Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009282

Physical Location & Seq

Genomic Coordinates Forward (+)

58755818 .. 58761716

Gene Structure 5899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGGAGGCGACTACTCCTCCGTCCGATTCTCCATCTATAAAACCCATAAACAAGTCAGTGGTCCACAGAATCTGCGCCGGCCAAGTGATCCTCGACCTCTCGGCCGCCGTCAAAGAATTGGTCGAGAACAGCCTCGACGCCGGCGCCACCACCATCGAGATCGCGCTCAAAGACTACGGCAAAGAGTGGTTCCAGGTCATCGATAACGGCTGCGGCATTTCGCCCAACAACTTCAAGGTCCTTGCCCTCAAGCACCACACTTCCAAACTCGCCGGATTCCCTGACCTCCAGTCTCTGACGACGTTCGGGTTTCGCGGCGAGGCCTTGAGTTCTCTGTGTGCTTTGGGGAATTTAACGGTGGAAACCAGGACCAAGTACGAGCAGGTCGCCACGCACTTGACTTTTGACCATTCCGGTTTGTTGGTAACGGAAAAGAAGACGGCGCGGCAGGTCGGCACCACCGTAACGGTCAAGAATCTGTTTGTGAATTTACCGGTGAGGTGCAAGGAGTTCAGTCGCAACATTCGGAAGGAGTATGGGAAGCTGGTTTCTCTATTGAATGCCTATGCTCTTATTGCGAAAGGGGTTCGGTTAGTCTGCACGAATGCCATAGGTAGAAATGCAAAGTCTGTGGTGCTTAAAACGCAAGGAAGTGGTTCACTTAAGGATAATATTGTGACATTGTTTGGGATGAGCACTTTCAGTTGTTTAGAGCCTGTGAGTATATCTGTATCTGATAGTTGCAAGGTTGATGGTTTCCTTTCCAAGTCGGGACAAGGTAGTGGTCGGAACATGGGAGATAGGCAGTTCTTTTTCGTGAATGGTCGACCTGTGGATATGCCTAAAATTACAAAGCTTGTGAATGAGTTGTATAGAGGGGCAAACTCCCAGCAGCATCCTATTGCCATATTGAATTTCACTGTTCCGACAAGAGCGTGTGATGTCAATGTTACTCCTGATAAAAGGAAAGTGTTCTTTTCTGATGAGAGCTCCATACTTGTTGCCTTAAGGGAGGGTCTGCAGCAGATATATTCCACTAGTAATGCTCGTTACTCTGTTAATAAAGTGGAGGAGCCTGCCAAAGAAGCAGGCAAGTCTCAGTTGTGTTCACCTCATCAAAGGTCTCATAAACAATTAGCTAGGGATGATGATGATGATGATGATGATGTTCCTGAAGAAGTTCGTCCGGCTGATAAAGCTGAGGAGGCTACAAAAGAAGGAGGCAGGTCTGAATTGTGTTTTCCTGGTCAGAGGTCTCATATGTTTCTGAGACAATCCTCTATAGATTCTGTACCTAAAGAAGTTAGTCCTGAGGATCACACTCCAGAAGGCGATGCTCCTCTGAAAGCTGCGGAAACTGATTCTGAAACTAATCATGATGAAGAAGGGTTTAGCCATGAAAATTCAATGGGGAAGGATTTTGCTTTAAGAGTACACAGCATTAAGAAGGTCCATGGAACTAGTCAATTGACAAAGAATCTCTGTAGTATGAAAGCTGATCGAATTGCAGCAAATGGAGATTCATGTAGTCATTCAAGCTCTGTACAAGCATCAATTAACCAGTTTGTAACTGTAACTAAAAGAAAACATGATAGTATTAGCACAGTCCTGTCTGAAATGCCTGTCCTAAGGAACCAAACTCTTCATTGTCAATCCAAGAATGATTCACTTAATGCTGTTTCAAAACCCCCACTTAGTCATCAGCAGATCAATGATTCTACTGAAGTTGATAATTCTGCTGAAGCTGGTGAGAATGAGCCATCCAAATATTTTAGAGTAGATAGGATCCTCAACAAAATTAGAGTTCCAGTTTCTCCTGGAGGCAAGATTGAGGGTGAAGGACATGGAGAAGGTTTACAGGCTCAACAGAAAGCAGTGCCTGTTGCTGATATGGCACCAACTGCTTCACCCAGCAGGGATATAAGTCTGTCTGAAGATCTGCCAGCTGCATCACCTTCTTCTTGTATATTGTCGAATACTCCAAAGCCTTCTTCTGGTCTTATGATGTGTTCGACCTTGAGATTTAGTTTCCAGGACCTAAAGACAAGGAGGCAGCAAATATATTCTAGATTGCAATCAAGCATACCTGGAGTAAAAGCACAAAGGTGCTATACTGCTGCAACACTGGAGCTTTCTCAACCAGAAAATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTACCACGGAGTTGGAAAGACTTTTCAGAAAAGAAGATTTTGGTAGAATGAAGGTGATTGGGCAATTCAATCTTGGCTTCATTATTGGGAAATTAGATCAAGATTTATTTATCGTAGATCAGCATGCAGCTGATGAGAAGTACAATTTTGAGCGCCTGTCACAATCTACCATCTTAAACCAACAGCCTTTGCTTAGGCCATTGAGGTTGGAGTTATCTCCTGAAGAAGAAGTTGTTGCTTCAATGCACATGGACGTAATCAGGAAAAATGGATTTTCTTTGGAAGAGGATCTACATGCTCCTCCTGGTCACCATTTTAAATTGAAAGCTGTTCCCTTCAGTAAAAACATAACTTTTGGAGTTGAAGGTTATACTAATGTAAAAAGTCCGCATGCTCTTTCCGCAGACAGTAAATTATTGTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

868

Amino Acids

95.32

Weight (kDa)

7.12

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	31 - 87	2.1e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	34 - 136	4.1e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	227 - 344	6.2e-25	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	746 - 841	1.2e-20	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02460 AT4G02460 AT4G02460 AT4G02460
fragaria_vesca	FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510
malus_domestica	MD11G1305800.v1.1
prunus_persica	Prupe.8G259200_v2.0.a1 Prupe.8G259200_v2.0.a1
pyrus_communis	pycom11g26760
rosa_chinensis	RchiOBHm_Chr6g0293721
rosa_laevigata	RLG00000011929
rosa_roxburghii	Rroxscaffold_7G00173950
rosa_rugosa	Rorug06G0237600
rosa_samantha	Rh6AG350400 Rh6BG357900 Rh6CG364700 Rh6DG351600
rosa_wichuraiana	Rw6G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	373, 439, 1215
AccB1I	GGYRCC	3 cut(s)	143, 455, 1894
AccBSI	CCGCTC	1 cut(s)	2155
AccI	GTMKAC	1 cut(s)	826
AccII	CGCG	3 cut(s)	164, 315, 445
AciI	CCGC	8 cut(s)	105, 213, 315, 445, 1352, 2155, 2567, 2580
AclWI	GGATC	5 cut(s)	82, 1323, 1780, 1793, 2475
AcoI	YGGCCR	2 cut(s)	79, 102
AcsI	RAATTY	4 cut(s)	349, 487, 913, 1402
AcuI	CTGAAG	6 cut(s)	1194, 1743, 1761, 1953, 2421, 2500
AcyI	GRCGYC	2 cut(s)	138, 144
AfaI	GTAC	5 cut(s)	377, 1293, 1434, 1545, 2321
AfiI	CCNNNNNNNGG	1 cut(s)	1994
AflII	CTTAAG	2 cut(s)	662, 1006
AgeI	ACCGGT	1 cut(s)	493
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	2 cut(s)	1037, 1460
AjnI	CCWGG	7 cut(s)	192, 365, 1243, 1816, 2031, 2086, 2482
AjuI	GAANNNNNNNTTGG	2 cut(s)	1975, 2007
AleI	CACNNNNGTG	1 cut(s)	2104
Alw21I	GWGCWC	2 cut(s)	698, 992
Alw26I	GTCTC	5 cut(s)	297, 1101, 1128, 1260, 1264
AlwI	GGATC	5 cut(s)	82, 1323, 1780, 1793, 2475
AlwNI	CAGNNNCTG	3 cut(s)	72, 295, 1880
AoxI	GGCC	5 cut(s)	79, 102, 321, 2166, 2375
ApoI	RAATTY	4 cut(s)	349, 487, 913, 1402
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	3 cut(s)	655, 971, 1179
AspLEI	GCGC	5 cut(s)	77, 146, 166, 445, 2334
AspS9I	GGNCC	6 cut(s)	61, 238, 369, 1450, 2035, 2166
