Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009282

Physical Location & Seq

Genomic Coordinates Forward (+)

55153420 .. 55158762

Gene Structure 5343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2829 bp

ATGGAGGCGACTACTCCTCCGTCCGATTCTCCATCTATAAAACCCATAAACAAGTCCGTGGTCCACAGAATCTGCGCCGGCCAAGTGATCCTCGACCTCTCGGCCGCCGTCAAAGAATTGGTCGAGAACAGCCTCGACGCCGGCGCCACCACCATCGAGATCGCGCTCAAAGACTACGGCAAAGAGTGGTTCCAGGTCATCGATAACGGCTGCGGCATTTCGCCCAACAACTTCAAGGTCCTTGCCCTCAAGCACCACACTTCCAAACTCGCCGGATTCCCTGACCTCCAGTCTCTGACGACGTTCGGGTTTCGCGGCGAGGCCTTGAGTTCTCTGTGTGCTTTGGGGAATTTAACGGTGGAAACCAGGACCAAGTACGAGCAGGTCGCCACGCACTTGACTTTTGACCATTCCGGTGTGTTGGTAACGGAAAAGAAGACGGCGCGGCAGGTCGGCACCACCGTAACGGTCAAGAATCTGTTTGTGAATTTACCGGTGAGGTGCAAGGAGTTCAGTCGCAACATTCGGAAGGAGTATGGGAAGCTGGTTTCTCTATTGAATGCCTATGCTCTTATTGCGAAAGGGGTTCGGTTAGTCTGCACGAATGCCATAGGTAGAAATGCAAAGTCTGTGGTGCTTAAAACGCAAGGAAGTGGTTCACTTAAGGATAATATTGTGACATTGTTTGGGATGAGCACTTTCAGTTGTTTAGAGCCTGTGAGTATATCTGTATCTGATAGTTGCAAGGTTGATGGTTTCCTTTCCAAGTCGGGACAAGGTAGTGGTCGGAACATGGGAGATAGGCAGTTCTTTTTCGTGAATGGTCGACCTGTGGACATGCCTAAAATTACAAAGCTTGTGAATGAGTTGTATAGAGGGGCAAACTCCCAGCAGCATCCTATTGCCATATTGAATTTCACTGTTCCGACAAGAGCGTGTGATGTCAATGTTACTCCTGATAAAAGGAAGGTGTTCTTTTCTGATGAGAGCTCCATACTTGTTGCCTTAAGGGAGGGTCTGCAGCAGATATATTCCACTAGTAATGCTCGTTACTCTGTTAATAAAGTGGAGGAGCCTGCCAAAGAAGCAGGCAGGTCTCAGTTGTGTTCACCTCATCAAAGGTCTCATAAACAATTAGCTAGGGATGATGATGATGATGATGTTCCTGAAGAAGTTCGTCCGGCTGATAAAGCTGAGGAGGCTACAAAAGAAGGAGGCAGGTCTGAATTGTGTTTTCCTGGTCAGAGGTCTCATACCTCTATAGATTCTGTACCTAAAGAAGTTAGTCCTGAGGATCACACTCCAGAAGGCGATGCTCCTCTGAAAGCTGCGGAAACTGATTCTGAAACTAATCATGATGAGGAAGGGTTTAGCCATGAAAATTTGGGGAAGGATTTTGCTTTAAGAGTACACAGCATTAAGAAGGTCCATGGAACTAGTCAATTGACAAAGAATCTCAGTAGTATGAAAGCTGATCGAATTGCAGCAAATGGAGATTCATGTAGTCATTCAAGCTCTGTACAAGCATCAATTAACCAGTTTGTAACTGTAACTAAAAGAAAACATGATAGTATTAGCACAGTCCTGTCTGAAATGCCTGTCCTAAGGAACCAAAGTCTTCATTGTCAATCCAAGAATGATTCACTTAATGGTGTTTCAAAACCCCCACTTAGTCATCAGCAGATCAATGATTCTACTGAAGTTGATAATTCTGCTGAAGCTGGTGAGAATGAGCCATCCAAATATTTTAGAGTAGATAGGATCCTCAACAAAATTAGAGTTCCAGTTTCTCCTGGAGGCAAGATTGAGGGTGAAGGACATGGAGAAGGTTTACAGGCTCAACAGAAAGCAGTGCCTGTTGCTGATATGGCACCAACTGCTTCACCCAGCAGGGATATAAGTCTGTCTGAAGATCTGCCAGCTGCATCACCTTCTTCTTGTATATTGTCGAATACTCCAAAGCCTTCTTCTGGTCTTATGATGTGTTCGACCTTGAGATTTAGTTTCCAGGACCTAAAGACAAGGAGGCAGCAAATATATTCTAGATTGCAATCAAGCATACCTGGAGTAAAAGCACAAAGGTGCTATACTGCTGCAACATTGGAGCTTTCTCAACCAGAAAATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTACCACAGAGTTGGAAAGACTTTTCAGAAAAGAAGATTTTGGTAGAATGAAGGTGATTGGGCAATTCAATCTTGGCTTCATTATTGGGAAATTAGATCAAGATTTATTTATCGTAGATCAGCATGCAGCTGATGAGAAGTACAATTTTGAGCGCCTGTCACAATCTACCATCTTAAACCAACAGCCTTTGCTTAGGCCATTGAGGTTGGAGTTATCTCCTGAAGAAGAAGTTGTTGCTTCAATGCACATGGACGTAATCAGGAAAAATGGATTTTCTTTGGAAGAGGATCTACATGCTCCGCCTGGTCACCATTTTAAATTGAAAGCTGTTCCCTTCAGTAAAAACATAACTTTTGGAGTTGAAGATGTGAAGGATTTGATATCCACTCTTGCTGATAGTCATGGGGAATGCTCAATCATCGGTAGTTACAAGATGGACACTGTTGACTCCGTTTGCCCTTCTAGAGTTCGCGCGATGCTGGCATCACGTGCATGCAGATCATCTGTTATGATTGGAGATGCCCTCGGAAGAAATGAGATGCGGAAGATTCTTGAGCATCTGGCAGGTCTGAAGTCTCCTTGGAATTGCCCTCATGGCAGGCCAACCATGAGACATTTGATTGATTTGAAAACCATACACAGGTCTGAAGAAAACGATGATGCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

942

Amino Acids

103.45

Weight (kDa)

7.0

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	31 - 87	2.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	34 - 136	4e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	227 - 344	7e-25	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	738 - 894	2e-25	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02460 AT4G02460 AT4G02460 AT4G02460
fragaria_vesca	FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510
malus_domestica	MD11G1305800.v1.1
prunus_persica	Prupe.8G259200_v2.0.a1 Prupe.8G259200_v2.0.a1
pyrus_communis	pycom11g26760
rosa_chinensis	RchiOBHm_Chr6g0293721
rosa_laevigata	RLG00000011929
rosa_roxburghii	Rroxscaffold_7G00173950
rosa_rugosa	Rorug06G0237600
rosa_samantha	Rh6AG350400 Rh6BG357900 Rh6CG364700 Rh6DG351600
rosa_wichuraiana	Rw6G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	5 cut(s)	373, 439, 1083, 1209, 2711
AccB1I	GGYRCC	3 cut(s)	143, 455, 1870
AccBSI	CCGCTC	1 cut(s)	2131
AccI	GTMKAC	1 cut(s)	826
AccII	CGCG	5 cut(s)	164, 315, 445, 2628, 2630
AciI	CCGC	8 cut(s)	105, 213, 315, 445, 1331, 2131, 2456, 2698
AclWI	GGATC	5 cut(s)	82, 1302, 1756, 1769, 2451
AcoI	YGGCCR	2 cut(s)	79, 102
AcsI	RAATTY	4 cut(s)	349, 487, 913, 1381
AcuI	CTGAAG	8 cut(s)	1188, 1719, 1737, 1929, 2397, 2476, 2747, 2823
AcvI	CACGTG	1 cut(s)	2645
AcyI	GRCGYC	2 cut(s)	138, 144
AfaI	GTAC	5 cut(s)	377, 1272, 1410, 1521, 2297
AfiI	CCNNNNNNNGG	2 cut(s)	1970, 2796
AflII	CTTAAG	2 cut(s)	662, 1006
AgeI	ACCGGT	1 cut(s)	493
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	2 cut(s)	1037, 1436
AjnI	CCWGG	7 cut(s)	192, 365, 1237, 1792, 2007, 2062, 2458
AjuI	GAANNNNNNNTTGG	2 cut(s)	1951, 1983
AleI	CACNNNNGTG	1 cut(s)	2080
Alw21I	GWGCWC	2 cut(s)	698, 992
Alw26I	GTCTC	6 cut(s)	297, 1101, 1128, 1254, 2736, 2761
AlwI	GGATC	5 cut(s)	82, 1302, 1756, 1769, 2451
AlwNI	CAGNNNCTG	3 cut(s)	72, 295, 1856
AoxI	GGCC	6 cut(s)	79, 102, 321, 2142, 2351, 2756
ApoI	RAATTY	4 cut(s)	349, 487, 913, 1381
