GAATGC	3 cut(s)	565, 610, 2585
BsnI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
Bso31I	GGTCTC	3 cut(s)	1101, 1251, 2892
Bsp1286I	GDGCHC	3 cut(s)	332, 698, 992
Bsp1407I	TGTACA	1 cut(s)	1534
Bsp19I	CCATGG	1 cut(s)	1444
Bsp68I	TCGCGA	1 cut(s)	2910
BspANI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
BspCNI	CTCAG	3 cut(s)	1111, 1294, 1485
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	5 cut(s)	164, 315, 445, 2643, 2910
BspHI	TCATGA	1 cut(s)	1366
BspLI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
BspMAI	CTGCAG	2 cut(s)	1023, 2170
BspMI	ACCTGC	5 cut(s)	373, 439, 1083, 1206, 2726
BspPI	GGATC	6 cut(s)	82, 1314, 1771, 1784, 2466, 2906
BspT107I	GGYRCC	3 cut(s)	143, 455, 1885
BspTI	CTTAAG	2 cut(s)	662, 1006
BspTNI	GGTCTC	3 cut(s)	1101, 1251, 2892
BsrBI	CCGCTC	2 cut(s)	2826, 2871
BsrDI	GCAATG	1 cut(s)	2652
BsrFI	RCCGGY	3 cut(s)	77, 140, 493
BsrGI	TGTACA	1 cut(s)	1534
BsrI	ACTGG	3 cut(s)	289, 1552, 2121
BssAI	RCCGGY	3 cut(s)	77, 140, 493
BssECI	CCNNGG	7 cut(s)	57, 313, 1444, 2175, 2695, 2750, 2915
BssNI	GRCGYC	2 cut(s)	138, 144
BssT1I	CCWWGG	2 cut(s)	1444, 2750
Bst2UI	CCWGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
Bst4CI	ACNGT	7 cut(s)	358, 463, 469, 922, 1564, 1597, 2614
Bst6I	CTCTTC	3 cut(s)	2448, 2849, 2907
BstACI	GRCGYC	2 cut(s)	138, 144
BstAFI	CTTAAG	2 cut(s)	662, 1006
BstAPI	GCANNNNNTGC	2 cut(s)	1892, 2660
BstAUI	TGTACA	1 cut(s)	1534
BstBAI	YACGTR	1 cut(s)	2660
BstC8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1935, 2295, 2652, 2665, 2771
BstDEI	CTNAG	8 cut(s)	1098, 1302, 1472, 1619, 1685, 2161, 2363, 2862
BstDSI	CCRYGG	4 cut(s)	57, 313, 1444, 2175
BstEII	GGTNACC	1 cut(s)	2477
BstF5I	GGATG	3 cut(s)	696, 895, 1751
BstFNI	CGCG	5 cut(s)	164, 315, 445, 2643, 2910
BstH2I	RGCGCY	2 cut(s)	147, 2326
BstHHI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
BstMAI	GTCTC	6 cut(s)	297, 1101, 1251, 1742, 2751, 2892
BstMCI	CGRYCG	2 cut(s)	105, 1492
BstNI	CCWGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
BstNSI	RCATGY	4 cut(s)	939, 2297, 2468, 2667
BstPI	GGTNACC	1 cut(s)	2477
BstSCI	CCNGG	6 cut(s)	192, 1234, 1807, 2022, 2077, 2473
BstSFI	CTRYAG	3 cut(s)	1019, 1272, 2166
BstUI	CGCG	5 cut(s)	164, 315, 445, 2643, 2910
BstV2I	GAAGAC	3 cut(s)	443, 1625, 2855
BstX2I	RGATCY	3 cut(s)	1776, 1927, 2458
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	3 cut(s)	1776, 1927, 2458
BstZI	CGGCCG	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	2 cut(s)	1302, 1619
BsuRI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	4 cut(s)	57, 313, 1444, 2175
BtgZI	GCGATG	1 cut(s)	1338
BtsCI	GGATG	3 cut(s)	696, 895, 1751
BtsI	GCAGTG	1 cut(s)	1872
BtsIMutI	CAGTG	4 cut(s)	918, 1872, 2114, 2610