AsuHPI	GGTGA	8 cut(s)	508, 1101, 1760, 1847, 1899, 1944, 2245, 2480
AvaII	GGWCC	5 cut(s)	61, 238, 369, 1450, 2035
AxyI	CCTNAGG	2 cut(s)	1311, 1628
BamHI	GGATCC	1 cut(s)	1785
BanI	GGYRCC	3 cut(s)	143, 455, 1894
BanII	GRGCYC	1 cut(s)	992
BarI	GAAGNNNNNNTAC	2 cut(s)	2454, 2486
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	698, 992
BbvCI	CCTCAGC	1 cut(s)	1200
BccI	CCATC	5 cut(s)	40, 161, 746, 1768, 2357
BceAI	ACGGC	4 cut(s)	92, 193, 223, 456
BciT130I	CCWGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
BcoDI	GTCTC	5 cut(s)	297, 1101, 1128, 1260, 1264
BcuI	ACTAGT	2 cut(s)	1037, 1460
BfaI	CTAG	4 cut(s)	1038, 1140, 1461, 2067
BfmI	CTRYAG	4 cut(s)	1019, 1281, 1483, 2175
BfoI	RGCGCY	2 cut(s)	147, 2335
BfrI	CTTAAG	2 cut(s)	662, 1006
BfuAI	ACCTGC	3 cut(s)	373, 439, 1215
BglII	AGATCT	1 cut(s)	1936
Bme1390I	CCNGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
Bme18I	GGWCC	5 cut(s)	61, 238, 369, 1450, 2035
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	6 cut(s)	61, 238, 369, 1450, 2035, 2166
BmiI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1634, 1787, 1896
BmrFI	CCNGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
BmsI	GCATC	4 cut(s)	904, 1324, 1559, 1958
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	5 cut(s)	272, 1308, 1839, 2109, 2147
Bpu10I	CCTNAGC	3 cut(s)	1200, 2170, 2372
BpuEI	CTTGAG	3 cut(s)	233, 346, 2038
Bsa29I	ATCGAT	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	2074
BsaHI	GRCGYC	2 cut(s)	138, 144
BsaI	GGTCTC	2 cut(s)	1128, 1260
BsaJI	CCNNGG	2 cut(s)	1453, 2184
BsaWI	WCCGGW	2 cut(s)	413, 493
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	1994
Bse118I	RCCGGY	3 cut(s)	77, 140, 493
Bse1I	ACTGG	4 cut(s)	289, 1561, 1808, 2130
Bse21I	CCTNAGG	2 cut(s)	1311, 1628
Bse8I	GATNNNNATC	1 cut(s)	2074
BseBI	CCWGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	1453, 2184
BseGI	GGATG	4 cut(s)	696, 895, 1150, 1760
BseJI	GATNNNNATC	1 cut(s)	2074
BseLI	CCNNNNNNNGG	1 cut(s)	1994
BseMII	CTCAG	4 cut(s)	1112, 1191, 1259, 1302
BseNI	ACTGG	4 cut(s)	289, 1561, 1808, 2130
BseRI	GAGGAG	6 cut(s)	6, 1085, 1217, 1329, 2165, 2469
BseX3I	CGGCCG	1 cut(s)	102
BseYI	CCCAGC	2 cut(s)	888, 1910
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	3 cut(s)	164, 315, 445
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	5 cut(s)	81, 104, 323, 2168, 2377
BshNI	GGYRCC	3 cut(s)	143, 455, 1894
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	698, 992
BsiSI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1187
