Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009282

Physical Location & Seq

Genomic Coordinates Forward (+)

54632346 .. 54637710

Gene Structure 5365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2838 bp

ATGGAGGCGACCACTCCTCCTTCCGATTCTCCATCTATAAAACCCATAAACAAGTCCGTGGTCCACAGAATCTGCGCCGGCCAAGTGATCCTCGACCTCTCGGCCGCCGTCAAAGAATTGGTCGAGAACAGCCTCGACGCCGGCGCCACCACCATCGAGATCGCGCTCAAAGACTACGGCAAAGAGTGGTTCCAGGTCATCGATAACGGCTGTGGCATTTCGCCCAACAACTTCAAGGTCCTTGCCCTCAAGCACCACACTTCCAAACTCGCCGGATTCCCTGACCTCCAGTCTCTGACGACGTTCGGGTTTCGCGGCGAGGCCTTGAGTTCTCTGTGTGCTTTGGGGAATTTAACGGTGGAAACCAGGACCAAATACGAGCAGGTCGCCACGCACTTGACTTTTGACCATTCCGGTGTGTTGGTAACGGAAAAGAAGACGGCGCGGCAGGTCGGCACCACCGTAACGGTCAAGAATCTGTTTGTGAATTTACCGGTGAGGTGCAAGGAGTTCAGTCGCAACATTCGGAAGGAGTATGGGAAGCTGGTTTCTCTATTGAATGCCTATGCTCTTATTGCGAAAGGGGTTCGGTTAGTCTGCACGAATGCCATAGGTAGAAATGCAAAGTCTGTGGTGCTTAAAACGCAAGGAAGTGGTTCACTTAAGGATAATATTCTGACATTGTTTGGGATGAGCACTTTCAGTTGTTTAGAGCCTGTGAGTATATCTGCATCTGATAGTTGCAAGGTTGATGGTTTCCTTTCCAAGTCGGGACAAGGTAGTGGTCGGAACATGGGAGATAGGCAGTTCTTTTTTGTGAATGGTCGACCGGTGGATATGCCTAAAATTACAAAGCTTGTGAATGAGTTGTATAGAGGGGCAAACTCCCAGCAGCATCCTATTGCCATATTGAATTTCACTGTTCCGACAAGAGCGTGTGATGTCAATGTTACTCCTGATAAAAGGAAAGTGTTCTTTTCTGATGAGAGCTCCATACTTGTTGCCTTAAGGGAGGGTCTGCAGCAGATATATTCCACCAGTAATGCTCGTTACTCTGTTAATAAAGTGGAGGAGCCTGCCAAAGAAGCAGGCAGGTCTCAGTTGTGTTCACCTCATCAAAGGTCTCATAAACAATTAGCTAGGGATGATAATGATGATGATGTTCCTGAAGAAGTTCGTCCGGCTGATAAAGCTGAGGAGGCTACAAAAGAAGGAGGCAGGTCTGAATTGTGTTTTCCTGGTCAGAGGTCTCATATGTTTCTGAGACAATCCTCTATAGATTCTGTACCTAAAGAAGTTAGTCCTGAGGATCACACTCCAGAAGGCGATGCTCCTCTGAAAGCTGCGGAAACTGATTCTGAAACTAATCATGATGAGGAAGGGTTTAGCCATGAAAATTCAATGGGGAAGGATTTTGCTTTAAGAGTACACAGCATTAAGAAGGTCCATGGAACTAGTCAATTGACAAAGAATCTCAGTAGTATGAAAGCTGATCGAATTGCAGCAAATGAAGATTCATGTAGTCATTCAAGCTCTGTACAAGCATCAATTAACCAGTTTGTAACTGTAACTAAAAGAAAACATGCTAGTATTAGCACAGTCCTGTCTGAAATGCCTGTCCTAAGGAACCAAAGTCTTCATTGTCAATCCAAGAATGATTTACTTAATGCTGTTTCAAAACCCCCACTTAGTCATCAGCAGATCAATGATTCTACTGAAGTTGATAATTCTGCTGAAGCTGGTGAGAATGAGCCATCCAAATATTTTAGAGTAGATAGGATCCTCAACAAAATTAGAGTTCCAGTTTCTCCTGGAGACAAGATTGAGGGTGAAGGATATGGAGAAGCTCAACAGAAAGCAGTGCCTGTTGCTGATATGGCACCAACTGCTTCACCCAGCAGGGATATAAGTCTGTCTGAAGATCTGCCAGCTGCATCACCTTCTTCTTGTATATTGTCGAATACTCCAAACCCTTCTTCTGGTCTTATGATGTGTTCAACCTTGAGATTTAGTTTCCAGGACCTAAAGACAAGGAGGCAGCAAATATATTCTAGATTGCAATCAAGCATACCTGGAGTAAAAGCACAAAGGTGCTATACTGCTGCAACACTGGAGCTTTCTCAACCAGAAAATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTACCACGGAGTTGGAAAGACTTTTCAGAAAAGAAGATTTTGGTAGAATGAAGGTGATTGGGCAATTCAATCTTGGCTTCATTATTGGGAAATTAGATCAAGATTTATTTATCGTAGATCAGCATGCAGCTGATGAGAAGTACAATTTTGAGCGCCTGTCACAATCTACCATCTTAAACCAACAGCCTTTGCTTAGGCCATTGAGGTTGGAGTTATCTCCTGAAGAAGAAGTTGTTGCTTCAATGCACATGGACGTAATCAGGAAAAATGGATTTTCTTTGGAAGAGGATCTACATGCTCCGCCTGGTCACCATTTTAAATTGAAAGCTGTTCCCTTCAGTAAAAACATAACTTTTGGAGTTGAAGATGTGAAGGACTTGATATCCACTCTTGCTGATAGTCATGGGGAATGCTCAATCATCGGTAGTTACAAGATGGACACTGTTGACTCTGTTTGCCCTTCTAGAGTTCGCGCGATGCTGGCATCACGTGCATGCAGATCATCTGTTATGATTGGAGATGCCCTCGGAAGAAATGAGATGCGGAAGATTCTTGAGCATCTGGCGGGTCTGAAGTCTCCTTGGAATTGCCCTCATGGCAGGCCAACCATGCGACATTTGATTGATTTGAAAACCATGCACAGGTCTGAAGAAAACGATGATGCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

945

Amino Acids

104.06

Weight (kDa)

6.99

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	31 - 87	2.3e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	34 - 136	4.1e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	226 - 344	3.3e-25	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	741 - 897	2e-25	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02460 AT4G02460 AT4G02460 AT4G02460
fragaria_vesca	FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510
malus_domestica	MD11G1305800.v1.1
prunus_persica	Prupe.8G259200_v2.0.a1 Prupe.8G259200_v2.0.a1
pyrus_communis	pycom11g26760
rosa_chinensis	RchiOBHm_Chr6g0293721
rosa_laevigata	RLG00000011929
rosa_roxburghii	Rroxscaffold_7G00173950
rosa_rugosa	Rorug06G0237600
rosa_samantha	Rh6AG350400 Rh6BG357900 Rh6CG364700 Rh6DG351600
rosa_wichuraiana	Rw6G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	373, 439, 1083, 1209
AccB1I	GGYRCC	3 cut(s)	143, 455, 1879
AccBSI	CCGCTC	1 cut(s)	2140
AccI	GTMKAC	1 cut(s)	826
AccII	CGCG	5 cut(s)	164, 315, 445, 2637, 2639
AciI	CCGC	8 cut(s)	105, 315, 445, 1346, 2140, 2465, 2707, 2729
AclWI	GGATC	5 cut(s)	82, 1317, 1774, 1787, 2460
AcoI	YGGCCR	2 cut(s)	79, 102
AcsI	RAATTY	4 cut(s)	349, 487, 913, 1396
AcuI	CTGAAG	8 cut(s)	1188, 1737, 1755, 1938, 2406, 2485, 2756, 2832
AcvI	CACGTG	1 cut(s)	2654
AcyI	GRCGYC	2 cut(s)	138, 144
AfaI	GTAC	4 cut(s)	1287, 1428, 1539, 2306
AfiI	CCNNNNNNNGG	2 cut(s)	1979, 2805
AflII	CTTAAG	2 cut(s)	662, 1006
AgeI	ACCGGT	2 cut(s)	493, 829
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	1 cut(s)	1454
AjnI	CCWGG	7 cut(s)	192, 365, 1237, 1810, 2016, 2071, 2467
AjuI	GAANNNNNNNTTGG	2 cut(s)	1960, 1992
AleI	CACNNNNGTG	1 cut(s)	2089
Alw21I	GWGCWC	2 cut(s)	698, 992
Alw26I	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 1809, 2745
AlwI	GGATC	5 cut(s)	82, 1317, 1774, 1787, 2460
AlwNI	CAGNNNCTG	3 cut(s)	72, 295, 1865
AoxI	GGCC	6 cut(s)	79, 102, 321, 2151, 2360, 2765
ApoI	RAATTY	4 cut(s)	349, 487, 913, 1396
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	2 cut(s)	493, 829
Asp700I	GAANNNNTTC	3 cut(s)	655, 971, 1173
AspLEI	GCGC	6 cut(s)	77, 146, 166, 445, 2319, 2639