BtuMI	TCGCGA	1 cut(s)	2910
BveI	ACCTGC	5 cut(s)	373, 439, 1083, 1206, 2726
Cac8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1935, 2295, 2652, 2665, 2771
CaiI	CAGNNNCTG	2 cut(s)	72, 295
CciI	TCATGA	1 cut(s)	1366
CfoI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
Cfr10I	RCCGGY	3 cut(s)	77, 140, 493
Cfr13I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
Cfr42I	CCGCGG	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	5 cut(s)	376, 1283, 1424, 1535, 2311
CspAI	ACCGGT	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	5 cut(s)	376, 1283, 1424, 1535, 2311
DdeI	CTNAG	8 cut(s)	1098, 1302, 1472, 1619, 1685, 2161, 2363, 2862
DinI	GGCGCC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	2488
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	79, 102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	3 cut(s)	2448, 2849, 2907
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	3 cut(s)	2448, 2849, 2907
EciI	GGCGGA	1 cut(s)	2460
Ecl136II	GAGCTC	2 cut(s)	330, 990
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	1444, 2750
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	332, 992
Eco31I	GGTCTC	3 cut(s)	1101, 1251, 2892
Eco32I	GATATC	1 cut(s)	2553
Eco47I	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	2 cut(s)	330, 990
Eco57I	CTGAAG	7 cut(s)	1185, 1734, 1752, 1944, 2412, 2491, 2762
Eco72I	CACGTG	1 cut(s)	2660
Eco81I	CCTNAGG	2 cut(s)	1302, 1619
Eco91I	GGTNACC	1 cut(s)	2477
EcoICRI	GAGCTC	2 cut(s)	330, 990
EcoO109I	RGGNCCY	3 cut(s)	238, 2026, 2157
EcoO65I	GGTNACC	1 cut(s)	2477
EcoRII	CCWGG	6 cut(s)	192, 1234, 1807, 2022, 2077, 2473
EcoRV	GATATC	1 cut(s)	2553
EcoT14I	CCWWGG	2 cut(s)	1444, 2750
EcoT38I	GRGCYC	2 cut(s)	332, 992
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	1444, 2750
FalI	AAGNNNNNCTT	2 cut(s)	1640, 1672
FaqI	GGGAC	2 cut(s)	786, 1157
FauI	CCCGC	1 cut(s)	2831
FauNDI	CATATG	1 cut(s)	1251
FblI	GTMKAC	1 cut(s)	826
FokI	GGATG	3 cut(s)	703, 882, 1738
FriOI	GRGCYC	2 cut(s)	332, 992
FspBI	CTAG	6 cut(s)	366, 1038, 1140, 1452, 2058, 2634
GlaI	GCGC	6 cut(s)	76, 145, 165, 444, 2324, 2644
GsaI	CCCAGC	2 cut(s)	892, 1905
GsuI	CTGGAG	5 cut(s)	272, 1299, 1830, 2100, 2138
HaeII	RGCGCY	2 cut(s)	147, 2326
HaeIII	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
HapII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 2928
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
Hin1I	GRCGYC	2 cut(s)	138, 144
Hin6I	GCGC	6 cut(s)	75, 144, 164, 443, 2323, 2643
HinP1I	GCGC	6 cut(s)	75, 144, 164, 443, 2323, 2643
HincII	GTYRAC	2 cut(s)	827, 2617
HindII	GTYRAC	2 cut(s)	827, 2617
HindIII	AAGCTT	2 cut(s)	854, 2879
HpaII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 2928
