Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016267

Physical Location & Seq

Genomic Coordinates Reverse (-)

21721338 .. 21722741

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGTGGCGACAATCGGAGCGGCGTCGCTCGCTCCGGTCTTCCAAGAGCTCTGCGATCAAGTCACTCAAGCGATGCAGAAGAACACCAAGCTCAAAGCCATCCTGGGCTTTCTCCACTCCACGCTCAATTCGTTCAAAAATCGAGTCATCCAGCCGGTCCAAGAAGGCCGCCGGATTATGTACAACCAAGACTACCAGATCGAGTCCGCCGTCGTCGAATTGCAGAAGGGGGCGAAGCTAGTGGCGAAGGTCTCCAGGCTCCGATCTTGTAGCTATTTCTGGCTGGACAGTTACGCGAAGAAGCTTCTGGATTTGGATAGGCACTTGAGGAGTCTGATGGAGGCGACTTGGGGGGAGGAGGTTAGGGTTGTGAGGCAGCAGAGCAGGGAAGTGAGGGAACTGATGGATGGGATGGTTGGGAGGATGTTTGATGCTTATAAGAAGGTGATGGAGGCCGAGACGGTGCCGGTGAGGACAGAGACGGCGGCGGAGGAGGAGAGGGGAAATGATGAGGAGGAAGAGGCGGCGTTGGTTGTGTTTCAGAGGCTGTTTGAGGCTGTGAGGGAGGCGCGGGAGAAGAGGGAGGCGCCGTGGATGATTGTGGCACTGGTTTTGGATATTGAGATGACATTGTACTCGGTGCAGCCGTTTTTGGAGGAGATGGCGGCGCATAACAGGGTGTTGGGACGGCCTAAGGAGGAGGTGAGGAGTTTACGAGTGGAGATGGAGAAGGGGTTGGAGGTGGTGAGGAGGAGTGGCCAGGTTGGTAAGAAGTGGGAGGGATTCAGCAAGAAGAAGTATGAGTGTATTGTCGGGCTGTCGGGGCTGAATCAGTGTCTGCAGAGAGAGGTGTGTATTCTGAGATGGCAGATGGCCAAGAATGCGACCGAGTCTTTGGATTGGGTGAGGAAAATGGAGAGGGCGGTGAGTGAGATCGTAAGCAATGTGGGAGTGCTGGAGCAAGCTGGAGTTTCTGGGACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

37.57

Weight (kDa)

