Rmu_sc0003139.1_g000049
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003139.1
Physical Location & Seq
Reverse (-)
209819 .. 210817
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003139.1_g000049.1.cds

Sequence Viewer

Length: 999 bp
atggcggtggcgacaatcggagcggcgtccctcgctccgatcttccaagagctctgcgatcaagtcacccaatccatggagaagaacacaaagctcaaaaccgtcctgggatttttccagtccacgctcaattccttcagagaccgaatcatccagcccgttcaacaaggccagcagattttccacgatcaagacgacaagatcgagtccgtcgtcgtcgaattgcagaagggagcgaagctaatcgcgaaggtctccaagctccggtcttggagctatttctggctggacgagtacacggagaagcttctggaattggataggtacttcaggcgtctgctggagacgacttgggttcgggagtttagggttgtgaggcagcagaatagggatgttaaccacctgatggatgggatgcttcggagaatgtttgatgcttataagaaggccctggaggccgaaacggtgccgttgagaacagagacggcggaggcggcggtgcaggaggagagggggagtggggaagaggaagaggcggcgctggttgtgtttcggaggttgtttgaggcggtgagagaggcggaggagaagaacgaggcgcccaggatgtttaggtacctggtttcggatatagagagcacattgtactcgttgcagccgtttttggaggagatggccgcccacaacaaggtgttggaccggcccaaggaggaggtgaggagtttcagagtggagatggagaagggggtggaggtggttcggaggagcggtggggttggtaagaagtgggagggatacagcaagaagaaatatgagtgtattgatgggctgttggggctgaatcagtgtctgcagagacaggtgtgtattctgagatggcagatggccaagaatgcgatccaggcattggatttggtgaggaaaatggagagggcggtgaatgagatcgaaagcaatgtgggagtgctggagcaagctggagttgctagcacaagttga

Protein Analysis

332

Amino Acids

38.38

Weight (kDa)