AspS9I	GGNCC	6 cut(s)	61, 238, 369, 1444, 2020, 2151
AsuHPI	GGTGA	8 cut(s)	508, 1101, 1754, 1841, 1884, 1929, 2230, 2465
AvaII	GGWCC	5 cut(s)	61, 238, 369, 1444, 2020
AxyI	CCTNAGG	2 cut(s)	1305, 1622
BamHI	GGATCC	1 cut(s)	1779
BanI	GGYRCC	3 cut(s)	143, 455, 1879
BanII	GRGCYC	1 cut(s)	992
BarI	GAAGNNNNNNTAC	2 cut(s)	2439, 2471
BbrPI	CACGTG	1 cut(s)	2654
BbsI	GAAGAC	2 cut(s)	443, 1628
Bbv12I	GWGCWC	2 cut(s)	698, 992
BbvCI	CCTCAGC	1 cut(s)	1194
BccI	CCATC	6 cut(s)	40, 161, 746, 1762, 2342, 2593
BceAI	ACGGC	4 cut(s)	92, 193, 223, 456
BciT130I	CCWGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
BcoDI	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 1809, 2745
BcuI	ACTAGT	1 cut(s)	1454
BfaI	CTAG	5 cut(s)	1140, 1455, 1587, 2052, 2628
BfmI	CTRYAG	3 cut(s)	1019, 1275, 2160
BfoI	RGCGCY	2 cut(s)	147, 2320
BfrI	CTTAAG	2 cut(s)	662, 1006
BfuAI	ACCTGC	4 cut(s)	373, 439, 1083, 1209
BglI	GCCNNNNNGGC	1 cut(s)	2760
BglII	AGATCT	1 cut(s)	1921
Bme1390I	CCNGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
Bme18I	GGWCC	5 cut(s)	61, 238, 369, 1444, 2020
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	6 cut(s)	61, 238, 369, 1444, 2020, 2151
BmiI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1628, 1781, 1881
BmrFI	CCNGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
BpiI	GAAGAC	2 cut(s)	443, 1628
BplI	GAGNNNNNCTC	2 cut(s)	2673, 2705
BpmI	CTGGAG	5 cut(s)	272, 1302, 1833, 2094, 2132
Bpu10I	CCTNAGC	3 cut(s)	1194, 2155, 2357
BpuEI	CTTGAG	4 cut(s)	233, 346, 2023, 2738
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	2654
BsaBI	GATNNNNATC	1 cut(s)	2059
BsaHI	GRCGYC	2 cut(s)	138, 144
BsaI	GGTCTC	3 cut(s)	1101, 1128, 1254
BsaJI	CCNNGG	5 cut(s)	57, 1447, 2169, 2689, 2744
BsaWI	WCCGGW	3 cut(s)	413, 493, 829
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	1979, 2805
Bse118I	RCCGGY	4 cut(s)	77, 140, 493, 829
Bse1I	ACTGG	5 cut(s)	289, 1038, 1555, 1802, 2115
Bse21I	CCTNAGG	2 cut(s)	1305, 1622
Bse8I	GATNNNNATC	1 cut(s)	2059
BseBI	CCWGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	5 cut(s)	57, 1447, 2169, 2689, 2744
BseGI	GGATG	4 cut(s)	696, 895, 1150, 1754
BseJI	GATNNNNATC	1 cut(s)	2059
BseLI	CCNNNNNNNGG	2 cut(s)	1979, 2805
BseMII	CTCAG	5 cut(s)	1112, 1185, 1253, 1296, 1489
BseNI	ACTGG	5 cut(s)	289, 1038, 1555, 1802, 2115
BseRI	GAGGAG	5 cut(s)	6, 1085, 1211, 1323, 2150
BseX3I	CGGCCG	1 cut(s)	102
BseYI	CCCAGC	2 cut(s)	888, 1895
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	5 cut(s)	164, 315, 445, 2637, 2639
Bsh1285I	CGRYCG	2 cut(s)	105, 830
BshFI	GGCC	6 cut(s)	81, 104, 323, 2153, 2362, 2767
BshNI	GGYRCC	3 cut(s)	143, 455, 1879