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	3 cut(s)	655, 971, 1173
AspLEI	GCGC	6 cut(s)	77, 146, 166, 445, 2310, 2630
AspS9I	GGNCC	6 cut(s)	61, 238, 369, 1426, 2011, 2142
AsuHPI	GGTGA	8 cut(s)	508, 1101, 1736, 1823, 1875, 1920, 2221, 2456
AvaII	GGWCC	5 cut(s)	61, 238, 369, 1426, 2011
AxyI	CCTNAGG	2 cut(s)	1290, 1604
BamHI	GGATCC	1 cut(s)	1761
BanI	GGYRCC	3 cut(s)	143, 455, 1870
BanII	GRGCYC	1 cut(s)	992
BarI	GAAGNNNNNNTAC	2 cut(s)	2430, 2462
BbrPI	CACGTG	1 cut(s)	2645
BbsI	GAAGAC	2 cut(s)	443, 1610
Bbv12I	GWGCWC	2 cut(s)	698, 992
BbvCI	CCTCAGC	1 cut(s)	1194
BccI	CCATC	6 cut(s)	40, 161, 746, 1744, 2333, 2584
BceAI	ACGGC	4 cut(s)	92, 193, 223, 456
BciT130I	CCWGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
BcoDI	GTCTC	6 cut(s)	297, 1101, 1128, 1254, 2736, 2761
BcuI	ACTAGT	2 cut(s)	1037, 1436
BfaI	CTAG	5 cut(s)	1038, 1140, 1437, 2043, 2619
BfmI	CTRYAG	3 cut(s)	1019, 1260, 2151
BfoI	RGCGCY	2 cut(s)	147, 2311
BfrI	CTTAAG	2 cut(s)	662, 1006
BfuAI	ACCTGC	5 cut(s)	373, 439, 1083, 1209, 2711
BglI	GCCNNNNNGGC	1 cut(s)	2751
BglII	AGATCT	1 cut(s)	1912
Bme1390I	CCNGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
Bme18I	GGWCC	5 cut(s)	61, 238, 369, 1426, 2011
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	6 cut(s)	61, 238, 369, 1426, 2011, 2142
BmiI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1610, 1763, 1872
BmrFI	CCNGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
BpiI	GAAGAC	2 cut(s)	443, 1610
BplI	GAGNNNNNCTC	2 cut(s)	2664, 2696
BpmI	CTGGAG	4 cut(s)	272, 1287, 1815, 2085
Bpu10I	CCTNAGC	3 cut(s)	1194, 2146, 2348
BpuEI	CTTGAG	4 cut(s)	233, 346, 2014, 2729
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	2645
BsaBI	GATNNNNATC	1 cut(s)	2050
BsaHI	GRCGYC	2 cut(s)	138, 144
BsaI	GGTCTC	3 cut(s)	1101, 1128, 1254
BsaJI	CCNNGG	4 cut(s)	57, 1429, 2680, 2735
BsaWI	WCCGGW	2 cut(s)	413, 493
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	1970, 2796
Bse118I	RCCGGY	3 cut(s)	77, 140, 493
Bse1I	ACTGG	3 cut(s)	289, 1537, 1784
Bse21I	CCTNAGG	2 cut(s)	1290, 1604
Bse8I	GATNNNNATC	1 cut(s)	2050
BseBI	CCWGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	57, 1429, 2680, 2735
BseGI	GGATG	4 cut(s)	696, 895, 1150, 1736
BseJI	GATNNNNATC	1 cut(s)	2050
BseLI	CCNNNNNNNGG	2 cut(s)	1970, 2796
BseMII	CTCAG	4 cut(s)	1112, 1185, 1281, 1471
BseNI	ACTGG	3 cut(s)	289, 1537, 1784
BseRI	GAGGAG	5 cut(s)	6, 1085, 1211, 1308, 2141
BseX3I	CGGCCG	1 cut(s)	102
BseYI	CCCAGC	2 cut(s)	888, 1886
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	5 cut(s)	164, 315, 445, 2628, 2630
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	6 cut(s)	81, 104, 323, 2144, 2353, 2758
