Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016267

Physical Location & Seq

Genomic Coordinates Reverse (-)

17998581 .. 18000253

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGGTGGCGACAATCGGAGCGGCGTCCCTCGCTCCGATCTTCCAAGAGCTCTGCGATCAAGTCACCCAATCCATGGAGAAGAACACAAAGCTCAAAACCCTCCTGGGATTTTTCCAGTCCACGCTCGATTCCTTCAGAGACCGAATCATCCAGCCCGTTCAAGAAGGCCAGCAGATTTTCCACGATCAAGACGACAAGATCGAGTCCGTCGTCGTCGAATTGCAGAAGGGAGCGAAGCTAATCGCGAAGGTCTCCAAGCTCCGGTCTTGGAGCTATTTCTGGCTGGACAAGTACACGGAGAAGCTTCTGGAATTGGATAGGTACTTCAGGCGTCTGCTGGAGACGACTTGGGTTCGGGAGTTTAGGGTTGTGAGGCAGCAGAATAGGGATGTTAACCACCTGATGGATGGGATGCTTCGGAGAATGTTTGATGCTTATAAGAAGGCCGTGGAGGCCGAAACGGTGCCGTTGAGGACAGAGACGGCGGTGGAGGAGGAGAGGGGAGAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

171

Amino Acids

20.15

Weight (kDa)

6.19

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 136	6.1e-13	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27320
rosa_chinensis	RchiOBHm_Chr6g0296131 RchiOBHm_Chr6g0296141
rosa_laevigata	RLG00000011724
rosa_multiflora	Rmu_co8158884.1_g000001 Rmu_sc0000486.1_g000005 Rmu_sc0003139.1_g000049
rosa_roxburghii	Rroxscaffold_7G00171800 Rroxscaffold_7G00178250
rosa_rugosa	Rorug06G0258700
rosa_samantha	Rh6AG371000 Rh6BG378900 Rh6CG384200 Rh6DG371400
rosa_wichuraiana	Rw6G032320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	466
AccB7I	CCANNNNNTGG	2 cut(s)	76, 406
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	248
AciI	CCGC	3 cut(s)	5, 23, 488
AcuI	CTGAAG	2 cut(s)	121, 313
AcyI	GRCGYC	2 cut(s)	26, 334
AfaI	GTAC	2 cut(s)	296, 326
AfiI	CCNNNNNNNGG	3 cut(s)	76, 264, 406
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	6 cut(s)	52, 94, 241, 262, 276, 307
AluI	AGCT	6 cut(s)	52, 94, 241, 262, 276, 307
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	4 cut(s)	135, 259, 338, 476
AoxI	GGCC	3 cut(s)	169, 447, 456
ApeKI	GCWGC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	400, 404
BceAI	ACGGC	3 cut(s)	434, 454, 501
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	4 cut(s)	135, 259, 338, 476
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	2 cut(s)	24, 380
BlsI	GCNGC	2 cut(s)	25, 381
Bme1390I	CCNGG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	405, 424
BpmI	CTGGAG	1 cut(s)	362
BsaHI	GRCGYC	2 cut(s)	26, 334
BsaI	GGTCTC	2 cut(s)	135, 259
BsaJI	CCNNGG	3 cut(s)	75, 106, 450
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 264, 406
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	75, 106, 450
BseGI	GGATG	4 cut(s)	150, 397, 415, 420
BseLI	CCNNNNNNNGG	3 cut(s)	76, 264, 406
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	509, 512
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	171, 449, 458
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	3 cut(s)	76, 264, 406
BsmAI	GTCTC	4 cut(s)	135, 259, 338, 476
BsmBI	CGTCTC	2 cut(s)	338, 476
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	171, 449, 458
Bso31I	GGTCTC	2 cut(s)	135, 259
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	39, 58, 187, 201
Bsp19I	CCATGG	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	3 cut(s)	5, 23, 488
BspANI	GGCC	3 cut(s)	171, 449, 458
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	2 cut(s)	135, 259
BsrBI	CCGCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	75, 106, 450
BssMI	GATC	4 cut(s)	39, 58, 187, 201
BssNI	GRCGYC	2 cut(s)	26, 334
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	466
BstACI	GRCGYC	2 cut(s)	26, 334
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	2 cut(s)	75, 450
BstF5I	GGATG	4 cut(s)	150, 397, 415, 420
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	4 cut(s)	42, 61, 190, 204
BstMAI	GTCTC	4 cut(s)	135, 259, 338, 476
BstMBI	GATC	4 cut(s)	39, 58, 187, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 455
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	171, 449, 458
BtgI	CCRYGG	2 cut(s)	75, 450
BtsCI	GGATG	4 cut(s)	150, 397, 415, 420
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	173
CseI	GACGC	2 cut(s)	15, 323
Csp6I	GTAC	2 cut(s)	295, 325
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	2 cut(s)	295, 325
DpnI	GATC	4 cut(s)	41, 60, 189, 203
DpnII	GATC	4 cut(s)	39, 58, 187, 201
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	135, 259
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	121, 313
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	338, 476
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	77, 441
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	24, 380
FokI	GGATG	4 cut(s)	137, 404, 422, 427
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	24, 380
GluI	GCNGC	2 cut(s)	24, 380
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	3 cut(s)	171, 449, 458
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	2 cut(s)	15, 323
Hin1I	GRCGYC	2 cut(s)	26, 334
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	131, 147, 206
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	123, 297, 397
Hpy188I	TCNGA	4 cut(s)	20, 39, 140, 423
Hpy188III	TCNNGA	5 cut(s)	164, 191, 247, 311, 359
Hpy8I	GTNNAC	3 cut(s)	123, 297, 397
Hpy99I	CGWCG	3 cut(s)	215, 218, 221
HpyAV	CCTTC	5 cut(s)	145, 161, 223, 244, 439
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 455
Hsp92I	GRCGYC	2 cut(s)	26, 334
Hsp92II	CATG	1 cut(s)	79
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	39, 58, 187, 201
LmnI	GCTCC	5 cut(s)	20, 40, 233, 267, 273
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	405, 424
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	41, 60, 189, 203
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	4 cut(s)	39, 58, 187, 201
MboII	GAAGA	2 cut(s)	34, 94
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	2 cut(s)	221, 314
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	8 cut(s)	41, 113, 369, 448, 468, 487, 490, 495
MseI	TTAA	1 cut(s)	396
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	32, 455
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	39, 58, 187, 201
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	64
NruI	TCGCGA	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 201, 210
PfeI	GAWTC	2 cut(s)	131, 147
PflMI	CCANNNNNTGG	2 cut(s)	76, 406
PkrI	GCNGC	2 cut(s)	25, 381
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	468
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	2 cut(s)	296, 326
RsaNI	GTAC	2 cut(s)	295, 325
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	24, 380
Sau3AI	GATC	4 cut(s)	39, 58, 187, 201
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	9 cut(s)	54, 96, 243, 255, 264, 278, 309, 326, 405
SfaNI	GCATC	2 cut(s)	405, 424
SfiI	GGCCNNNNNGGCC	1 cut(s)	455
Sse9I	AATT	2 cut(s)	221, 314
SsiI	CCGC	3 cut(s)	5, 23, 488
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	129, 204, 219
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	221, 314
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	131, 147
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	199, 314
Van91I	CCANNNNNTGG	2 cut(s)	76, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.