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	1 cut(s)	1994
BsmAI	GTCTC	5 cut(s)	297, 1101, 1128, 1260, 1264
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	2 cut(s)	565, 610
BsnI	GGCC	5 cut(s)	81, 104, 323, 2168, 2377
Bso31I	GGTCTC	2 cut(s)	1128, 1260
Bsp1286I	GDGCHC	2 cut(s)	698, 992
Bsp1407I	TGTACA	1 cut(s)	1543
Bsp19I	CCATGG	1 cut(s)	1453
BspACI	CCGC	8 cut(s)	105, 213, 315, 445, 1352, 2155, 2567, 2580
BspANI	GGCC	5 cut(s)	81, 104, 323, 2168, 2377
BspCNI	CTCAG	4 cut(s)	1111, 1192, 1260, 1303
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	3 cut(s)	164, 315, 445
BspHI	TCATGA	1 cut(s)	1375
BspLI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1634, 1787, 1896
BspMAI	CTGCAG	2 cut(s)	1023, 2179
BspMI	ACCTGC	3 cut(s)	373, 439, 1215
BspPI	GGATC	5 cut(s)	82, 1323, 1780, 1793, 2475
BspT107I	GGYRCC	3 cut(s)	143, 455, 1894
BspTI	CTTAAG	2 cut(s)	662, 1006
BspTNI	GGTCTC	2 cut(s)	1128, 1260
BsrBI	CCGCTC	1 cut(s)	2155
BsrFI	RCCGGY	3 cut(s)	77, 140, 493
BsrGI	TGTACA	1 cut(s)	1543
BsrI	ACTGG	4 cut(s)	289, 1561, 1808, 2130
BssAI	RCCGGY	3 cut(s)	77, 140, 493
BssECI	CCNNGG	2 cut(s)	1453, 2184
BssNI	GRCGYC	2 cut(s)	138, 144
BssT1I	CCWWGG	1 cut(s)	1453
Bst2UI	CCWGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
Bst4CI	ACNGT	7 cut(s)	358, 463, 469, 922, 1573, 1606, 2588
Bst6I	CTCTTC	2 cut(s)	1647, 2457
BstACI	GRCGYC	2 cut(s)	138, 144
BstAFI	CTTAAG	2 cut(s)	662, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	1901
BstAUI	TGTACA	1 cut(s)	1543
BstC8I	GCNNGC	7 cut(s)	79, 142, 1077, 1090, 1944, 2304, 2571
BstDEI	CTNAG	8 cut(s)	1098, 1200, 1268, 1311, 1628, 1694, 2170, 2372
BstDSI	CCRYGG	2 cut(s)	1453, 2184
BstEII	GGTNACC	1 cut(s)	2486
BstF5I	GGATG	4 cut(s)	696, 895, 1150, 1760
BstFNI	CGCG	3 cut(s)	164, 315, 445
BstH2I	RGCGCY	2 cut(s)	147, 2335
BstHHI	GCGC	5 cut(s)	77, 146, 166, 445, 2334
BstMAI	GTCTC	5 cut(s)	297, 1101, 1128, 1260, 1264
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	9 cut(s)	575, 643, 1085, 1196, 1205, 1892, 1901, 2174, 2579
BstNI	CCWGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
BstNSI	RCATGY	3 cut(s)	2306, 2477, 2573
BstPI	GGTNACC	1 cut(s)	2486
BstSCI	CCNGG	7 cut(s)	192, 365, 1243, 1816, 2031, 2086, 2482
BstSFI	CTRYAG	4 cut(s)	1019, 1281, 1483, 2175
BstUI	CGCG	3 cut(s)	164, 315, 445
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	3 cut(s)	1785, 1936, 2467
BstXI	CCANNNNNNTGG	1 cut(s)	2191
BstYI	RGATCY	3 cut(s)	1785, 1936, 2467
