Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009282

Physical Location & Seq

Genomic Coordinates Forward (+)

56279671 .. 56285791

Gene Structure 6121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26356

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2844 bp

ATGGAGGCGACCACCCCTCCTTCCGATTCTCCATCTATAAAACCCATAAACAAGTCCGTGGTCCACAGAATCTGCGCCGGCCAAGTGATCCTCGACCTCTCGGCCGCCGTCAAAGAATTGGTCGAGAACAGCCTCGACGCCGGCGCCACCACCATCGAGATCGCGCTCAAAGACTACGGCAAAGAGTGGTTCCAGGTCATCGATAACGGCTGCGGCATTTCGCCCAACAACTTCAAGGTCCTTGCCCTCAAGCACCACACTTCCAAACTCGCCGGATTCCCTGACCTCCAGTCTCTGACGACGTTCGGGTTTCGCGGCGAGGCCTTGAGTTCTCTGTGTGCTTTGGGGAATTTAACGGTGGAAACCAGGACCAAATACGAGCAGGTCGCCACGCACTTGACTTTTGACCATTCCGGTGTGTTGGTAACGGAAAAGAAGACGGCGCGGCAGGTCGGCACCACCGTAACGGTCAAGAATCTGTTTGTGAATTTACCGGTGAGGTGCAAGGAGTTCAGTCGCAACATTCGGAAGGAGTATGGGAAGCTGGTTTCTCTATTGAATGCCTATGCTCTTATTGCGAAAGGGGTTCGGTTAGTCTGCACGAATGCCATAGGTAGAAATGCAAAGTCTGTGGTGCTTAAAACGCAAGGAAGTGGTTCACTTAAGGATAATATTGTGACATTGTTTGGGATGAGCACTTTCAGTTGTTTAGAGCCTGTGAGTATATCTGTATCTGATAGTTGCAAGGTTGATGGTTTCCTTTCCAAGTCGGGACAAGGTAGTGGTCGGAACATGGGAGATAGGCAGTTCTTTTTTGTGAATGGTCGACCTGTGGATATGCCTAAAATTACAAAGCTTGTGAATGAGTTGTATAGAGGGGCAAACTCCCAGCAGCATCCTATTGCCATATTGAATTTCACTGTTCCGACAAGAGCGTGTGATGTCAATGTTACTCCTGATAAAAGGAAAGTGTTCTTTTCTGATGAGAGCTCCATACTTGTTGCCTTAAGGGAGGGTCTGCAGCAGATATATTCCACTAGTAATGCTCGTTACTCTGTTAATAAAGTGGAGGAGCCTGCCAAAGAAGCAGGCAGGTCTCAGTTGTGTTCACCTCATCAAAGGTCTCATAAACAATTAGCTAGGGATGATGATGATGATGATGTTCCTGAAGAAGTTCGTCCGGCTGATAAAGCTGAGGAGGCTACAAAAGAAGGAGGCAGGTCTGAATTGTGTTTTCCTGGTCAGAGGTCTCATATGTTTCTGAGACAATCCTCTATAGATTCTGTACCTAAAGAAGTTAGTCCTGAGGATCACACTCCAGAAGGCGATGCTCCTCTGAAAGCTGCGGAAACTGATTCTGAAACTAATCATGATAAGGAAGGGTTTAGCCATGAAAATTCAATGGGGAAGGATTTTGCTTTAAGAGTACACAGCATTAAGGTCCATGGAACTAGTCAATTGACAAAGAATCTCTGTAGTATGAAAGCTGATCGAATTGCAGCAAATGGAGATTCATGTAGTCATTCAAGCTCTGTACAAGCATCAATTAACCAGTTTGTAACTGTAACTAAAAGAAAACATGACAGTATTAGCACAGTCCTGTCTGAAATGCCTGTCCTAAGGAACCAAAGTCTTCATTGTCAATCCAAGAATGATTCACTTAATGCTGTTTCAAAACCCCCACTTAGTCATCAGCAGATCAACGATTCTACTGAAGTTGATAATTCTGCTGAAGCTGGTGAGAATGAGCCATCCAAATATTTTAGAGTAGATAGGATCCTCAACAAAATTAGAGTTCCAGTTTCTCCTAAAGGCAAGATTGAGGGTGAAGGACATGGAGAAGGTTTACAGGCTCAACAGAAAGCAGTGCCTGTTGCTGATATGGCACCAACTGCTTCACCCAGCAGGGATATAAGTCTGTCTGAAGATCTGCCAGCTGCATCACCTTCTTCTTGTATATTGTCAAATACTCCAAAACCTTCTTCTGGTCTTATGATGTGTTCGACCTTGAGATTTAGTCTCCAGGACCTAAAGACAAGGAGGCAGCAAATATATTCTAGATTGCAATCAAGCATACCTGGAGTAAAAGCACAAAGGTGCTATACTGCTGCAACACTGGAGCTTTCTCAACCAGAAAATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTACCACAGAGTTGGAAAGACTTTTCAGAAAAGAAGATTTTGGTAGAATGAAGGTGATTGGGCAATTCAATCTTGGCTTCATTATTGGGAAATTAGATCAAGATTTATTTATCATAGATCAGCATGCAGCTGATGAGAAGTACAATTTTGAGCGCCTGTCACAATCTACCATCTTAAACCAACAGCCGTTGCTTAGGCCATTGAGGTTGGAGTTATCTCCTGAAGAAGAAGTTGTTGCTTCAATGCACATGGACGTAATCAGGAAAAATGGATTTTCTTTGGAAGAGGATCTACATGCTCCGCCTGGTCACCATTTTAAATTGAAAGCTGTTCCCTTCAGTAAAAACATAACTTTTGGAGTTGAAGATGTGAAGGATTTGATATCCACTCTTGCTGATAGTCATGGGGAATGCTCAATCATCGGTAGTTACAAGATGGACACTGTTGACTCCGTTTGCCCTTCTAGAGTTCGCGCGATGCTGGCATCACGTGCATGCAGATCATCTGTTATGATTGGAGATGCCCTCGGAAGAAATGAGATGCGGAAGATTCTCGAGCACCTGGCGGGTCTGAAGTCTCCTTGGAATTGCCCTCATGGCAGGCCAACCATGCGACATTTGATTGATTTGAAATCCATACACAGGTCTGAAGAAAACGATGATGCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

947

Amino Acids

104.16

Weight (kDa)

7.57

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	31 - 87	2.3e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	34 - 136	4.1e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	227 - 344	7.1e-25	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	743 - 899	1.8e-25	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02460 AT4G02460 AT4G02460 AT4G02460
fragaria_vesca	FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510
malus_domestica	MD11G1305800.v1.1
prunus_persica	Prupe.8G259200_v2.0.a1 Prupe.8G259200_v2.0.a1
pyrus_communis	pycom11g26760
rosa_chinensis	RchiOBHm_Chr6g0293721
rosa_laevigata	RLG00000011929
rosa_roxburghii	Rroxscaffold_7G00173950
rosa_rugosa	Rorug06G0237600
rosa_samantha	Rh6AG350400 Rh6BG357900 Rh6CG364700 Rh6DG351600
rosa_wichuraiana	Rw6G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	373, 439, 1083, 1209
AccB1I	GGYRCC	3 cut(s)	143, 455, 1885
AccBSI	CCGCTC	1 cut(s)	2146
AccI	GTMKAC	1 cut(s)	826
AccII	CGCG	5 cut(s)	164, 315, 445, 2643, 2645
AciI	CCGC	9 cut(s)	105, 213, 315, 445, 1346, 2146, 2471, 2713, 2735
AclWI	GGATC	5 cut(s)	82, 1317, 1771, 1784, 2466
AcoI	YGGCCR	2 cut(s)	79, 102
AcsI	RAATTY	4 cut(s)	349, 487, 913, 1396
AcuI	CTGAAG	8 cut(s)	1188, 1734, 1752, 1944, 2412, 2491, 2762, 2838
AcvI	CACGTG	1 cut(s)	2660
AcyI	GRCGYC	2 cut(s)	138, 144
AfaI	GTAC	4 cut(s)	1287, 1428, 1536, 2312
AfiI	CCNNNNNNNGG	2 cut(s)	1985, 2811
AflII	CTTAAG	2 cut(s)	662, 1006
AgeI	ACCGGT	1 cut(s)	493
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	2 cut(s)	1037, 1451
AjnI	CCWGG	7 cut(s)	192, 365, 1237, 2022, 2077, 2473, 2730
AjuI	GAANNNNNNNTTGG	2 cut(s)	1966, 1998
AleI	CACNNNNGTG	1 cut(s)	2095
Alw21I	GWGCWC	3 cut(s)	698, 992, 2730
Alw26I	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 2024, 2751
AlwI	GGATC	5 cut(s)	82, 1317, 1771, 1784, 2466
AlwNI	CAGNNNCTG	3 cut(s)	72, 295, 1871
Ama87I	CYCGRG	1 cut(s)	2723
AoxI	GGCC	6 cut(s)	79, 102, 321, 2157, 2366, 2771
ApoI	RAATTY	4 cut(s)	349, 487, 913, 1396
