Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016267

Physical Location & Seq

Genomic Coordinates Reverse (-)

57916238 .. 57916951

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTTAGGTACCTGGTTTCGGATATAGAGAGCACATTGTACTCGTTGCAGCCGTTTTTGGAGGAGATGGCGGCACACAACAAGGTGTTGGACCGGCCCAAGGAGGAGGTGAGGAGTTTCAGAGTGGAGATGGAGAAGGGGGTGGAGGTGGTTCGGAGGAGCGGTGGGGTTGGTAAGAAGTGGGAGGGATACAGCAAGAAGAAATATGAGTGTATTGATGGGCTGTTGGGGCTGAATCAGTGTCTGCAGAGACAGGTGTGTATTCTGAGATGGCAGATGGCCAAGAATGCGATCCAGGCATTGGATTTGGTGAGGAAAATGGAGAGGGCGGTGAATGAGATCGAAAGCAATGTGGGAGTGCTGGAGCAAGCTGGAGTTGCTAGCACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.85

Weight (kDa)

8.45

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	1 - 98	4.5e-10	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27320
rosa_chinensis	RchiOBHm_Chr6g0296131 RchiOBHm_Chr6g0296141
rosa_laevigata	RLG00000011724
rosa_multiflora	Rmu_co8158884.1_g000001 Rmu_sc0000486.1_g000005 Rmu_sc0003139.1_g000049
rosa_roxburghii	Rroxscaffold_7G00171800 Rroxscaffold_7G00178250
rosa_rugosa	Rorug06G0258700
rosa_samantha	Rh6AG371000 Rh6BG378900 Rh6CG384200 Rh6DG371400
rosa_wichuraiana	Rw6G032320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	3 cut(s)	71, 162, 329
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	279
AfaI	GTAC	2 cut(s)	11, 41
AfiI	CCNNNNNNNGG	3 cut(s)	19, 100, 301
AjnI	CCWGG	2 cut(s)	12, 294
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	95, 279
ApeKI	GCWGC	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	91, 96
AsuHPI	GGTGA	3 cut(s)	121, 322, 343
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	5 cut(s)	61, 124, 212, 264, 271
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	14, 296
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	2 cut(s)	50, 72
BlsI	GCNGC	2 cut(s)	51, 73
Bme1390I	CCNGG	2 cut(s)	14, 296
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 96
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	14, 296
BmtI	GCTAGC	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	383, 393
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 100, 301
Bse118I	RCCGGY	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	14, 296
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	19, 100, 301
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	4 cut(s)	77, 119, 127, 172
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	97, 281
BshNI	GGYRCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	19, 100, 301
BsmAI	GTCTC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	97, 281
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	291, 339
BspACI	CCGC	3 cut(s)	71, 162, 329
BspANI	GGCC	2 cut(s)	97, 281
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	249
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	291, 339
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	14, 296
BstC8I	GCNNGC	2 cut(s)	369, 382
BstDEI	CTNAG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	294, 342
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	2 cut(s)	291, 339
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 287, 296, 377
BstNI	CCWGG	2 cut(s)	14, 296
BstSCI	CCNGG	2 cut(s)	12, 294
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	97, 281
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	369, 382
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	91, 96
CsiI	ACCWGGT	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	10, 40
CviJI	RGCY	6 cut(s)	52, 97, 223, 232, 281, 371
CviKI_1	RGCY	6 cut(s)	52, 97, 223, 232, 281, 371
CviQI	GTAC	2 cut(s)	10, 40
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	2 cut(s)	293, 341
DpnII	GATC	2 cut(s)	291, 339
EaeI	YGGCCR	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	12, 294
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	2 cut(s)	26, 207
Fnu4HI	GCNGC	2 cut(s)	50, 72
Fsp4HI	GCNGC	2 cut(s)	50, 72
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	2 cut(s)	50, 72
GsuI	CTGGAG	2 cut(s)	383, 393
HaeIII	GGCC	2 cut(s)	97, 281
HapII	CCGG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	3 cut(s)	121, 322, 343
Hpy188I	TCNGA	4 cut(s)	22, 122, 156, 267
HpyAV	CCTTC	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	49, 247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 287, 296, 377
HpyF3I	CTNAG	1 cut(s)	266
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	291, 339
LmnI	GCTCC	2 cut(s)	159, 364
LpnPI	CCDG	7 cut(s)	26, 107, 239, 281, 308, 347, 357
Lsp1109I	GCAGC	1 cut(s)	61
MabI	ACCWGGT	1 cut(s)	12
MaeI	CTAG	1 cut(s)	381
MalI	GATC	2 cut(s)	293, 341
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	2 cut(s)	291, 339
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	9 cut(s)	55, 97, 100, 105, 139, 150, 178, 306, 318
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	14, 296
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	2 cut(s)	14, 296
MwoI	GCNNNNNNNGC	4 cut(s)	229, 287, 296, 377
NdeII	GATC	2 cut(s)	291, 339
NheI	GCTAGC	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	51, 73
Psp6I	CCWGG	2 cut(s)	12, 294
PspGI	CCWGG	2 cut(s)	12, 294
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	91, 96
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	11, 41
RsaNI	GTAC	2 cut(s)	10, 40
SatI	GCNGC	2 cut(s)	50, 72
Sau3AI	GATC	2 cut(s)	291, 339
Sau96I	GGNCC	2 cut(s)	91, 96
ScrFI	CCNGG	2 cut(s)	14, 296
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	7 cut(s)	11, 15, 87, 111, 150, 258, 373
SexAI	ACCWGGT	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	91
SsiI	CCGC	3 cut(s)	71, 162, 329
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	12, 294
StyI	CCWWGG	1 cut(s)	99
TaqI	TCGA	1 cut(s)	342
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	1 cut(s)	49
TspRI	CASTG	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	91
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.