BshTI	ACCGGT	2 cut(s)	493, 829
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	105, 830
BsiHKAI	GWGCWC	2 cut(s)	698, 992
BsiSI	CCGG	7 cut(s)	78, 141, 273, 414, 494, 830, 1181
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	1979, 2805
BsmAI	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 1809, 2745
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	3 cut(s)	565, 610, 2579
BsnI	GGCC	6 cut(s)	81, 104, 323, 2153, 2362, 2767
Bso31I	GGTCTC	3 cut(s)	1101, 1128, 1254
Bsp1286I	GDGCHC	2 cut(s)	698, 992
Bsp1407I	TGTACA	1 cut(s)	1537
Bsp19I	CCATGG	1 cut(s)	1447
BspACI	CCGC	8 cut(s)	105, 315, 445, 1346, 2140, 2465, 2707, 2729
BspANI	GGCC	6 cut(s)	81, 104, 323, 2153, 2362, 2767
BspCNI	CTCAG	5 cut(s)	1111, 1186, 1254, 1297, 1488
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	5 cut(s)	164, 315, 445, 2637, 2639
BspHI	TCATGA	1 cut(s)	1369
BspLI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1628, 1781, 1881
BspMAI	CTGCAG	2 cut(s)	1023, 2164
BspMI	ACCTGC	4 cut(s)	373, 439, 1083, 1209
BspPI	GGATC	5 cut(s)	82, 1317, 1774, 1787, 2460
BspT107I	GGYRCC	3 cut(s)	143, 455, 1879
BspTI	CTTAAG	2 cut(s)	662, 1006
BspTNI	GGTCTC	3 cut(s)	1101, 1128, 1254
BsrBI	CCGCTC	1 cut(s)	2140
BsrFI	RCCGGY	4 cut(s)	77, 140, 493, 829
BsrGI	TGTACA	1 cut(s)	1537
BsrI	ACTGG	5 cut(s)	289, 1038, 1555, 1802, 2115
BssAI	RCCGGY	4 cut(s)	77, 140, 493, 829
BssECI	CCNNGG	5 cut(s)	57, 1447, 2169, 2689, 2744
BssNI	GRCGYC	2 cut(s)	138, 144
BssT1I	CCWWGG	2 cut(s)	1447, 2744
Bst2UI	CCWGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
Bst4CI	ACNGT	7 cut(s)	358, 463, 469, 922, 1567, 1600, 2608
Bst6I	CTCTTC	1 cut(s)	2442
BstACI	GRCGYC	2 cut(s)	138, 144
BstAFI	CTTAAG	2 cut(s)	662, 1006
BstAPI	GCANNNNNTGC	2 cut(s)	1886, 2654
BstAUI	TGTACA	1 cut(s)	1537
BstBAI	YACGTR	1 cut(s)	2654
BstC8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1929, 2289, 2646, 2659, 2765
BstDEI	CTNAG	9 cut(s)	1098, 1194, 1262, 1305, 1475, 1622, 1688, 2155, 2357
BstDSI	CCRYGG	3 cut(s)	57, 1447, 2169
BstEII	GGTNACC	1 cut(s)	2471
BstF5I	GGATG	4 cut(s)	696, 895, 1150, 1754
BstFNI	CGCG	5 cut(s)	164, 315, 445, 2637, 2639
BstH2I	RGCGCY	2 cut(s)	147, 2320
BstHHI	GCGC	6 cut(s)	77, 146, 166, 445, 2319, 2639
BstMAI	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 1809, 2745
BstMCI	CGRYCG	2 cut(s)	105, 830
BstNI	CCWGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
BstNSI	RCATGY	4 cut(s)	1586, 2291, 2462, 2661
BstPI	GGTNACC	1 cut(s)	2471
BstSCI	CCNGG	7 cut(s)	192, 365, 1237, 1810, 2016, 2071, 2467
BstSFI	CTRYAG	3 cut(s)	1019, 1275, 2160
BstUI	CGCG	5 cut(s)	164, 315, 445, 2637, 2639
BstV2I	GAAGAC	2 cut(s)	443, 1628
BstX2I	RGATCY	3 cut(s)	1779, 1921, 2452