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	3 cut(s)	655, 971, 1173
AspLEI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
AspS9I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
AsuHPI	GGTGA	8 cut(s)	508, 1101, 1751, 1838, 1890, 1935, 2236, 2471
AvaI	CYCGRG	1 cut(s)	2723
AvaII	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
AxyI	CCTNAGG	2 cut(s)	1305, 1619
BamHI	GGATCC	1 cut(s)	1776
BanI	GGYRCC	3 cut(s)	143, 455, 1885
BanII	GRGCYC	1 cut(s)	992
BarI	GAAGNNNNNNTAC	2 cut(s)	2445, 2477
BbrPI	CACGTG	1 cut(s)	2660
BbsI	GAAGAC	2 cut(s)	443, 1625
Bbv12I	GWGCWC	3 cut(s)	698, 992, 2730
BbvCI	CCTCAGC	1 cut(s)	1194
BccI	CCATC	6 cut(s)	40, 161, 746, 1759, 2348, 2599
BceAI	ACGGC	5 cut(s)	92, 193, 223, 456, 2341
BciT130I	CCWGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
BcoDI	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 2024, 2751
BcuI	ACTAGT	2 cut(s)	1037, 1451
BfaI	CTAG	5 cut(s)	1038, 1140, 1452, 2058, 2634
BfmI	CTRYAG	4 cut(s)	1019, 1275, 1474, 2166
BfoI	RGCGCY	2 cut(s)	147, 2326
BfrI	CTTAAG	2 cut(s)	662, 1006
BfuAI	ACCTGC	4 cut(s)	373, 439, 1083, 1209
BglI	GCCNNNNNGGC	1 cut(s)	2766
BglII	AGATCT	1 cut(s)	1927
Bme1390I	CCNGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
Bme18I	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	2723
BmgT120I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
BmiI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
BmrFI	CCNGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
BmsI	GCATC	9 cut(s)	904, 1318, 1550, 1949, 2637, 2663, 2680, 2700, 2821
BpiI	GAAGAC	2 cut(s)	443, 1625
BplI	GAGNNNNNCTC	2 cut(s)	2679, 2711
BpmI	CTGGAG	5 cut(s)	272, 1302, 2006, 2100, 2138
Bpu10I	CCTNAGC	3 cut(s)	1194, 2161, 2363
BpuEI	CTTGAG	3 cut(s)	233, 346, 2029
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	2660
BsaBI	GATNNNNATC	1 cut(s)	2065
BsaHI	GRCGYC	2 cut(s)	138, 144
BsaI	GGTCTC	3 cut(s)	1101, 1128, 1254
BsaJI	CCNNGG	4 cut(s)	57, 1444, 2695, 2750
BsaWI	WCCGGW	2 cut(s)	413, 493
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	1985, 2811
Bse118I	RCCGGY	3 cut(s)	77, 140, 493
Bse1I	ACTGG	4 cut(s)	289, 1552, 1799, 2121
Bse21I	CCTNAGG	2 cut(s)	1305, 1619
Bse8I	GATNNNNATC	1 cut(s)	2065
BseBI	CCWGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	57, 1444, 2695, 2750
BseGI	GGATG	4 cut(s)	696, 895, 1150, 1751
BseJI	GATNNNNATC	1 cut(s)	2065
BseLI	CCNNNNNNNGG	2 cut(s)	1985, 2811
BseMII	CTCAG	4 cut(s)	1112, 1185, 1253, 1296
BseNI	ACTGG	4 cut(s)	289, 1552, 1799, 2121
BseRI	GAGGAG	4 cut(s)	1085, 1211, 1323, 2156
BseX3I	CGGCCG	1 cut(s)	102
BseYI	CCCAGC	2 cut(s)	888, 1901
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	5 cut(s)	164, 315, 445, 2643, 2645