BstZI	CGGCCG	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	2 cut(s)	1311, 1628
BsuRI	GGCC	5 cut(s)	81, 104, 323, 2168, 2377
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	1453, 2184
BtgZI	GCGATG	1 cut(s)	1347
BtsCI	GGATG	4 cut(s)	696, 895, 1150, 1760
BtsI	GCAGTG	1 cut(s)	1881
BtsIMutI	CAGTG	4 cut(s)	63, 918, 1881, 2123
BveI	ACCTGC	3 cut(s)	373, 439, 1215
Cac8I	GCNNGC	7 cut(s)	79, 142, 1077, 1090, 1944, 2304, 2571
CaiI	CAGNNNCTG	3 cut(s)	72, 295, 1880
CciI	TCATGA	1 cut(s)	1375
CfoI	GCGC	5 cut(s)	77, 146, 166, 445, 2334
Cfr10I	RCCGGY	3 cut(s)	77, 140, 493
Cfr13I	GGNCC	6 cut(s)	61, 238, 369, 1450, 2035, 2166
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	5 cut(s)	376, 1292, 1433, 1544, 2320
CspAI	ACCGGT	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	5 cut(s)	376, 1292, 1433, 1544, 2320
DdeI	CTNAG	8 cut(s)	1098, 1200, 1268, 1311, 1628, 1694, 2170, 2372
DinI	GGCGCC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	2497
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	79, 102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	1647, 2457
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	2 cut(s)	1647, 2457
Ecl136II	GAGCTC	1 cut(s)	990
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	1453
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	2 cut(s)	1128, 1260
Eco47I	GGWCC	5 cut(s)	61, 238, 369, 1450, 2035
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	6 cut(s)	1194, 1743, 1761, 1953, 2421, 2500
Eco81I	CCTNAGG	2 cut(s)	1311, 1628
Eco91I	GGTNACC	1 cut(s)	2486
EcoICRI	GAGCTC	1 cut(s)	990
EcoO109I	RGGNCCY	3 cut(s)	238, 2035, 2166
EcoO65I	GGTNACC	1 cut(s)	2486
EcoRII	CCWGG	7 cut(s)	192, 365, 1243, 1816, 2031, 2086, 2482
EcoT14I	CCWWGG	1 cut(s)	1453
EcoT38I	GRGCYC	1 cut(s)	992
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	1453
FaqI	GGGAC	1 cut(s)	786
FauNDI	CATATG	1 cut(s)	1260
FblI	GTMKAC	1 cut(s)	826
FokI	GGATG	4 cut(s)	703, 882, 1157, 1747
FriOI	GRGCYC	1 cut(s)	992
FspBI	CTAG	4 cut(s)	1038, 1140, 1461, 2067
GlaI	GCGC	5 cut(s)	76, 145, 165, 444, 2333
GsaI	CCCAGC	2 cut(s)	892, 1914
GsuI	CTGGAG	5 cut(s)	272, 1308, 1839, 2109, 2147
HaeII	RGCGCY	2 cut(s)	147, 2335
HaeIII	GGCC	5 cut(s)	81, 104, 323, 2168, 2377
HapII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1187
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	5 cut(s)	77, 146, 166, 445, 2334
Hin1I	GRCGYC	2 cut(s)	138, 144
Hin6I	GCGC	5 cut(s)	75, 144, 164, 443, 2332
HinP1I	GCGC	5 cut(s)	75, 144, 164, 443, 2332
HincII	GTYRAC	1 cut(s)	827