BshNI	GGYRCC	3 cut(s)	143, 455, 1870
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	698, 992
BsiSI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	1970, 2796
BsmAI	GTCTC	6 cut(s)	297, 1101, 1128, 1254, 2736, 2761
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	3 cut(s)	565, 610, 2570
BsnI	GGCC	6 cut(s)	81, 104, 323, 2144, 2353, 2758
Bso31I	GGTCTC	3 cut(s)	1101, 1128, 1254
Bsp1286I	GDGCHC	2 cut(s)	698, 992
Bsp1407I	TGTACA	1 cut(s)	1519
Bsp19I	CCATGG	1 cut(s)	1429
BspACI	CCGC	8 cut(s)	105, 213, 315, 445, 1331, 2131, 2456, 2698
BspANI	GGCC	6 cut(s)	81, 104, 323, 2144, 2353, 2758
BspCNI	CTCAG	4 cut(s)	1111, 1186, 1282, 1470
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	5 cut(s)	164, 315, 445, 2628, 2630
BspHI	TCATGA	1 cut(s)	1354
BspLI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1610, 1763, 1872
BspMAI	CTGCAG	2 cut(s)	1023, 2155
BspMI	ACCTGC	5 cut(s)	373, 439, 1083, 1209, 2711
BspPI	GGATC	5 cut(s)	82, 1302, 1756, 1769, 2451
BspT107I	GGYRCC	3 cut(s)	143, 455, 1870
BspTI	CTTAAG	2 cut(s)	662, 1006
BspTNI	GGTCTC	3 cut(s)	1101, 1128, 1254
BsrBI	CCGCTC	1 cut(s)	2131
BsrFI	RCCGGY	3 cut(s)	77, 140, 493
BsrGI	TGTACA	1 cut(s)	1519
BsrI	ACTGG	3 cut(s)	289, 1537, 1784
BssAI	RCCGGY	3 cut(s)	77, 140, 493
BssECI	CCNNGG	4 cut(s)	57, 1429, 2680, 2735
BssNI	GRCGYC	2 cut(s)	138, 144
BssT1I	CCWWGG	2 cut(s)	1429, 2735
Bst2UI	CCWGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
Bst4CI	ACNGT	7 cut(s)	358, 463, 469, 922, 1549, 1582, 2599
Bst6I	CTCTTC	1 cut(s)	2433
BstACI	GRCGYC	2 cut(s)	138, 144
BstAFI	CTTAAG	2 cut(s)	662, 1006
BstAPI	GCANNNNNTGC	2 cut(s)	1877, 2645
BstAUI	TGTACA	1 cut(s)	1519
BstBAI	YACGTR	1 cut(s)	2645
BstC8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1920, 2280, 2637, 2650, 2756
BstDEI	CTNAG	8 cut(s)	1098, 1194, 1290, 1457, 1604, 1670, 2146, 2348
BstDSI	CCRYGG	2 cut(s)	57, 1429
BstEII	GGTNACC	1 cut(s)	2462
BstF5I	GGATG	4 cut(s)	696, 895, 1150, 1736
BstFNI	CGCG	5 cut(s)	164, 315, 445, 2628, 2630
BstH2I	RGCGCY	2 cut(s)	147, 2311
BstHHI	GCGC	6 cut(s)	77, 146, 166, 445, 2310, 2630
BstMAI	GTCTC	6 cut(s)	297, 1101, 1128, 1254, 2736, 2761
BstMCI	CGRYCG	1 cut(s)	105
BstNI	CCWGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
BstNSI	RCATGY	4 cut(s)	841, 2282, 2453, 2652
BstPI	GGTNACC	1 cut(s)	2462
BstSCI	CCNGG	7 cut(s)	192, 365, 1237, 1792, 2007, 2062, 2458
BstSFI	CTRYAG	3 cut(s)	1019, 1260, 2151
BstUI	CGCG	5 cut(s)	164, 315, 445, 2628, 2630
BstV2I	GAAGAC	2 cut(s)	443, 1610
BstX2I	RGATCY	3 cut(s)	1761, 1912, 2443
BstXI	CCANNNNNNTGG	1 cut(s)	2167