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
BshNI	GGYRCC	3 cut(s)	143, 455, 1885
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	3 cut(s)	698, 992, 2730
BsiHKCI	CYCGRG	1 cut(s)	2723
BsiSI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	1985, 2811
BsmAI	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 2024, 2751
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	3 cut(s)	565, 610, 2585
BsnI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
Bso31I	GGTCTC	3 cut(s)	1101, 1128, 1254
BsoBI	CYCGRG	1 cut(s)	2723
Bsp1286I	GDGCHC	3 cut(s)	698, 992, 2730
Bsp1407I	TGTACA	1 cut(s)	1534
Bsp19I	CCATGG	1 cut(s)	1444
BspACI	CCGC	9 cut(s)	105, 213, 315, 445, 1346, 2146, 2471, 2713, 2735
BspANI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
BspCNI	CTCAG	4 cut(s)	1111, 1186, 1254, 1297
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	5 cut(s)	164, 315, 445, 2643, 2645
BspHI	TCATGA	1 cut(s)	1369
BspLI	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
BspMAI	CTGCAG	2 cut(s)	1023, 2170
BspMI	ACCTGC	4 cut(s)	373, 439, 1083, 1209
BspPI	GGATC	5 cut(s)	82, 1317, 1771, 1784, 2466
BspT107I	GGYRCC	3 cut(s)	143, 455, 1885
BspTI	CTTAAG	2 cut(s)	662, 1006
BspTNI	GGTCTC	3 cut(s)	1101, 1128, 1254
BsrBI	CCGCTC	1 cut(s)	2146
BsrFI	RCCGGY	3 cut(s)	77, 140, 493
BsrGI	TGTACA	1 cut(s)	1534
BsrI	ACTGG	4 cut(s)	289, 1552, 1799, 2121
BssAI	RCCGGY	3 cut(s)	77, 140, 493
BssECI	CCNNGG	4 cut(s)	57, 1444, 2695, 2750
BssNI	GRCGYC	2 cut(s)	138, 144
BssT1I	CCWWGG	2 cut(s)	1444, 2750
Bst2UI	CCWGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
Bst4CI	ACNGT	8 cut(s)	358, 463, 469, 922, 1564, 1586, 1597, 2614
Bst6I	CTCTTC	1 cut(s)	2448
BstACI	GRCGYC	2 cut(s)	138, 144
BstAFI	CTTAAG	2 cut(s)	662, 1006
BstAPI	GCANNNNNTGC	2 cut(s)	1892, 2660
BstAUI	TGTACA	1 cut(s)	1534
BstBAI	YACGTR	1 cut(s)	2660
BstC8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1935, 2295, 2652, 2665, 2771
BstDEI	CTNAG	8 cut(s)	1098, 1194, 1262, 1305, 1619, 1685, 2161, 2363
BstDSI	CCRYGG	2 cut(s)	57, 1444
BstEII	GGTNACC	1 cut(s)	2477
BstF5I	GGATG	4 cut(s)	696, 895, 1150, 1751
BstFNI	CGCG	5 cut(s)	164, 315, 445, 2643, 2645
BstH2I	RGCGCY	2 cut(s)	147, 2326
BstHHI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
BstMAI	GTCTC	7 cut(s)	297, 1101, 1128, 1254, 1258, 2024, 2751
BstMCI	CGRYCG	1 cut(s)	105
BstNI	CCWGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
BstNSI	RCATGY	3 cut(s)	2297, 2468, 2667
BstPI	GGTNACC	1 cut(s)	2477
BstSCI	CCNGG	7 cut(s)	192, 365, 1237, 2022, 2077, 2473, 2730
BstSFI	CTRYAG	4 cut(s)	1019, 1275, 1474, 2166
BstUI	CGCG	5 cut(s)	164, 315, 445, 2643, 2645