HphI	GGTGA	8 cut(s)	508, 1101, 1751, 1838, 1890, 1935, 2236, 2471
Hpy166II	GTNNAC	7 cut(s)	64, 659, 827, 1109, 1426, 1847, 2617
Hpy8I	GTNNAC	7 cut(s)	64, 659, 827, 1109, 1426, 1847, 2617
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyCH4III	ACNGT	7 cut(s)	358, 463, 469, 922, 1564, 1597, 2614
HpyCH4IV	ACGT	3 cut(s)	302, 2424, 2659
HpyF3I	CTNAG	8 cut(s)	1098, 1302, 1472, 1619, 1685, 2161, 2363, 2862
HpySE526I	ACGT	3 cut(s)	302, 2424, 2659
Hsp92I	GRCGYC	2 cut(s)	138, 144
HspAI	GCGC	6 cut(s)	75, 144, 164, 443, 2323, 2643
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	77, 140
KroNI	GCCGGC	2 cut(s)	79, 142
KspI	CCGCGG	1 cut(s)	316
LmnI	GCTCC	8 cut(s)	995, 1072, 1333, 1623, 2119, 2143, 2473, 2831
LweI	GCATC	9 cut(s)	904, 1315, 1550, 1654, 1949, 2663, 2680, 2700, 2737
MaeI	CTAG	6 cut(s)	366, 1038, 1140, 1452, 2058, 2634
MaeII	ACGT	3 cut(s)	302, 2424, 2659
MbiI	CCGCTC	2 cut(s)	2826, 2871
MfeI	CAATTG	1 cut(s)	1457
MflI	RGATCY	3 cut(s)	1776, 1927, 2458
MhlI	GDGCHC	3 cut(s)	332, 698, 992
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	2612
MmeI	TCCRAC	4 cut(s)	767, 950, 2163, 2358
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	77, 140
MroXI	GAANNNNTTC	4 cut(s)	655, 971, 1170, 2880
MslI	CAYNNNNRTG	3 cut(s)	414, 2095, 2662
MspA1I	CMGCKG	3 cut(s)	315, 1937, 2300
MspCI	CTTAAG	2 cut(s)	662, 1006
MspI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 2928
MspR9I	CCNGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
MunI	CAATTG	1 cut(s)	1457
Mva1269I	GAATGC	3 cut(s)	565, 610, 2585
MvaI	CCWGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
MvnI	CGCG	5 cut(s)	164, 315, 445, 2643, 2910
NaeI	GCCGGC	2 cut(s)	79, 142
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1444
NdeI	CATATG	1 cut(s)	1251
NgoMIV	GCCGGC	2 cut(s)	77, 140
NlaIV	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	1558, 2328, 2477, 2930
NruI	TCGCGA	1 cut(s)	2910
NspI	RCATGY	4 cut(s)	939, 2297, 2468, 2667
OliI	CACNNNNGTG	1 cut(s)	2095
PaeI	GCATGC	2 cut(s)	2297, 2667
PagI	TCATGA	1 cut(s)	1366
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	3 cut(s)	565, 610, 2585
PdiI	GCCGGC	2 cut(s)	79, 142
PdmI	GAANNNNTTC	4 cut(s)	655, 971, 1170, 2880
PfoI	TCCNGGA	2 cut(s)	1807, 2022
PinAI	ACCGGT	1 cut(s)	493
Ple19I	CGATCG	1 cut(s)	1492
PleI	GAGTC	1 cut(s)	2612
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	2660
PmlI	CACGTG	1 cut(s)	2660
PpsI	GAGTC	1 cut(s)	2612
Ppu21I	YACGTR	1 cut(s)	2660
PpuMI	RGGWCCY	2 cut(s)	238, 2026
Psp124BI	GAGCTC	2 cut(s)	332, 992
Psp5II	RGGWCCY	2 cut(s)	238, 2026
Psp6I	CCWGG	6 cut(s)	192, 1234, 1807, 2022, 2077, 2473
PspCI	CACGTG	1 cut(s)	2660
PspEI	GGTNACC	1 cut(s)	2477