BstYI	RGATCY	3 cut(s)	1761, 1912, 2443
BstZI	CGGCCG	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	2 cut(s)	1290, 1604
BsuRI	GGCC	6 cut(s)	81, 104, 323, 2144, 2353, 2758
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	57, 1429
BtgZI	GCGATG	2 cut(s)	1326, 2645
BtsCI	GGATG	4 cut(s)	696, 895, 1150, 1736
BtsI	GCAGTG	1 cut(s)	1857
BtsIMutI	CAGTG	3 cut(s)	918, 1857, 2595
BveI	ACCTGC	5 cut(s)	373, 439, 1083, 1209, 2711
Cac8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1920, 2280, 2637, 2650, 2756
CaiI	CAGNNNCTG	3 cut(s)	72, 295, 1856
CciI	TCATGA	1 cut(s)	1354
CfoI	GCGC	6 cut(s)	77, 146, 166, 445, 2310, 2630
Cfr10I	RCCGGY	3 cut(s)	77, 140, 493
Cfr13I	GGNCC	6 cut(s)	61, 238, 369, 1426, 2011, 2142
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	5 cut(s)	376, 1271, 1409, 1520, 2296
CspAI	ACCGGT	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	5 cut(s)	376, 1271, 1409, 1520, 2296
DdeI	CTNAG	8 cut(s)	1098, 1194, 1290, 1457, 1604, 1670, 2146, 2348
DinI	GGCGCC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	2473
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	79, 102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	2433
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	2433
EciI	GGCGGA	1 cut(s)	2445
Ecl136II	GAGCTC	1 cut(s)	990
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	1429, 2735
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	3 cut(s)	1101, 1128, 1254
Eco32I	GATATC	1 cut(s)	2538
Eco47I	GGWCC	5 cut(s)	61, 238, 369, 1426, 2011
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	8 cut(s)	1188, 1719, 1737, 1929, 2397, 2476, 2747, 2823
Eco72I	CACGTG	1 cut(s)	2645
Eco81I	CCTNAGG	2 cut(s)	1290, 1604
Eco91I	GGTNACC	1 cut(s)	2462
EcoICRI	GAGCTC	1 cut(s)	990
EcoO109I	RGGNCCY	3 cut(s)	238, 2011, 2142
EcoO65I	GGTNACC	1 cut(s)	2462
EcoRII	CCWGG	7 cut(s)	192, 365, 1237, 1792, 2007, 2062, 2458
EcoRV	GATATC	1 cut(s)	2538
EcoT14I	CCWWGG	2 cut(s)	1429, 2735
EcoT38I	GRGCYC	1 cut(s)	992
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	1429, 2735
FalI	AAGNNNNNCTT	2 cut(s)	959, 991
FaqI	GGGAC	1 cut(s)	786
FblI	GTMKAC	1 cut(s)	826
FokI	GGATG	4 cut(s)	703, 882, 1157, 1723
FriOI	GRGCYC	1 cut(s)	992
FspBI	CTAG	5 cut(s)	1038, 1140, 1437, 2043, 2619
GlaI	GCGC	6 cut(s)	76, 145, 165, 444, 2309, 2629
GsaI	CCCAGC	2 cut(s)	892, 1890
GsuI	CTGGAG	4 cut(s)	272, 1287, 1815, 2085
HaeII	RGCGCY	2 cut(s)	147, 2311
HaeIII	GGCC	6 cut(s)	81, 104, 323, 2144, 2353, 2758
HapII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	6 cut(s)	77, 146, 166, 445, 2310, 2630
Hin1I	GRCGYC	2 cut(s)	138, 144