BstV2I	GAAGAC	2 cut(s)	443, 1625
BstX2I	RGATCY	3 cut(s)	1776, 1927, 2458
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	3 cut(s)	1776, 1927, 2458
BstZI	CGGCCG	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	2 cut(s)	1305, 1619
BsuRI	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	57, 1444
BtgZI	GCGATG	2 cut(s)	1341, 2660
BtsCI	GGATG	4 cut(s)	696, 895, 1150, 1751
BtsI	GCAGTG	1 cut(s)	1872
BtsIMutI	CAGTG	4 cut(s)	918, 1872, 2114, 2610
BveI	ACCTGC	4 cut(s)	373, 439, 1083, 1209
Cac8I	GCNNGC	9 cut(s)	79, 142, 1077, 1090, 1935, 2295, 2652, 2665, 2771
CaiI	CAGNNNCTG	3 cut(s)	72, 295, 1871
CciI	TCATGA	1 cut(s)	1369
CfoI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
Cfr10I	RCCGGY	3 cut(s)	77, 140, 493
Cfr13I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	4 cut(s)	1286, 1427, 1535, 2311
CspAI	ACCGGT	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	4 cut(s)	1286, 1427, 1535, 2311
DdeI	CTNAG	8 cut(s)	1098, 1194, 1262, 1305, 1619, 1685, 2161, 2363
DinI	GGCGCC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	2488
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	79, 102
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	2448
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	2448
EciI	GGCGGA	1 cut(s)	2460
Ecl136II	GAGCTC	1 cut(s)	990
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	1444, 2750
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	3 cut(s)	1101, 1128, 1254
Eco32I	GATATC	1 cut(s)	2553
Eco47I	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	8 cut(s)	1188, 1734, 1752, 1944, 2412, 2491, 2762, 2838
Eco72I	CACGTG	1 cut(s)	2660
Eco81I	CCTNAGG	2 cut(s)	1305, 1619
Eco88I	CYCGRG	1 cut(s)	2723
Eco91I	GGTNACC	1 cut(s)	2477
EcoICRI	GAGCTC	1 cut(s)	990
EcoO109I	RGGNCCY	3 cut(s)	238, 2026, 2157
EcoO65I	GGTNACC	1 cut(s)	2477
EcoRII	CCWGG	7 cut(s)	192, 365, 1237, 2022, 2077, 2473, 2730
EcoRV	GATATC	1 cut(s)	2553
EcoT14I	CCWWGG	2 cut(s)	1444, 2750
EcoT38I	GRGCYC	1 cut(s)	992
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	1444, 2750
FaqI	GGGAC	1 cut(s)	786
FauI	CCCGC	1 cut(s)	2728
FauNDI	CATATG	1 cut(s)	1254
FblI	GTMKAC	1 cut(s)	826
FokI	GGATG	4 cut(s)	703, 882, 1157, 1738
FriOI	GRGCYC	1 cut(s)	992
FspBI	CTAG	5 cut(s)	1038, 1140, 1452, 2058, 2634
GlaI	GCGC	6 cut(s)	76, 145, 165, 444, 2324, 2644
GsaI	CCCAGC	2 cut(s)	892, 1905
GsuI	CTGGAG	5 cut(s)	272, 1302, 2006, 2100, 2138
HaeII	RGCGCY	2 cut(s)	147, 2326
HaeIII	GGCC	6 cut(s)	81, 104, 323, 2159, 2368, 2773
HapII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	6 cut(s)	77, 146, 166, 445, 2325, 2645
Hin1I	GRCGYC	2 cut(s)	138, 144
Hin6I	GCGC	6 cut(s)	75, 144, 164, 443, 2323, 2643