6.13

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 3 cut(s) 466, 598, 615
AccB7I CCANNNNNTGG 3 cut(s) 76, 406, 907
AccBSI CCGCTC 2 cut(s) 23, 768
AccII CGCG 1 cut(s) 248
AclWI GGATC 1 cut(s) 892
AcoI YGGCCR 2 cut(s) 675, 885
AcuI CTGAAG 2 cut(s) 121, 313
AcyI GRCGYC 3 cut(s) 26, 334, 599
AfaI GTAC 4 cut(s) 296, 326, 617, 647
AfiI CCNNNNNNNGG 7 cut(s) 76, 264, 406, 625, 688, 706, 907
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 5 cut(s) 105, 450, 602, 618, 900
AluBI AGCT 7 cut(s) 52, 94, 241, 262, 276, 307, 977
AluI AGCT 7 cut(s) 52, 94, 241, 262, 276, 307, 977
Alw21I GWGCWC 2 cut(s) 54, 641
Alw26I GTCTC 5 cut(s) 135, 259, 338, 476, 850
AlwI GGATC 1 cut(s) 892
AlwNI CAGNNNCTG 1 cut(s) 850
AoxI GGCC 6 cut(s) 169, 447, 456, 675, 701, 885
ApeKI GCWGC 2 cut(s) 379, 655
Asp718I GGTACC 1 cut(s) 615
AspLEI GCGC 2 cut(s) 541, 601
AspS9I GGNCC 3 cut(s) 448, 697, 702
AsuHPI GGTGA 5 cut(s) 58, 583, 727, 928, 949
AsuNHI GCTAGC 1 cut(s) 986
AvaII GGWCC 1 cut(s) 697
BalI TGGCCA 1 cut(s) 887
BanI GGYRCC 3 cut(s) 466, 598, 615
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 54, 641
BbvI GCAGC 2 cut(s) 391, 667
BccI CCATC 7 cut(s) 400, 404, 667, 730, 818, 870, 877
BceAI ACGGC 3 cut(s) 454, 501, 643
BciT130I CCWGG 5 cut(s) 107, 452, 604, 620, 902
BciVI GTATCC 1 cut(s) 788
BcoDI GTCTC 5 cut(s) 135, 259, 338, 476, 850
BfaI CTAG 1 cut(s) 987
BfmI CTRYAG 1 cut(s) 851
BfoI RGCGCY 2 cut(s) 542, 602
BfuI GTATCC 1 cut(s) 788
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 6 cut(s) 24, 380, 495, 537, 656, 678
BlsI GCNGC 6 cut(s) 25, 381, 496, 538, 657, 679
Bme1390I CCNGG 5 cut(s) 107, 452, 604, 620, 902
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 3 cut(s) 448, 697, 702
BmiI GGNNCC 3 cut(s) 468, 600, 617
BmrFI CCNGG 5 cut(s) 107, 452, 604, 620, 902
BmsI GCATC 2 cut(s) 405, 424
BmtI GCTAGC 1 cut(s) 990
BpmI CTGGAG 4 cut(s) 362, 473, 989, 999
BsaHI GRCGYC 3 cut(s) 26, 334, 599
BsaI GGTCTC 2 cut(s) 135, 259
BsaJI CCNNGG 5 cut(s) 75, 106, 450, 602, 705
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 754, 784
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 264, 406, 625, 688, 706, 907
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 961
BseBI CCWGG 5 cut(s) 107, 452, 604, 620, 902
BseDI CCNNGG 5 cut(s) 75, 106, 450, 602, 705
BseGI GGATG 5 cut(s) 150, 397, 415, 420, 612
BseLI CCNNNNNNNGG 7 cut(s) 76, 264, 406, 625, 688, 706, 907
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 1 cut(s) 863
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 6 cut(s) 521, 599, 683, 725, 733, 778
BseXI GCAGC 2 cut(s) 391, 667
BsgI GTGCAG 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 6 cut(s) 171, 449, 458, 677, 703, 887
BshNI GGYRCC 3 cut(s) 466, 598, 615
BsiHKAI GWGCWC 2 cut(s) 54, 641
BsiSI CCGG 2 cut(s) 265, 700
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 7 cut(s) 76, 264, 406, 625, 688, 706, 907
BsmAI GTCTC 5 cut(s) 135, 259, 338, 476, 850
BsmBI CGTCTC 2 cut(s) 338, 476
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 6 cut(s) 171, 449, 458, 677, 703, 887
Bso31I GGTCTC 2 cut(s) 135, 259
Bsp1286I GDGCHC 2 cut(s) 54, 641
Bsp143I GATC 6 cut(s) 39, 58, 187, 201, 897, 945
Bsp19I CCATGG 1 cut(s) 75
Bsp68I TCGCGA 1 cut(s) 248
BspANI GGCC 6 cut(s) 171, 449, 458, 677, 703, 887
BspCNI CTCAG 1 cut(s) 864
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 468, 600, 617
BspMAI CTGCAG 1 cut(s) 855
BspOI GCTAGC 1 cut(s) 990
BspPI GGATC 1 cut(s) 892
BspT107I GGYRCC 3 cut(s) 466, 598, 615
BspTNI GGTCTC 2 cut(s) 135, 259