Hin6I	GCGC	6 cut(s)	75, 144, 164, 443, 2308, 2628
HinP1I	GCGC	6 cut(s)	75, 144, 164, 443, 2308, 2628
HincII	GTYRAC	2 cut(s)	827, 2602
HindII	GTYRAC	2 cut(s)	827, 2602
HindIII	AAGCTT	1 cut(s)	854
HpaII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
HphI	GGTGA	8 cut(s)	508, 1101, 1736, 1823, 1875, 1920, 2221, 2456
Hpy166II	GTNNAC	8 cut(s)	64, 659, 827, 835, 1109, 1411, 1832, 2602
Hpy8I	GTNNAC	8 cut(s)	64, 659, 827, 835, 1109, 1411, 1832, 2602
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyCH4III	ACNGT	7 cut(s)	358, 463, 469, 922, 1549, 1582, 2599
HpyCH4IV	ACGT	3 cut(s)	302, 2409, 2644
HpyF3I	CTNAG	8 cut(s)	1098, 1194, 1290, 1457, 1604, 1670, 2146, 2348
HpySE526I	ACGT	3 cut(s)	302, 2409, 2644
Hsp92I	GRCGYC	2 cut(s)	138, 144
HspAI	GCGC	6 cut(s)	75, 144, 164, 443, 2308, 2628
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	77, 140
KroNI	GCCGGC	2 cut(s)	79, 142
LmnI	GCTCC	6 cut(s)	995, 1072, 1321, 2104, 2128, 2458
MaeI	CTAG	5 cut(s)	1038, 1140, 1437, 2043, 2619
MaeII	ACGT	3 cut(s)	302, 2409, 2644
MbiI	CCGCTC	1 cut(s)	2131
MfeI	CAATTG	1 cut(s)	1442
MflI	RGATCY	3 cut(s)	1761, 1912, 2443
MhlI	GDGCHC	2 cut(s)	698, 992
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	2597
MmeI	TCCRAC	4 cut(s)	767, 950, 2148, 2343
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	77, 140
MroXI	GAANNNNTTC	3 cut(s)	655, 971, 1173
MslI	CAYNNNNRTG	3 cut(s)	414, 2080, 2647
MspA1I	CMGCKG	2 cut(s)	1922, 2285
MspCI	CTTAAG	2 cut(s)	662, 1006
MspI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
MspR9I	CCNGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
MunI	CAATTG	1 cut(s)	1442
Mva1269I	GAATGC	3 cut(s)	565, 610, 2570
MvaI	CCWGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
MvnI	CGCG	5 cut(s)	164, 315, 445, 2628, 2630
NaeI	GCCGGC	2 cut(s)	79, 142
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1429
NgoMIV	GCCGGC	2 cut(s)	77, 140
NlaIV	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1610, 1763, 1872
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	676, 2313, 2462
NspI	RCATGY	4 cut(s)	841, 2282, 2453, 2652
OliI	CACNNNNGTG	1 cut(s)	2080
PaeI	GCATGC	2 cut(s)	2282, 2652
PagI	TCATGA	1 cut(s)	1354
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	3 cut(s)	565, 610, 2570
PdiI	GCCGGC	2 cut(s)	79, 142
PdmI	GAANNNNTTC	3 cut(s)	655, 971, 1173
PfoI	TCCNGGA	2 cut(s)	1792, 2007
PinAI	ACCGGT	1 cut(s)	493
PleI	GAGTC	1 cut(s)	2597
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	2645
PmlI	CACGTG	1 cut(s)	2645
PpsI	GAGTC	1 cut(s)	2597
Ppu21I	YACGTR	1 cut(s)	2645
PpuMI	RGGWCCY	2 cut(s)	238, 2011
