Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016267

Physical Location & Seq

Genomic Coordinates Reverse (-)

56937925 .. 56938923

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGGTGGCGACAATCGGAGCGGCGTCCCTCGCTCCGATCTTCCAAGAGCTCTGCGATCAAGTCACCCAATCCATGGAGAAGAACACAAAGCTCAAAACCGTCCTGGGATTTTTCCAGTCCACGCTCAATTCCTTCAGAGACCGAATCATCCAGCCCGTTCAACAAGGCCAGCAGATTTTCCACGATCAAGACGACAAGATCGAGTCCGTCGTCGTCGAATTGCAGAAGGGAGCGAAGCTAATCGCGAAGGTCTCCAAGCTCCGGTCTTGGAGCTATTTCTGGCTGGACGAGTACACGGAGAAGCTTCTGGAATTGGATAGGTACTTCAGGCGTCTGCTGGAGACGACTTGGGTTCGGGAGTTTAGGGTTGTGAGGCAGCAGAATAGGGATGTTAACCACCTGATGGATGGGATGCTTCGGAGAATGTTTGATGCTTATAAGAAGGCCGTGGAGGCCGAAACGGCGGTGAGAGAGGCGGAGGAGAAGAACGAGGCGCCCAGGATGTTTAGGTACCTGGTTTCGGATATAGAGAGCACATTGTACTCGTTGCAGCCGTTTTTGGAGGAGATGGCCGCCCACAACAAGATGGCCAAGAATGCGATCCAGGCATTGGATTTGGTGAGGAAAATGGAGAGGGCGGTGAATGAGATCGAAAGCAATGTGGGAGTGCTGGAGCAAGCTGGAGTTGCTAGCACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

27.07

Weight (kDa)