BsrBI CCGCTC 2 cut(s) 23, 768
BsrDI GCAATG 1 cut(s) 961
BsrFI RCCGGY 1 cut(s) 699
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 5 cut(s) 75, 106, 450, 602, 705
BssMI GATC 6 cut(s) 39, 58, 187, 201, 897, 945
BssNI GRCGYC 3 cut(s) 26, 334, 599
BssT1I CCWWGG 2 cut(s) 75, 705
Bst2UI CCWGG 5 cut(s) 107, 452, 604, 620, 902
Bst4CI ACNGT 2 cut(s) 103, 466
Bst6I CTCTTC 2 cut(s) 519, 525
BstACI GRCGYC 3 cut(s) 26, 334, 599
BstC8I GCNNGC 3 cut(s) 173, 975, 988
BstDEI CTNAG 1 cut(s) 872
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 5 cut(s) 150, 397, 415, 420, 612
BstFNI CGCG 1 cut(s) 248
BstH2I RGCGCY 2 cut(s) 542, 602
BstHHI GCGC 2 cut(s) 541, 601
BstKTI GATC 6 cut(s) 42, 61, 190, 204, 900, 948
BstMAI GTCTC 5 cut(s) 135, 259, 338, 476, 850
BstMBI GATC 6 cut(s) 39, 58, 187, 201, 897, 945
BstMWI GCNNNNNNNGC 7 cut(s) 32, 455, 494, 835, 893, 902, 983
BstNI CCWGG 5 cut(s) 107, 452, 604, 620, 902
BstSCI CCNGG 5 cut(s) 105, 450, 602, 618, 900
BstSFI CTRYAG 1 cut(s) 851
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 391, 667
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 6 cut(s) 171, 449, 458, 677, 703, 887
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 5 cut(s) 150, 397, 415, 420, 612
BtsIMutI CAGTG 1 cut(s) 851
BtuMI TCGCGA 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 173, 975, 988
CaiI CAGNNNCTG 1 cut(s) 850
CfoI GCGC 2 cut(s) 541, 601
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 448, 697, 702
CseI GACGC 2 cut(s) 15, 323
CsiI ACCWGGT 1 cut(s) 618
Csp6I GTAC 4 cut(s) 295, 325, 616, 646
CviAII CATG 1 cut(s) 76
CviQI GTAC 4 cut(s) 295, 325, 616, 646
DdeI CTNAG 1 cut(s) 872
DinI GGCGCC 1 cut(s) 600
DpnI GATC 6 cut(s) 41, 60, 189, 203, 899, 947
DpnII GATC 6 cut(s) 39, 58, 187, 201, 897, 945
EaeI YGGCCR 2 cut(s) 675, 885
Eam1104I CTCTTC 2 cut(s) 519, 525
EarI CTCTTC 2 cut(s) 519, 525
EciI GGCGGA 2 cut(s) 503, 596
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 75, 705
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 2 cut(s) 135, 259
Eco47I GGWCC 1 cut(s) 697
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 121, 313
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 448
EcoRII CCWGG 5 cut(s) 105, 450, 602, 618, 900
EcoT14I CCWWGG 2 cut(s) 75, 705
EcoT38I GRGCYC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 600
EheI GGCGCC 1 cut(s) 600
ErhI CCWWGG 2 cut(s) 75, 705
Esp3I CGTCTC 2 cut(s) 338, 476
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 77, 441, 632, 813
FaqI GGGAC 1 cut(s) 13
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 6 cut(s) 24, 380, 495, 537, 656, 678
FokI GGATG 5 cut(s) 137, 404, 422, 427, 619
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 6 cut(s) 24, 380, 495, 537, 656, 678
FspBI CTAG 1 cut(s) 987
GlaI GCGC 2 cut(s) 540, 600
GluI GCNGC 6 cut(s) 24, 380, 495, 537, 656, 678
GsuI CTGGAG 4 cut(s) 362, 473, 989, 999
HaeII RGCGCY 2 cut(s) 542, 602
HaeIII GGCC 6 cut(s) 171, 449, 458, 677, 703, 887
HapII CCGG 2 cut(s) 265, 700
HgaI GACGC 2 cut(s) 15, 323
HhaI GCGC 2 cut(s) 541, 601
Hin1I GRCGYC 3 cut(s) 26, 334, 599
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 2 cut(s) 539, 599
HinP1I GCGC 2 cut(s) 539, 599
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 147, 206, 841
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 2 cut(s) 265, 700
HphI GGTGA 5 cut(s) 58, 583, 727, 928, 949
Hpy166II GTNNAC 3 cut(s) 123, 297, 397
Hpy188I TCNGA 9 cut(s) 20, 39, 140, 423, 555, 628, 728, 762, 873
Hpy188III TCNNGA 4 cut(s) 191, 247, 311, 359
Hpy8I GTNNAC 3 cut(s) 123, 297, 397