BstXI	CCANNNNNNTGG	1 cut(s)	2176
BstYI	RGATCY	3 cut(s)	1779, 1921, 2452
BstZI	CGGCCG	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	2 cut(s)	1305, 1622
BsuRI	GGCC	6 cut(s)	81, 104, 323, 2153, 2362, 2767
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	3 cut(s)	57, 1447, 2169
BtgZI	GCGATG	2 cut(s)	1341, 2654
BtsCI	GGATG	4 cut(s)	696, 895, 1150, 1754
BtsI	GCAGTG	1 cut(s)	1866
BtsIMutI	CAGTG	4 cut(s)	918, 1866, 2108, 2604
BveI	ACCTGC	4 cut(s)	373, 439, 1083, 1209
Cac8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1929, 2289, 2646, 2659, 2765
CaiI	CAGNNNCTG	3 cut(s)	72, 295, 1865
CciI	TCATGA	1 cut(s)	1369
CfoI	GCGC	6 cut(s)	77, 146, 166, 445, 2319, 2639
Cfr10I	RCCGGY	4 cut(s)	77, 140, 493, 829
Cfr13I	GGNCC	6 cut(s)	61, 238, 369, 1444, 2020, 2151
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	4 cut(s)	1286, 1427, 1538, 2305
CspAI	ACCGGT	2 cut(s)	493, 829
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	4 cut(s)	1286, 1427, 1538, 2305
DdeI	CTNAG	9 cut(s)	1098, 1194, 1262, 1305, 1475, 1622, 1688, 2155, 2357
DinI	GGCGCC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	2482
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	79, 102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	2442
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	2442
EciI	GGCGGA	1 cut(s)	2454
Ecl136II	GAGCTC	1 cut(s)	990
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	1447, 2744
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	3 cut(s)	1101, 1128, 1254
Eco32I	GATATC	1 cut(s)	2547
Eco47I	GGWCC	5 cut(s)	61, 238, 369, 1444, 2020
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	8 cut(s)	1188, 1737, 1755, 1938, 2406, 2485, 2756, 2832
Eco72I	CACGTG	1 cut(s)	2654
Eco81I	CCTNAGG	2 cut(s)	1305, 1622
Eco91I	GGTNACC	1 cut(s)	2471
EcoICRI	GAGCTC	1 cut(s)	990
EcoO109I	RGGNCCY	3 cut(s)	238, 2020, 2151
EcoO65I	GGTNACC	1 cut(s)	2471
EcoRII	CCWGG	7 cut(s)	192, 365, 1237, 1810, 2016, 2071, 2467
EcoRV	GATATC	1 cut(s)	2547
EcoT14I	CCWWGG	2 cut(s)	1447, 2744
EcoT38I	GRGCYC	1 cut(s)	992
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	1447, 2744
FaqI	GGGAC	1 cut(s)	786
FauI	CCCGC	1 cut(s)	2722
FauNDI	CATATG	1 cut(s)	1254
FblI	GTMKAC	1 cut(s)	826
FokI	GGATG	4 cut(s)	703, 882, 1157, 1741
FriOI	GRGCYC	1 cut(s)	992
FspBI	CTAG	5 cut(s)	1140, 1455, 1587, 2052, 2628
GlaI	GCGC	6 cut(s)	76, 145, 165, 444, 2318, 2638
GsaI	CCCAGC	2 cut(s)	892, 1899
GsuI	CTGGAG	5 cut(s)	272, 1302, 1833, 2094, 2132
HaeII	RGCGCY	2 cut(s)	147, 2320
HaeIII	GGCC	6 cut(s)	81, 104, 323, 2153, 2362, 2767
HapII	CCGG	7 cut(s)	78, 141, 273, 414, 494, 830, 1181