Psp124BI	GAGCTC	1 cut(s)	992
Psp5II	RGGWCCY	2 cut(s)	238, 2011
Psp6I	CCWGG	7 cut(s)	192, 365, 1237, 1792, 2007, 2062, 2458
PspCI	CACGTG	1 cut(s)	2645
PspEI	GGTNACC	1 cut(s)	2462
PspFI	CCCAGC	2 cut(s)	888, 1886
PspGI	CCWGG	7 cut(s)	192, 365, 1237, 1792, 2007, 2062, 2458
PspN4I	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1610, 1763, 1872
PspPI	GGNCC	6 cut(s)	61, 238, 369, 1426, 2011, 2142
PspPPI	RGGWCCY	2 cut(s)	238, 2011
PstI	CTGCAG	2 cut(s)	1023, 2155
PstNI	CAGNNNCTG	3 cut(s)	72, 295, 1856
PsuI	RGATCY	3 cut(s)	1761, 1912, 2443
PvuII	CAGCTG	2 cut(s)	1922, 2285
RsaI	GTAC	5 cut(s)	377, 1272, 1410, 1521, 2297
RsaNI	GTAC	5 cut(s)	376, 1271, 1409, 1520, 2296
RseI	CAYNNNNRTG	3 cut(s)	414, 2080, 2647
SacI	GAGCTC	1 cut(s)	992
SalI	GTCGAC	1 cut(s)	825
Sau96I	GGNCC	6 cut(s)	61, 238, 369, 1426, 2011, 2142
SchI	GAGTC	1 cut(s)	2597
ScrFI	CCNGG	7 cut(s)	194, 367, 1239, 1794, 2009, 2064, 2460
SduI	GDGCHC	2 cut(s)	698, 992
SfcI	CTRYAG	3 cut(s)	1019, 1260, 2151
SfoI	GGCGCC	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	5 cut(s)	61, 238, 369, 1426, 2011
SmiMI	CAYNNNNRTG	3 cut(s)	414, 2080, 2647
SmlI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 1993, 2708
SmoI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 1993, 2708
SpeI	ACTAGT	2 cut(s)	1037, 1436
SphI	GCATGC	2 cut(s)	2282, 2652
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	8 cut(s)	105, 213, 315, 445, 1331, 2131, 2456, 2698
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	673, 1745
SspMI	CTAG	5 cut(s)	1038, 1140, 1437, 2043, 2619
SstI	GAGCTC	1 cut(s)	992
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	7 cut(s)	192, 365, 1237, 1792, 2007, 2062, 2458
StyI	CCWWGG	2 cut(s)	1429, 2735
TaaI	ACNGT	7 cut(s)	358, 463, 469, 922, 1549, 1582, 2599
TaiI	ACGT	3 cut(s)	305, 2412, 2647
TaqI	TCGA	9 cut(s)	93, 123, 135, 156, 201, 826, 1477, 1949, 1988
TatI	WGTACW	3 cut(s)	1408, 1519, 2295
TauI	GCSGC	4 cut(s)	107, 216, 318, 448
TscAI	CASTG	3 cut(s)	925, 1857, 2602
TseFI	GTSAC	3 cut(s)	676, 2313, 2462
Tsp45I	GTSAC	3 cut(s)	676, 2313, 2462
TspDTI	ATGAA	6 cut(s)	1392, 1481, 1488, 1610, 2219, 2224
TspGWI	ACGGA	4 cut(s)	9, 46, 443, 2596
TspRI	CASTG	3 cut(s)	925, 1857, 2602
Vha464I	CTTAAG	2 cut(s)	662, 1006
VpaK11BI	GGWCC	5 cut(s)	61, 238, 369, 1426, 2011
XapI	RAATTY	4 cut(s)	349, 487, 913, 1381
XbaI	TCTAGA	2 cut(s)	2042, 2618
XceI	RCATGY	4 cut(s)	841, 2282, 2453, 2652
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	3 cut(s)	655, 971, 1173
XspI	CTAG	5 cut(s)	1038, 1140, 1437, 2043, 2619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.