Hpy99I CGWCG 3 cut(s) 215, 218, 221
HpyAV CCTTC 5 cut(s) 145, 223, 244, 439, 736
HpyCH4III ACNGT 2 cut(s) 103, 466
HpyCH4V TGCA 4 cut(s) 226, 502, 655, 853
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 455, 494, 835, 893, 902, 983
HpyF3I CTNAG 1 cut(s) 872
Hsp92I GRCGYC 3 cut(s) 26, 334, 599
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 2 cut(s) 539, 599
KasI GGCGCC 1 cut(s) 598
KpnI GGTACC 1 cut(s) 619
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 6 cut(s) 39, 58, 187, 201, 897, 945
LmnI GCTCC 7 cut(s) 20, 40, 233, 267, 273, 765, 970
Lsp1109I GCAGC 2 cut(s) 391, 667
LweI GCATC 2 cut(s) 405, 424
MabI ACCWGGT 1 cut(s) 618
MaeI CTAG 1 cut(s) 987
MaeIII GTNAC 1 cut(s) 64
MalI GATC 6 cut(s) 41, 60, 189, 203, 899, 947
MbiI CCGCTC 2 cut(s) 23, 768
MboI GATC 6 cut(s) 39, 58, 187, 201, 897, 945
MboII GAAGA 6 cut(s) 34, 94, 536, 542, 601, 817
MhlI GDGCHC 2 cut(s) 54, 641
MlsI TGGCCA 1 cut(s) 887
MluCI AATT 3 cut(s) 130, 221, 314
MluNI TGGCCA 1 cut(s) 887
Mly113I GGCGCC 1 cut(s) 599
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 675
Mox20I TGGCCA 1 cut(s) 887
MscI TGGCCA 1 cut(s) 887
MseI TTAA 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 887
MspI CCGG 2 cut(s) 265, 700
MspR9I CCNGG 5 cut(s) 107, 452, 604, 620, 902
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 5 cut(s) 107, 452, 604, 620, 902
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 7 cut(s) 32, 455, 494, 835, 893, 902, 983
NarI GGCGCC 1 cut(s) 599
NcoI CCATGG 1 cut(s) 75
NdeII GATC 6 cut(s) 39, 58, 187, 201, 897, 945
NheI GCTAGC 1 cut(s) 986
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 3 cut(s) 468, 600, 617
NmuCI GTSAC 1 cut(s) 64
NruI TCGCGA 1 cut(s) 248
PcsI WCGNNNNNNNCGW 4 cut(s) 192, 201, 210, 656
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 2 cut(s) 147, 841
PflMI CCANNNNNTGG 3 cut(s) 76, 406, 907
PkrI GCNGC 6 cut(s) 25, 381, 496, 538, 657, 679
PleI GAGTC 1 cut(s) 214
PluTI GGCGCC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 5 cut(s) 105, 450, 602, 618, 900
PspGI CCWGG 5 cut(s) 105, 450, 602, 618, 900
PspN4I GGNNCC 3 cut(s) 468, 600, 617
PspPI GGNCC 3 cut(s) 448, 697, 702
PstI CTGCAG 1 cut(s) 855
PstNI CAGNNNCTG 1 cut(s) 850
RruI TCGCGA 1 cut(s) 248
RsaI GTAC 4 cut(s) 296, 326, 617, 647
RsaNI GTAC 4 cut(s) 295, 325, 616, 646
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 6 cut(s) 24, 380, 495, 537, 656, 678
Sau3AI GATC 6 cut(s) 39, 58, 187, 201, 897, 945
Sau96I GGNCC 3 cut(s) 448, 697, 702
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 5 cut(s) 107, 452, 604, 620, 902
SduI GDGCHC 2 cut(s) 54, 641
SexAI ACCWGGT 1 cut(s) 618
SfaNI GCATC 2 cut(s) 405, 424
SfcI CTRYAG 1 cut(s) 851
SfiI GGCCNNNNNGGCC 1 cut(s) 455
SfoI GGCGCC 1 cut(s) 600
SinI GGWCC 1 cut(s) 697
Sse9I AATT 3 cut(s) 130, 221, 314
SspDI GGCGCC 1 cut(s) 598
SspMI CTAG 1 cut(s) 987
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 5 cut(s) 105, 450, 602, 618, 900
StyI CCWWGG 2 cut(s) 75, 705
TaaI ACNGT 2 cut(s) 103, 466
TaqI TCGA 3 cut(s) 204, 219, 948
TaqII GACCGA 1 cut(s) 159
TasI AATT 3 cut(s) 130, 221, 314
TatI WGTACW 2 cut(s) 294, 645
TauI GCSGC 4 cut(s) 26, 497, 539, 680
TfiI GAWTC 2 cut(s) 147, 841
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 851
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 379, 655
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 2 cut(s) 199, 314
TspRI CASTG 1 cut(s) 851
Van91I CCANNNNNTGG 3 cut(s) 76, 406, 907
VpaK11BI GGWCC 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.