7.6

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 138	1.4e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	179 - 285	8e-08	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27320
rosa_chinensis	RchiOBHm_Chr6g0296131 RchiOBHm_Chr6g0296141
rosa_laevigata	RLG00000011724
rosa_multiflora	Rmu_co8158884.1_g000001 Rmu_sc0000486.1_g000005 Rmu_sc0003139.1_g000049
rosa_roxburghii	Rroxscaffold_7G00171800 Rroxscaffold_7G00178250
rosa_rugosa	Rorug06G0258700
rosa_samantha	Rh6AG371000 Rh6BG378900 Rh6CG384200 Rh6DG371400
rosa_wichuraiana	Rw6G032320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccB1I	GGYRCC	2 cut(s)	466, 589
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	2 cut(s)	299, 574
AcoI	YGGCCR	2 cut(s)	760, 876
AcyI	GRCGYC	2 cut(s)	26, 590
AfaI	GTAC	2 cut(s)	185, 638
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	3 cut(s)	105, 257, 762
AluBI	AGCT	7 cut(s)	52, 94, 241, 276, 307, 968, 986
AluI	AGCT	7 cut(s)	52, 94, 241, 276, 307, 968, 986
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	3 cut(s)	259, 455, 476
AlwNI	CAGNNNCTG	2 cut(s)	550, 841
AoxI	GGCC	5 cut(s)	169, 456, 692, 760, 876
ApeKI	GCWGC	2 cut(s)	379, 646
ArsI	GACNNNNNNTTYG	4 cut(s)	132, 164, 880, 912
AspLEI	GCGC	3 cut(s)	574, 592, 673
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	6 cut(s)	460, 484, 718, 760, 919, 940
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	696
BalI	TGGCCA	2 cut(s)	762, 878
BanI	GGYRCC	2 cut(s)	466, 589
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	391, 658
BceAI	ACGGC	5 cut(s)	197, 501, 577, 634, 707
BciT130I	CCWGG	3 cut(s)	107, 259, 764
BcoDI	GTCTC	3 cut(s)	259, 455, 476
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	593
BisI	GCNGC	7 cut(s)	24, 172, 380, 489, 528, 647, 669
BlsI	GCNGC	7 cut(s)	25, 173, 381, 490, 529, 648, 670
Bme1390I	CCNGG	3 cut(s)	107, 259, 764
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	263, 468, 591
BmrFI	CCNGG	3 cut(s)	107, 259, 764
BmsI	GCATC	2 cut(s)	66, 424
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	3 cut(s)	241, 980, 990
BpuEI	CTTGAG	2 cut(s)	54, 349
BsaHI	GRCGYC	2 cut(s)	26, 590
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	106, 593
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	4 cut(s)	578, 608, 722, 752
Bse118I	RCCGGY	2 cut(s)	157, 469
Bse1I	ACTGG	1 cut(s)	615
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	1 cut(s)	952
BseBI	CCWGG	3 cut(s)	107, 259, 764
BseDI	CCNNGG	2 cut(s)	106, 593
BseGI	GGATG	6 cut(s)	102, 150, 415, 420, 432, 603
BseMI	GCAATG	1 cut(s)	952
BseMII	CTCAG	1 cut(s)	854
BseNI	ACTGG	1 cut(s)	615
BseXI	GCAGC	2 cut(s)	391, 658
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	299, 574
Bsh1285I	CGRYCG	1 cut(s)	891
BshFI	GGCC	5 cut(s)	171, 458, 694, 762, 878
BshNI	GGYRCC	2 cut(s)	466, 589
BsiEI	CGRYCG	1 cut(s)	891
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	4 cut(s)	38, 158, 175, 470
BslFI	GGGAC	1 cut(s)	702
BsmAI	GTCTC	3 cut(s)	259, 455, 476
BsmBI	CGTCTC	2 cut(s)	455, 476
BsmFI	GGGAC	1 cut(s)	702
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	5 cut(s)	171, 458, 694, 762, 878
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	58, 201, 266, 936
BspANI	GGCC	5 cut(s)	171, 458, 694, 762, 878
BspCNI	CTCAG	1 cut(s)	855
BspFNI	CGCG	2 cut(s)	299, 574
BspLI	GGNNCC	3 cut(s)	263, 468, 591
BspMAI	CTGCAG	1 cut(s)	846
BspT107I	GGYRCC	2 cut(s)	466, 589
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	952
BsrFI	RCCGGY	2 cut(s)	157, 469
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	2 cut(s)	157, 469
BssECI	CCNNGG	2 cut(s)	106, 593
BssMI	GATC	4 cut(s)	58, 201, 266, 936
BssNI	GRCGYC	2 cut(s)	26, 590
Bst2UI	CCWGG	3 cut(s)	107, 259, 764
Bst4CI	ACNGT	2 cut(s)	293, 466
Bst6I	CTCTTC	2 cut(s)	516, 575
BstACI	GRCGYC	2 cut(s)	26, 590
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	33, 966
BstDEI	CTNAG	2 cut(s)	696, 863
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	6 cut(s)	102, 150, 415, 420, 432, 603
BstFNI	CGCG	2 cut(s)	299, 574
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	3 cut(s)	574, 592, 673
BstKTI	GATC	4 cut(s)	61, 204, 269, 939
BstMAI	GTCTC	3 cut(s)	259, 455, 476
BstMBI	GATC	4 cut(s)	58, 201, 266, 936
BstMCI	CGRYCG	1 cut(s)	891
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 826, 884
BstNI	CCWGG	3 cut(s)	107, 259, 764
BstSCI	CCNGG	3 cut(s)	105, 257, 762
BstSFI	CTRYAG	1 cut(s)	842
BstUI	CGCG	2 cut(s)	299, 574
BstV1I	GCAGC	2 cut(s)	391, 658
BstV2I	GAAGAC	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	171, 458, 694, 762, 878
BtgI	CCRYGG	1 cut(s)	593
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	6 cut(s)	102, 150, 415, 420, 432, 603
BtsIMutI	CAGTG	2 cut(s)	608, 842
Cac8I	GCNNGC	2 cut(s)	33, 966
CaiI	CAGNNNCTG	2 cut(s)	550, 841