HindII	GTYRAC	1 cut(s)	827
HindIII	AAGCTT	1 cut(s)	854
HpaII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1187
HphI	GGTGA	8 cut(s)	508, 1101, 1760, 1847, 1899, 1944, 2245, 2480
Hpy166II	GTNNAC	6 cut(s)	64, 659, 827, 1109, 1435, 1856
Hpy8I	GTNNAC	6 cut(s)	64, 659, 827, 1109, 1435, 1856
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyCH4III	ACNGT	7 cut(s)	358, 463, 469, 922, 1573, 1606, 2588
HpyCH4IV	ACGT	2 cut(s)	302, 2433
HpyF10VI	GCNNNNNNNGC	9 cut(s)	575, 643, 1085, 1196, 1205, 1892, 1901, 2174, 2579
HpyF3I	CTNAG	8 cut(s)	1098, 1200, 1268, 1311, 1628, 1694, 2170, 2372
HpySE526I	ACGT	2 cut(s)	302, 2433
Hsp92I	GRCGYC	2 cut(s)	138, 144
HspAI	GCGC	5 cut(s)	75, 144, 164, 443, 2332
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	77, 140
KroNI	GCCGGC	2 cut(s)	79, 142
LmnI	GCTCC	6 cut(s)	995, 1072, 1342, 2128, 2152, 2482
LweI	GCATC	4 cut(s)	904, 1324, 1559, 1958
MaeI	CTAG	4 cut(s)	1038, 1140, 1461, 2067
MaeII	ACGT	2 cut(s)	302, 2433
MaeIII	GTNAC	9 cut(s)	424, 463, 676, 949, 1049, 1567, 1573, 2337, 2486
MbiI	CCGCTC	1 cut(s)	2155
MfeI	CAATTG	1 cut(s)	1466
MflI	RGATCY	3 cut(s)	1785, 1936, 2467
MhlI	GDGCHC	2 cut(s)	698, 992
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	4 cut(s)	767, 950, 2172, 2367
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	77, 140
MroXI	GAANNNNTTC	3 cut(s)	655, 971, 1179
MslI	CAYNNNNRTG	1 cut(s)	2104
MspA1I	CMGCKG	2 cut(s)	1946, 2309
MspCI	CTTAAG	2 cut(s)	662, 1006
MspI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1187
MspR9I	CCNGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
MunI	CAATTG	1 cut(s)	1466
Mva1269I	GAATGC	2 cut(s)	565, 610
MvaI	CCWGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
MvnI	CGCG	3 cut(s)	164, 315, 445
MwoI	GCNNNNNNNGC	9 cut(s)	575, 643, 1085, 1196, 1205, 1892, 1901, 2174, 2579
NaeI	GCCGGC	2 cut(s)	79, 142
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1453
NdeI	CATATG	1 cut(s)	1260
NgoMIV	GCCGGC	2 cut(s)	77, 140
NlaIV	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1634, 1787, 1896
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	676, 2337, 2486
NspI	RCATGY	3 cut(s)	2306, 2477, 2573
OliI	CACNNNNGTG	1 cut(s)	2104
PaeI	GCATGC	2 cut(s)	2306, 2573
PagI	TCATGA	1 cut(s)	1375
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	2 cut(s)	565, 610
PdiI	GCCGGC	2 cut(s)	79, 142
PdmI	GAANNNNTTC	3 cut(s)	655, 971, 1179
PfoI	TCCNGGA	2 cut(s)	1816, 2031
PinAI	ACCGGT	1 cut(s)	493
PluTI	GGCGCC	1 cut(s)	147
PpuMI	RGGWCCY	2 cut(s)	238, 2035