6.03

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 136	1.8e-12	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27320
rosa_chinensis	RchiOBHm_Chr6g0296131 RchiOBHm_Chr6g0296141
rosa_laevigata	RLG00000011724
rosa_multiflora	Rmu_co8158884.1_g000001 Rmu_sc0000486.1_g000005 Rmu_sc0003139.1_g000049
rosa_roxburghii	Rroxscaffold_7G00171800 Rroxscaffold_7G00178250
rosa_rugosa	Rorug06G0258700
rosa_samantha	Rh6AG371000 Rh6BG378900 Rh6CG384200 Rh6DG371400
rosa_wichuraiana	Rw6G032320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
Acc65I	GGTACC	1 cut(s)	513
AccB1I	GGYRCC	2 cut(s)	496, 513
AccB7I	CCANNNNNTGG	3 cut(s)	76, 406, 613
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	248
AciI	CCGC	6 cut(s)	5, 23, 467, 479, 576, 641
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	2 cut(s)	573, 591
AcuI	CTGAAG	2 cut(s)	121, 313
AcyI	GRCGYC	3 cut(s)	26, 334, 497
AfaI	GTAC	4 cut(s)	296, 326, 515, 545
AfiI	CCNNNNNNNGG	5 cut(s)	76, 264, 406, 523, 613
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	4 cut(s)	105, 500, 516, 606
AluBI	AGCT	7 cut(s)	52, 94, 241, 262, 276, 307, 683
AluI	AGCT	7 cut(s)	52, 94, 241, 262, 276, 307, 683
Alw21I	GWGCWC	2 cut(s)	54, 539
Alw26I	GTCTC	3 cut(s)	135, 259, 338
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	5 cut(s)	169, 447, 456, 573, 591
ApeKI	GCWGC	2 cut(s)	379, 553
Asp718I	GGTACC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	499
AsuHPI	GGTGA	4 cut(s)	58, 481, 634, 655
AsuNHI	GCTAGC	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	593
BanI	GGYRCC	2 cut(s)	496, 513
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	54, 539
BbvI	GCAGC	2 cut(s)	391, 565
BccI	CCATC	4 cut(s)	400, 404, 565, 583
BceAI	ACGGC	3 cut(s)	434, 480, 541
BciT130I	CCWGG	4 cut(s)	107, 502, 518, 608
BcoDI	GTCTC	3 cut(s)	135, 259, 338
BfaI	CTAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	500
BglI	GCCNNNNNGGC	2 cut(s)	455, 464
BisI	GCNGC	4 cut(s)	24, 380, 554, 576
BlsI	GCNGC	4 cut(s)	25, 381, 555, 577
Bme1390I	CCNGG	4 cut(s)	107, 502, 518, 608
BmiI	GGNNCC	2 cut(s)	498, 515
BmrFI	CCNGG	4 cut(s)	107, 502, 518, 608
BmsI	GCATC	2 cut(s)	405, 424
BmtI	GCTAGC	1 cut(s)	696
BpmI	CTGGAG	3 cut(s)	362, 695, 705
BsaHI	GRCGYC	3 cut(s)	26, 334, 497
BsaI	GGTCTC	2 cut(s)	135, 259
BsaJI	CCNNGG	4 cut(s)	75, 106, 450, 500
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 264, 406, 523, 613
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	667
BseBI	CCWGG	4 cut(s)	107, 502, 518, 608
BseDI	CCNNGG	4 cut(s)	75, 106, 450, 500
BseGI	GGATG	5 cut(s)	150, 397, 415, 420, 510
BseLI	CCNNNNNNNGG	5 cut(s)	76, 264, 406, 523, 613
BseMI	GCAATG	1 cut(s)	667
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	497, 581
BseXI	GCAGC	2 cut(s)	391, 565
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	5 cut(s)	171, 449, 458, 575, 593
BshNI	GGYRCC	2 cut(s)	496, 513
BsiHKAI	GWGCWC	2 cut(s)	54, 539
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	5 cut(s)	76, 264, 406, 523, 613
BsmAI	GTCTC	3 cut(s)	135, 259, 338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	5 cut(s)	171, 449, 458, 575, 593
Bso31I	GGTCTC	2 cut(s)	135, 259
Bsp1286I	GDGCHC	2 cut(s)	54, 539
Bsp143I	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
Bsp19I	CCATGG	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	6 cut(s)	5, 23, 467, 479, 576, 641
BspANI	GGCC	5 cut(s)	171, 449, 458, 575, 593
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	498, 515
BspOI	GCTAGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	598
BspT107I	GGYRCC	2 cut(s)	496, 513
BspTNI	GGTCTC	2 cut(s)	135, 259
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	75, 106, 450, 500
BssMI	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
BssNI	GRCGYC	3 cut(s)	26, 334, 497
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	4 cut(s)	107, 502, 518, 608
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	3 cut(s)	26, 334, 497
BstC8I	GCNNGC	3 cut(s)	173, 681, 694
BstDSI	CCRYGG	2 cut(s)	75, 450
BstF5I	GGATG	5 cut(s)	150, 397, 415, 420, 510
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	6 cut(s)	42, 61, 190, 204, 606, 654
BstMAI	GTCTC	3 cut(s)	135, 259, 338
BstMBI	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 455, 464, 599, 608, 689
BstNI	CCWGG	4 cut(s)	107, 502, 518, 608
BstSCI	CCNGG	4 cut(s)	105, 500, 516, 606
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	391, 565
BsuRI	GGCC	5 cut(s)	171, 449, 458, 575, 593
BtgI	CCRYGG	2 cut(s)	75, 450
BtsCI	GGATG	5 cut(s)	150, 397, 415, 420, 510
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	173, 681, 694
CfoI	GCGC	1 cut(s)	499