CfoI	GCGC	3 cut(s)	574, 592, 673
Cfr10I	RCCGGY	2 cut(s)	157, 469
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	184, 637
CviQI	GTAC	2 cut(s)	184, 637
DdeI	CTNAG	2 cut(s)	696, 863
DinI	GGCGCC	1 cut(s)	591
DpnI	GATC	4 cut(s)	60, 203, 268, 938
DpnII	GATC	4 cut(s)	58, 201, 266, 936
EaeI	YGGCCR	2 cut(s)	760, 876
Eam1104I	CTCTTC	2 cut(s)	516, 575
EarI	CTCTTC	2 cut(s)	516, 575
EciI	GGCGGA	2 cut(s)	199, 506
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	105, 257, 762
EcoT38I	GRGCYC	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	591
EheI	GGCGCC	1 cut(s)	591
Esp3I	CGTCTC	2 cut(s)	455, 476
FaiI	YATR	4 cut(s)	182, 441, 675, 804
FaqI	GGGAC	1 cut(s)	702
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	7 cut(s)	24, 172, 380, 489, 528, 647, 669
FokI	GGATG	6 cut(s)	89, 137, 422, 427, 439, 610
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	7 cut(s)	24, 172, 380, 489, 528, 647, 669
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	3 cut(s)	573, 591, 672
GluI	GCNGC	7 cut(s)	24, 172, 380, 489, 528, 647, 669
GsuI	CTGGAG	3 cut(s)	241, 980, 990
HaeII	RGCGCY	1 cut(s)	593
HaeIII	GGCC	5 cut(s)	171, 458, 694, 762, 878
HapII	CCGG	4 cut(s)	38, 158, 175, 470
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	3 cut(s)	574, 592, 673
Hin1I	GRCGYC	2 cut(s)	26, 590
Hin6I	GCGC	3 cut(s)	572, 590, 671
HinP1I	GCGC	3 cut(s)	572, 590, 671
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	6 cut(s)	147, 206, 334, 786, 832, 893
HpaII	CCGG	4 cut(s)	38, 158, 175, 470
HphI	GGTGA	6 cut(s)	460, 484, 718, 760, 919, 940
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	5 cut(s)	20, 266, 339, 546, 864
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	716
Hpy99I	CGWCG	3 cut(s)	31, 218, 221
HpyAV	CCTTC	5 cut(s)	161, 223, 244, 439, 727
HpyCH4III	ACNGT	2 cut(s)	293, 466
HpyCH4V	TGCA	4 cut(s)	79, 226, 646, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 826, 884
HpyF3I	CTNAG	2 cut(s)	696, 863
Hsp92I	GRCGYC	2 cut(s)	26, 590
HspAI	GCGC	3 cut(s)	572, 590, 671
KasI	GGCGCC	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	58, 201, 266, 936
LmnI	GCTCC	4 cut(s)	20, 40, 267, 961
Lsp1109I	GCAGC	2 cut(s)	391, 658
LweI	GCATC	2 cut(s)	66, 424
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	64, 293
MalI	GATC	4 cut(s)	60, 203, 268, 938
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	4 cut(s)	58, 201, 266, 936
MboII	GAAGA	6 cut(s)	34, 94, 313, 533, 592, 808
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	2 cut(s)	762, 878
MluCI	AATT	2 cut(s)	130, 221
MluNI	TGGCCA	2 cut(s)	762, 878
Mly113I	GGCGCC	1 cut(s)	590
MlyI	GAGTC	4 cut(s)	156, 215, 343, 902
MmeI	TCCRAC	1 cut(s)	720
Mox20I	TGGCCA	2 cut(s)	762, 878
MscI	TGGCCA	2 cut(s)	762, 878
Msp20I	TGGCCA	2 cut(s)	762, 878
MspI	CCGG	4 cut(s)	38, 158, 175, 470
MspR9I	CCNGG	3 cut(s)	107, 259, 764
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	3 cut(s)	107, 259, 764
MvnI	CGCG	2 cut(s)	299, 574
MwoI	GCNNNNNNNGC	3 cut(s)	32, 826, 884
NarI	GGCGCC	1 cut(s)	590
NdeII	GATC	4 cut(s)	58, 201, 266, 936
NlaIV	GGNNCC	3 cut(s)	263, 468, 591
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	3 cut(s)	131, 210, 647
PctI	GAATGC	1 cut(s)	889
PfeI	GAWTC	2 cut(s)	786, 832
PflFI	GACNNNGTC	1 cut(s)	892
PkrI	GCNGC	7 cut(s)	25, 173, 381, 490, 529, 648, 670
PleI	GAGTC	4 cut(s)	155, 214, 342, 901
PluTI	GGCGCC	1 cut(s)	593
PpsI	GAGTC	4 cut(s)	155, 214, 342, 901
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	105, 257, 762
PspGI	CCWGG	3 cut(s)	105, 257, 762
PspN4I	GGNNCC	3 cut(s)	263, 468, 591
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	846
PstNI	CAGNNNCTG	2 cut(s)	550, 841
PsyI	GACNNNGTC	1 cut(s)	892
RsaI	GTAC	2 cut(s)	185, 638
RsaNI	GTAC	2 cut(s)	184, 637
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	7 cut(s)	24, 172, 380, 489, 528, 647, 669
Sau3AI	GATC	4 cut(s)	58, 201, 266, 936
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	4 cut(s)	156, 215, 343, 902
ScrFI	CCNGG	3 cut(s)	107, 259, 764
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	66, 424
SfcI	CTRYAG	1 cut(s)	842
SfoI	GGCGCC	1 cut(s)	591
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	69, 328
SmoI	CTYRAG	2 cut(s)	69, 328
Sse9I	AATT	2 cut(s)	130, 221
SspDI	GGCGCC	1 cut(s)	589
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	105, 257, 762
TaaI	ACNGT	2 cut(s)	293, 466
TaqI	TCGA	3 cut(s)	145, 204, 219
TaqII	GACCGA	1 cut(s)	905
TasI	AATT	2 cut(s)	130, 221
TatI	WGTACW	2 cut(s)	183, 636
TauI	GCSGC	5 cut(s)	26, 174, 491, 530, 671
TfiI	GAWTC	2 cut(s)	786, 832
TscAI	CASTG	2 cut(s)	615, 842
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	379, 646
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	2 cut(s)	615, 842
Tth111I	GACNNNGTC	1 cut(s)	892
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.