HinP1I	GCGC	6 cut(s)	75, 144, 164, 443, 2323, 2643
HincII	GTYRAC	2 cut(s)	827, 2617
HindII	GTYRAC	2 cut(s)	827, 2617
HindIII	AAGCTT	1 cut(s)	854
HpaII	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
HphI	GGTGA	8 cut(s)	508, 1101, 1751, 1838, 1890, 1935, 2236, 2471
Hpy166II	GTNNAC	7 cut(s)	64, 659, 827, 1109, 1429, 1847, 2617
Hpy8I	GTNNAC	7 cut(s)	64, 659, 827, 1109, 1429, 1847, 2617
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyCH4III	ACNGT	8 cut(s)	358, 463, 469, 922, 1564, 1586, 1597, 2614
HpyCH4IV	ACGT	3 cut(s)	302, 2424, 2659
HpyF3I	CTNAG	8 cut(s)	1098, 1194, 1262, 1305, 1619, 1685, 2161, 2363
HpySE526I	ACGT	3 cut(s)	302, 2424, 2659
Hsp92I	GRCGYC	2 cut(s)	138, 144
HspAI	GCGC	6 cut(s)	75, 144, 164, 443, 2323, 2643
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	77, 140
KroNI	GCCGGC	2 cut(s)	79, 142
LmnI	GCTCC	6 cut(s)	995, 1072, 1336, 2119, 2143, 2473
LweI	GCATC	9 cut(s)	904, 1318, 1550, 1949, 2637, 2663, 2680, 2700, 2821
MaeI	CTAG	5 cut(s)	1038, 1140, 1452, 2058, 2634
MaeII	ACGT	3 cut(s)	302, 2424, 2659
MbiI	CCGCTC	1 cut(s)	2146
MfeI	CAATTG	1 cut(s)	1457
MflI	RGATCY	3 cut(s)	1776, 1927, 2458
MhlI	GDGCHC	3 cut(s)	698, 992, 2730
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	2612
MmeI	TCCRAC	4 cut(s)	767, 950, 2163, 2358
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	77, 140
MroXI	GAANNNNTTC	3 cut(s)	655, 971, 1173
MslI	CAYNNNNRTG	3 cut(s)	414, 2095, 2662
MspA1I	CMGCKG	2 cut(s)	1937, 2300
MspCI	CTTAAG	2 cut(s)	662, 1006
MspI	CCGG	6 cut(s)	78, 141, 273, 414, 494, 1181
MspR9I	CCNGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
MunI	CAATTG	1 cut(s)	1457
Mva1269I	GAATGC	3 cut(s)	565, 610, 2585
MvaI	CCWGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
MvnI	CGCG	5 cut(s)	164, 315, 445, 2643, 2645
NaeI	GCCGGC	2 cut(s)	79, 142
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1444
NdeI	CATATG	1 cut(s)	1254
NgoMIV	GCCGGC	2 cut(s)	77, 140
NlaIV	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	3 cut(s)	676, 2328, 2477
NspI	RCATGY	3 cut(s)	2297, 2468, 2667
OliI	CACNNNNGTG	1 cut(s)	2095
PaeI	GCATGC	2 cut(s)	2297, 2667
PaeR7I	CTCGAG	1 cut(s)	2723
PagI	TCATGA	1 cut(s)	1369
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	3 cut(s)	565, 610, 2585
PdiI	GCCGGC	2 cut(s)	79, 142
PdmI	GAANNNNTTC	3 cut(s)	655, 971, 1173
PfoI	TCCNGGA	1 cut(s)	2022
PinAI	ACCGGT	1 cut(s)	493
PleI	GAGTC	1 cut(s)	2612
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	2660
PmlI	CACGTG	1 cut(s)	2660
PpsI	GAGTC	1 cut(s)	2612
Ppu21I	YACGTR	1 cut(s)	2660
PpuMI	RGGWCCY	2 cut(s)	238, 2026
Psp124BI	GAGCTC	1 cut(s)	992
Psp5II	RGGWCCY	2 cut(s)	238, 2026