CseI	GACGC	2 cut(s)	15, 323
CsiI	ACCWGGT	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	295, 325, 514, 544
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	4 cut(s)	295, 325, 514, 544
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	6 cut(s)	41, 60, 189, 203, 605, 653
DpnII	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
EaeI	YGGCCR	2 cut(s)	573, 591
EciI	GGCGGA	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	135, 259
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	121, 313
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	4 cut(s)	105, 500, 516, 606
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 441, 530
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	24, 380, 554, 576
FokI	GGATG	5 cut(s)	137, 404, 422, 427, 517
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	4 cut(s)	24, 380, 554, 576
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	4 cut(s)	24, 380, 554, 576
GsuI	CTGGAG	3 cut(s)	362, 695, 705
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	5 cut(s)	171, 449, 458, 575, 593
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	2 cut(s)	15, 323
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	3 cut(s)	26, 334, 497
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	147, 206
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	4 cut(s)	58, 481, 634, 655
Hpy166II	GTNNAC	3 cut(s)	123, 297, 397
Hpy188I	TCNGA	5 cut(s)	20, 39, 140, 423, 526
Hpy188III	TCNNGA	4 cut(s)	191, 247, 311, 359
Hpy8I	GTNNAC	3 cut(s)	123, 297, 397
Hpy99I	CGWCG	3 cut(s)	215, 218, 221
HpyAV	CCTTC	4 cut(s)	145, 223, 244, 439
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	226, 553
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 455, 464, 599, 608, 689
Hsp92I	GRCGYC	3 cut(s)	26, 334, 497
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	497
KasI	GGCGCC	1 cut(s)	496
KpnI	GGTACC	1 cut(s)	517
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
LmnI	GCTCC	6 cut(s)	20, 40, 233, 267, 273, 676
Lsp1109I	GCAGC	2 cut(s)	391, 565
LweI	GCATC	2 cut(s)	405, 424
MabI	ACCWGGT	1 cut(s)	516
MaeI	CTAG	1 cut(s)	693
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	6 cut(s)	41, 60, 189, 203, 605, 653
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
MboII	GAAGA	3 cut(s)	34, 94, 499
MhlI	GDGCHC	2 cut(s)	54, 539
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	3 cut(s)	130, 221, 314
MluNI	TGGCCA	1 cut(s)	593
Mly113I	GGCGCC	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	9 cut(s)	41, 369, 448, 469, 475, 487, 559, 618, 630
Mox20I	TGGCCA	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	593
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	4 cut(s)	107, 502, 518, 608
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	4 cut(s)	107, 502, 518, 608
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	6 cut(s)	32, 455, 464, 599, 608, 689
NarI	GGCGCC	1 cut(s)	497
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
NheI	GCTAGC	1 cut(s)	692
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	498, 515
NmuCI	GTSAC	1 cut(s)	64
NruI	TCGCGA	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	4 cut(s)	192, 201, 210, 554
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	147
PflMI	CCANNNNNTGG	3 cut(s)	76, 406, 613
PkrI	GCNGC	4 cut(s)	25, 381, 555, 577
PleI	GAGTC	1 cut(s)	214
PluTI	GGCGCC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	4 cut(s)	105, 500, 516, 606
PspGI	CCWGG	4 cut(s)	105, 500, 516, 606
PspN4I	GGNNCC	2 cut(s)	498, 515
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	4 cut(s)	296, 326, 515, 545
RsaNI	GTAC	4 cut(s)	295, 325, 514, 544
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	24, 380, 554, 576
Sau3AI	GATC	6 cut(s)	39, 58, 187, 201, 603, 651
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	4 cut(s)	107, 502, 518, 608
SduI	GDGCHC	2 cut(s)	54, 539
SexAI	ACCWGGT	1 cut(s)	516
SfaNI	GCATC	2 cut(s)	405, 424
SfiI	GGCCNNNNNGGCC	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	498
Sse9I	AATT	3 cut(s)	130, 221, 314
SsiI	CCGC	6 cut(s)	5, 23, 467, 479, 576, 641
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	693
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	105, 500, 516, 606
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	204, 219, 654
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	130, 221, 314
TatI	WGTACW	2 cut(s)	294, 543
TauI	GCSGC	2 cut(s)	26, 578
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	379, 553
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	199, 314
Van91I	CCANNNNNTGG	3 cut(s)	76, 406, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.