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	6 cut(s)	77, 146, 166, 445, 2319, 2639
Hin1I	GRCGYC	2 cut(s)	138, 144
Hin6I	GCGC	6 cut(s)	75, 144, 164, 443, 2317, 2637
HinP1I	GCGC	6 cut(s)	75, 144, 164, 443, 2317, 2637
HincII	GTYRAC	2 cut(s)	827, 2611
HindII	GTYRAC	2 cut(s)	827, 2611
HindIII	AAGCTT	1 cut(s)	854
HpaII	CCGG	7 cut(s)	78, 141, 273, 414, 494, 830, 1181
HphI	GGTGA	8 cut(s)	508, 1101, 1754, 1841, 1884, 1929, 2230, 2465
Hpy166II	GTNNAC	6 cut(s)	64, 659, 827, 1109, 1429, 2611
Hpy8I	GTNNAC	6 cut(s)	64, 659, 827, 1109, 1429, 2611
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyCH4III	ACNGT	7 cut(s)	358, 463, 469, 922, 1567, 1600, 2608
HpyCH4IV	ACGT	3 cut(s)	302, 2418, 2653
HpyF3I	CTNAG	9 cut(s)	1098, 1194, 1262, 1305, 1475, 1622, 1688, 2155, 2357
HpySE526I	ACGT	3 cut(s)	302, 2418, 2653
Hsp92I	GRCGYC	2 cut(s)	138, 144
HspAI	GCGC	6 cut(s)	75, 144, 164, 443, 2317, 2637
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	77, 140
KroNI	GCCGGC	2 cut(s)	79, 142
LmnI	GCTCC	6 cut(s)	995, 1072, 1336, 2113, 2137, 2467
MaeI	CTAG	5 cut(s)	1140, 1455, 1587, 2052, 2628
MaeII	ACGT	3 cut(s)	302, 2418, 2653
MaeIII	GTNAC	9 cut(s)	424, 463, 949, 1049, 1561, 1567, 2322, 2471, 2591
MbiI	CCGCTC	1 cut(s)	2140
MfeI	CAATTG	1 cut(s)	1460
MflI	RGATCY	3 cut(s)	1779, 1921, 2452
MhlI	GDGCHC	2 cut(s)	698, 992
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	2606
MmeI	TCCRAC	4 cut(s)	767, 950, 2157, 2352
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	77, 140
MroXI	GAANNNNTTC	3 cut(s)	655, 971, 1173
MslI	CAYNNNNRTG	3 cut(s)	414, 2089, 2656
MspA1I	CMGCKG	2 cut(s)	1931, 2294
MspCI	CTTAAG	2 cut(s)	662, 1006
MspI	CCGG	7 cut(s)	78, 141, 273, 414, 494, 830, 1181
MspR9I	CCNGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
MunI	CAATTG	1 cut(s)	1460
Mva1269I	GAATGC	3 cut(s)	565, 610, 2579
MvaI	CCWGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
MvnI	CGCG	5 cut(s)	164, 315, 445, 2637, 2639
NaeI	GCCGGC	2 cut(s)	79, 142
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1447
NdeI	CATATG	1 cut(s)	1254
NgoMIV	GCCGGC	2 cut(s)	77, 140
NlaIV	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1628, 1781, 1881
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	2322, 2471
NspI	RCATGY	4 cut(s)	1586, 2291, 2462, 2661
OliI	CACNNNNGTG	1 cut(s)	2089
PaeI	GCATGC	2 cut(s)	2291, 2661
PagI	TCATGA	1 cut(s)	1369
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	3 cut(s)	565, 610, 2579
PdiI	GCCGGC	2 cut(s)	79, 142
PdmI	GAANNNNTTC	3 cut(s)	655, 971, 1173
PfoI	TCCNGGA	2 cut(s)	1810, 2016
PinAI	ACCGGT	2 cut(s)	493, 829
PleI	GAGTC	1 cut(s)	2606
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	2654
PmlI	CACGTG	1 cut(s)	2654