Psp124BI	GAGCTC	1 cut(s)	992
Psp5II	RGGWCCY	2 cut(s)	238, 2035
Psp6I	CCWGG	7 cut(s)	192, 365, 1243, 1816, 2031, 2086, 2482
PspEI	GGTNACC	1 cut(s)	2486
PspFI	CCCAGC	2 cut(s)	888, 1910
PspGI	CCWGG	7 cut(s)	192, 365, 1243, 1816, 2031, 2086, 2482
PspN4I	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1634, 1787, 1896
PspPI	GGNCC	6 cut(s)	61, 238, 369, 1450, 2035, 2166
PspPPI	RGGWCCY	2 cut(s)	238, 2035
PstI	CTGCAG	2 cut(s)	1023, 2179
PstNI	CAGNNNCTG	3 cut(s)	72, 295, 1880
PsuI	RGATCY	3 cut(s)	1785, 1936, 2467
PvuII	CAGCTG	2 cut(s)	1946, 2309
RsaI	GTAC	5 cut(s)	377, 1293, 1434, 1545, 2321
RsaNI	GTAC	5 cut(s)	376, 1292, 1433, 1544, 2320
RseI	CAYNNNNRTG	1 cut(s)	2104
SacI	GAGCTC	1 cut(s)	992
SalI	GTCGAC	1 cut(s)	825
Sau96I	GGNCC	6 cut(s)	61, 238, 369, 1450, 2035, 2166
ScrFI	CCNGG	7 cut(s)	194, 367, 1245, 1818, 2033, 2088, 2484
SduI	GDGCHC	2 cut(s)	698, 992
SfaNI	GCATC	4 cut(s)	904, 1324, 1559, 1958
SfcI	CTRYAG	4 cut(s)	1019, 1281, 1483, 2175
SfoI	GGCGCC	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	5 cut(s)	61, 238, 369, 1450, 2035
SmiMI	CAYNNNNRTG	1 cut(s)	2104
SmlI	CTYRAG	5 cut(s)	248, 325, 662, 1006, 2017
SmoI	CTYRAG	5 cut(s)	248, 325, 662, 1006, 2017
SpeI	ACTAGT	2 cut(s)	1037, 1460
SphI	GCATGC	2 cut(s)	2306, 2573
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	8 cut(s)	105, 213, 315, 445, 1352, 2155, 2567, 2580
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	673, 1769
SspMI	CTAG	4 cut(s)	1038, 1140, 1461, 2067
SstI	GAGCTC	1 cut(s)	992
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	7 cut(s)	192, 365, 1243, 1816, 2031, 2086, 2482
StyI	CCWWGG	1 cut(s)	1453
TaaI	ACNGT	7 cut(s)	358, 463, 469, 922, 1573, 1606, 2588
TaiI	ACGT	2 cut(s)	305, 2436
TaqI	TCGA	9 cut(s)	93, 123, 135, 156, 201, 826, 1501, 1973, 2012
TatI	WGTACW	3 cut(s)	1432, 1543, 2319
TauI	GCSGC	4 cut(s)	107, 216, 318, 448
TscAI	CASTG	4 cut(s)	63, 925, 1881, 2130
TseFI	GTSAC	3 cut(s)	676, 2337, 2486
Tsp45I	GTSAC	3 cut(s)	676, 2337, 2486
TspDTI	ATGAA	7 cut(s)	1395, 1413, 1505, 1512, 1634, 2243, 2248
TspGWI	ACGGA	3 cut(s)	9, 443, 2201
TspRI	CASTG	4 cut(s)	63, 925, 1881, 2130
Vha464I	CTTAAG	2 cut(s)	662, 1006
VpaK11BI	GGWCC	5 cut(s)	61, 238, 369, 1450, 2035
XapI	RAATTY	4 cut(s)	349, 487, 913, 1402
XbaI	TCTAGA	1 cut(s)	2066
XceI	RCATGY	3 cut(s)	2306, 2477, 2573
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	3 cut(s)	655, 971, 1179
XspI	CTAG	4 cut(s)	1038, 1140, 1461, 2067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.