Psp6I	CCWGG	7 cut(s)	192, 365, 1237, 2022, 2077, 2473, 2730
PspCI	CACGTG	1 cut(s)	2660
PspEI	GGTNACC	1 cut(s)	2477
PspFI	CCCAGC	2 cut(s)	888, 1901
PspGI	CCWGG	7 cut(s)	192, 365, 1237, 2022, 2077, 2473, 2730
PspN4I	GGNNCC	7 cut(s)	145, 191, 457, 1074, 1625, 1778, 1887
PspPI	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
PspPPI	RGGWCCY	2 cut(s)	238, 2026
PstI	CTGCAG	2 cut(s)	1023, 2170
PstNI	CAGNNNCTG	3 cut(s)	72, 295, 1871
PsuI	RGATCY	3 cut(s)	1776, 1927, 2458
PvuII	CAGCTG	2 cut(s)	1937, 2300
RsaI	GTAC	4 cut(s)	1287, 1428, 1536, 2312
RsaNI	GTAC	4 cut(s)	1286, 1427, 1535, 2311
RseI	CAYNNNNRTG	3 cut(s)	414, 2095, 2662
SacI	GAGCTC	1 cut(s)	992
SalI	GTCGAC	1 cut(s)	825
Sau96I	GGNCC	6 cut(s)	61, 238, 369, 1441, 2026, 2157
SchI	GAGTC	1 cut(s)	2612
ScrFI	CCNGG	7 cut(s)	194, 367, 1239, 2024, 2079, 2475, 2732
SduI	GDGCHC	3 cut(s)	698, 992, 2730
SfaNI	GCATC	9 cut(s)	904, 1318, 1550, 1949, 2637, 2663, 2680, 2700, 2821
SfcI	CTRYAG	4 cut(s)	1019, 1275, 1474, 2166
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	2723
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
SlaI	CTCGAG	1 cut(s)	2723
SmiMI	CAYNNNNRTG	3 cut(s)	414, 2095, 2662
SmlI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 2008, 2723
SmoI	CTYRAG	6 cut(s)	248, 325, 662, 1006, 2008, 2723
SpeI	ACTAGT	2 cut(s)	1037, 1451
SphI	GCATGC	2 cut(s)	2297, 2667
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	9 cut(s)	105, 213, 315, 445, 1346, 2146, 2471, 2713, 2735
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	673, 1760
SspMI	CTAG	5 cut(s)	1038, 1140, 1452, 2058, 2634
SstI	GAGCTC	1 cut(s)	992
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	7 cut(s)	192, 365, 1237, 2022, 2077, 2473, 2730
StyI	CCWWGG	2 cut(s)	1444, 2750
TaaI	ACNGT	8 cut(s)	358, 463, 469, 922, 1564, 1586, 1597, 2614
TaiI	ACGT	3 cut(s)	305, 2427, 2662
TaqI	TCGA	9 cut(s)	93, 123, 135, 156, 201, 826, 1492, 2003, 2724
TatI	WGTACW	3 cut(s)	1426, 1534, 2310
TauI	GCSGC	4 cut(s)	107, 216, 318, 448
TscAI	CASTG	4 cut(s)	925, 1872, 2121, 2617
TseFI	GTSAC	3 cut(s)	676, 2328, 2477
Tsp45I	GTSAC	3 cut(s)	676, 2328, 2477
TspDTI	ATGAA	6 cut(s)	1407, 1496, 1503, 1625, 2234, 2239
TspGWI	ACGGA	3 cut(s)	46, 443, 2611
TspRI	CASTG	4 cut(s)	925, 1872, 2121, 2617
Vha464I	CTTAAG	2 cut(s)	662, 1006
VpaK11BI	GGWCC	5 cut(s)	61, 238, 369, 1441, 2026
XapI	RAATTY	4 cut(s)	349, 487, 913, 1396
XbaI	TCTAGA	2 cut(s)	2057, 2633
XceI	RCATGY	3 cut(s)	2297, 2468, 2667
XhoI	CTCGAG	1 cut(s)	2723
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	3 cut(s)	655, 971, 1173
XspI	CTAG	5 cut(s)	1038, 1140, 1452, 2058, 2634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.