PspFI	CCCAGC	2 cut(s)	888, 1901
PspGI	CCWGG	6 cut(s)	192, 1234, 1807, 2022, 2077, 2473
PspN4I	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
PspPI	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
PspPPI	RGGWCCY	2 cut(s)	238, 2026
PstI	CTGCAG	2 cut(s)	1023, 2170
PstNI	CAGNNNCTG	2 cut(s)	72, 295
PsuI	RGATCY	3 cut(s)	1776, 1927, 2458
PvuI	CGATCG	1 cut(s)	1492
PvuII	CAGCTG	2 cut(s)	1937, 2300
RruI	TCGCGA	1 cut(s)	2910
RsaI	GTAC	5 cut(s)	377, 1284, 1425, 1536, 2312
RsaNI	GTAC	5 cut(s)	376, 1283, 1424, 1535, 2311
RseI	CAYNNNNRTG	3 cut(s)	414, 2095, 2662
SacI	GAGCTC	2 cut(s)	332, 992
SacII	CCGCGG	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	825
Sau96I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
SchI	GAGTC	1 cut(s)	2612
ScrFI	CCNGG	6 cut(s)	194, 1236, 1809, 2024, 2079, 2475
SduI	GDGCHC	3 cut(s)	332, 698, 992
SfaNI	GCATC	9 cut(s)	904, 1315, 1550, 1654, 1949, 2663, 2680, 2700, 2737
SfcI	CTRYAG	3 cut(s)	1019, 1272, 2166
SfoI	GGCGCC	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	316
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	316
SinI	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
SmiMI	CAYNNNNRTG	3 cut(s)	414, 2095, 2662
SmlI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 2008, 2723
SmoI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 2008, 2723
SpeI	ACTAGT	2 cut(s)	1037, 1451
SphI	GCATGC	2 cut(s)	2297, 2667
SseBI	AGGCCT	1 cut(s)	323
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	673, 1760
SspMI	CTAG	6 cut(s)	366, 1038, 1140, 1452, 2058, 2634
SstI	GAGCTC	2 cut(s)	332, 992
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	6 cut(s)	192, 1234, 1807, 2022, 2077, 2473
StyI	CCWWGG	2 cut(s)	1444, 2750
TaaI	ACNGT	7 cut(s)	358, 463, 469, 922, 1564, 1597, 2614
TaiI	ACGT	3 cut(s)	305, 2427, 2662
TaqI	TCGA	9 cut(s)	93, 123, 135, 156, 201, 826, 1492, 1964, 2003
TaqII	GACCGA	1 cut(s)	2874
TatI	WGTACW	3 cut(s)	1423, 1534, 2310
TauI	GCSGC	5 cut(s)	107, 216, 318, 448, 2874
TscAI	CASTG	4 cut(s)	925, 1872, 2121, 2617
TseFI	GTSAC	4 cut(s)	1558, 2328, 2477, 2930
Tsp45I	GTSAC	4 cut(s)	1558, 2328, 2477, 2930
TspDTI	ATGAA	7 cut(s)	1386, 1404, 1496, 1503, 1625, 2234, 2239
TspGWI	ACGGA	5 cut(s)	9, 46, 443, 2192, 2611
TspRI	CASTG	4 cut(s)	925, 1872, 2121, 2617
Vha464I	CTTAAG	2 cut(s)	662, 1006
VpaK11BI	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
XapI	RAATTY	4 cut(s)	349, 487, 913, 1393
XbaI	TCTAGA	2 cut(s)	2057, 2633
XceI	RCATGY	4 cut(s)	939, 2297, 2468, 2667
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	4 cut(s)	655, 971, 1170, 2880
XspI	CTAG	6 cut(s)	366, 1038, 1140, 1452, 2058, 2634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.