PpsI	GAGTC	1 cut(s)	2606
Ppu21I	YACGTR	1 cut(s)	2654
PpuMI	RGGWCCY	2 cut(s)	238, 2020
Psp124BI	GAGCTC	1 cut(s)	992
Psp5II	RGGWCCY	2 cut(s)	238, 2020
Psp6I	CCWGG	7 cut(s)	192, 365, 1237, 1810, 2016, 2071, 2467
PspCI	CACGTG	1 cut(s)	2654
PspEI	GGTNACC	1 cut(s)	2471
PspFI	CCCAGC	2 cut(s)	888, 1895
PspGI	CCWGG	7 cut(s)	192, 365, 1237, 1810, 2016, 2071, 2467
PspN4I	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1628, 1781, 1881
PspPI	GGNCC	6 cut(s)	61, 238, 369, 1444, 2020, 2151
PspPPI	RGGWCCY	2 cut(s)	238, 2020
PstI	CTGCAG	2 cut(s)	1023, 2164
PstNI	CAGNNNCTG	3 cut(s)	72, 295, 1865
PsuI	RGATCY	3 cut(s)	1779, 1921, 2452
PvuII	CAGCTG	2 cut(s)	1931, 2294
RsaI	GTAC	4 cut(s)	1287, 1428, 1539, 2306
RsaNI	GTAC	4 cut(s)	1286, 1427, 1538, 2305
RseI	CAYNNNNRTG	3 cut(s)	414, 2089, 2656
SacI	GAGCTC	1 cut(s)	992
SalI	GTCGAC	1 cut(s)	825
Sau96I	GGNCC	6 cut(s)	61, 238, 369, 1444, 2020, 2151
SchI	GAGTC	1 cut(s)	2606
ScrFI	CCNGG	7 cut(s)	194, 367, 1239, 1812, 2018, 2073, 2469
SduI	GDGCHC	2 cut(s)	698, 992
SfcI	CTRYAG	3 cut(s)	1019, 1275, 2160
SfoI	GGCGCC	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	5 cut(s)	61, 238, 369, 1444, 2020
SmiMI	CAYNNNNRTG	3 cut(s)	414, 2089, 2656
SmlI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 2002, 2717
SmoI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 2002, 2717
SpeI	ACTAGT	1 cut(s)	1454
SphI	GCATGC	2 cut(s)	2291, 2661
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	8 cut(s)	105, 315, 445, 1346, 2140, 2465, 2707, 2729
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	673, 1763
SspMI	CTAG	5 cut(s)	1140, 1455, 1587, 2052, 2628
SstI	GAGCTC	1 cut(s)	992
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	7 cut(s)	192, 365, 1237, 1810, 2016, 2071, 2467
StyI	CCWWGG	2 cut(s)	1447, 2744
TaaI	ACNGT	7 cut(s)	358, 463, 469, 922, 1567, 1600, 2608
TaiI	ACGT	3 cut(s)	305, 2421, 2656
TaqI	TCGA	8 cut(s)	93, 123, 135, 156, 201, 826, 1495, 1958
TatI	WGTACW	3 cut(s)	1426, 1537, 2304
TauI	GCSGC	3 cut(s)	107, 318, 448
TscAI	CASTG	4 cut(s)	925, 1866, 2115, 2611
TseFI	GTSAC	2 cut(s)	2322, 2471
Tsp45I	GTSAC	2 cut(s)	2322, 2471
TspDTI	ATGAA	7 cut(s)	1407, 1499, 1506, 1524, 1628, 2228, 2233
TspGWI	ACGGA	3 cut(s)	46, 443, 2186
TspRI	CASTG	4 cut(s)	925, 1866, 2115, 2611
Vha464I	CTTAAG	2 cut(s)	662, 1006
VpaK11BI	GGWCC	5 cut(s)	61, 238, 369, 1444, 2020
XapI	RAATTY	4 cut(s)	349, 487, 913, 1396
XbaI	TCTAGA	2 cut(s)	2051, 2627
XceI	RCATGY	4 cut(s)	1586, 2291, 2462, 2661
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	3 cut(s)	655, 971, 1173
XspI	CTAG	5 cut(s)	1140, 1455, 1587, 2052, 2628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.