Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8158884.1

Orthogroup ID

OG0016267

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 659

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8158884.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 659 bp

atggcggtggcgacaatcggagcggcgtccctcgctccgatcttccaagagctctgcgatcaagtcacccaatccatggagaagaacacaaagctcaaaaccgtcctgggatttttccagtccacgctcaattccttcagagaccgaatcatccagcccgttcaacaaggccagcagattttccacgatcaagacgacaagatcgagtccgtcgtcgtcgaattgcagaagggagcgaagctaatcgcgaaggtctccaagctccggtcttggagctatttctggctggacgagtacacggagaagcttctggaattggataggtacttcaggcgtctgctggagacgacttgggttcgggagtttagggttgtgaggcagcagaatagggatgttaaccacctgatggatgggatgcttcggagaatgtttgatgcttataagaaggccctggaggccgaaacggtgccgttgagaacagagacggcggaggcggcggtgcaggaggagagggggagtggggaagaggaagaggcggcgctggttgtgtttcggaggttgtttgaggcggtgagagaggcggaggagaagaacgaggcgcccaggatgtttaggtacctggtttcggatatagagagcacattgtactcgttgcagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

220

Amino Acids

25.69

Weight (kDa)

5.34

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27320
rosa_chinensis	RchiOBHm_Chr6g0296131 RchiOBHm_Chr6g0296141
rosa_laevigata	RLG00000011724
rosa_multiflora	Rmu_co8158884.1_g000001 Rmu_sc0000486.1_g000005 Rmu_sc0003139.1_g000049
rosa_roxburghii	Rroxscaffold_7G00171800 Rroxscaffold_7G00178250
rosa_rugosa	Rorug06G0258700
rosa_samantha	Rh6AG371000 Rh6BG378900 Rh6CG384200 Rh6DG371400
rosa_wichuraiana	Rw6G032320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
Acc65I	GGTACC	1 cut(s)	615
AccB1I	GGYRCC	3 cut(s)	466, 598, 615
AccB7I	CCANNNNNTGG	2 cut(s)	76, 406
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	248
AciI	CCGC	8 cut(s)	5, 23, 488, 494, 497, 536, 569, 581
AcuI	CTGAAG	2 cut(s)	121, 313
AcyI	GRCGYC	3 cut(s)	26, 334, 599
AfaI	GTAC	4 cut(s)	296, 326, 617, 647
AfiI	CCNNNNNNNGG	4 cut(s)	76, 264, 406, 625
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	4 cut(s)	105, 450, 602, 618
AluBI	AGCT	6 cut(s)	52, 94, 241, 262, 276, 307
AluI	AGCT	6 cut(s)	52, 94, 241, 262, 276, 307
Alw21I	GWGCWC	2 cut(s)	54, 641
Alw26I	GTCTC	4 cut(s)	135, 259, 338, 476
AoxI	GGCC	3 cut(s)	169, 447, 456
ApeKI	GCWGC	2 cut(s)	379, 655
Asp718I	GGTACC	1 cut(s)	615
AspLEI	GCGC	2 cut(s)	541, 601
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	58, 583
BanI	GGYRCC	3 cut(s)	466, 598, 615
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	54, 641
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	400, 404
BceAI	ACGGC	2 cut(s)	454, 501
BciT130I	CCWGG	4 cut(s)	107, 452, 604, 620
BcoDI	GTCTC	4 cut(s)	135, 259, 338, 476
BfoI	RGCGCY	2 cut(s)	542, 602
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	5 cut(s)	24, 380, 495, 537, 656
BlsI	GCNGC	5 cut(s)	25, 381, 496, 538, 657
Bme1390I	CCNGG	4 cut(s)	107, 452, 604, 620
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	3 cut(s)	468, 600, 617
BmrFI	CCNGG	4 cut(s)	107, 452, 604, 620
BmsI	GCATC	2 cut(s)	405, 424
BpmI	CTGGAG	2 cut(s)	362, 473
BsaHI	GRCGYC	3 cut(s)	26, 334, 599
BsaI	GGTCTC	2 cut(s)	135, 259
BsaJI	CCNNGG	4 cut(s)	75, 106, 450, 602
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 264, 406, 625
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	4 cut(s)	107, 452, 604, 620
BseDI	CCNNGG	4 cut(s)	75, 106, 450, 602
BseGI	GGATG	5 cut(s)	150, 397, 415, 420, 612
BseLI	CCNNNNNNNGG	4 cut(s)	76, 264, 406, 625
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	521, 599
BseXI	GCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	171, 449, 458
BshNI	GGYRCC	3 cut(s)	466, 598, 615
BsiHKAI	GWGCWC	2 cut(s)	54, 641
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	4 cut(s)	76, 264, 406, 625
BsmAI	GTCTC	4 cut(s)	135, 259, 338, 476
BsmBI	CGTCTC	2 cut(s)	338, 476
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	171, 449, 458
Bso31I	GGTCTC	2 cut(s)	135, 259
Bsp1286I	GDGCHC	2 cut(s)	54, 641
Bsp143I	GATC	4 cut(s)	39, 58, 187, 201
Bsp19I	CCATGG	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	8 cut(s)	5, 23, 488, 494, 497, 536, 569, 581
BspANI	GGCC	3 cut(s)	171, 449, 458
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	468, 600, 617
BspT107I	GGYRCC	3 cut(s)	466, 598, 615
BspTNI	GGTCTC	2 cut(s)	135, 259
BsrBI	CCGCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	75, 106, 450, 602
BssMI	GATC	4 cut(s)	39, 58, 187, 201
BssNI	GRCGYC	3 cut(s)	26, 334, 599
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	4 cut(s)	107, 452, 604, 620
Bst4CI	ACNGT	2 cut(s)	103, 466
Bst6I	CTCTTC	2 cut(s)	519, 525
BstACI	GRCGYC	3 cut(s)	26, 334, 599
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	5 cut(s)	150, 397, 415, 420, 612
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	542, 602
BstHHI	GCGC	2 cut(s)	541, 601
BstKTI	GATC	4 cut(s)	42, 61, 190, 204
BstMAI	GTCTC	4 cut(s)	135, 259, 338, 476
BstMBI	GATC	4 cut(s)	39, 58, 187, 201
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 455, 494
BstNI	CCWGG	4 cut(s)	107, 452, 604, 620
BstSCI	CCNGG	4 cut(s)	105, 450, 602, 618
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	171, 449, 458
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	150, 397, 415, 420, 612
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	2 cut(s)	541, 601
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	2 cut(s)	15, 323
CsiI	ACCWGGT	1 cut(s)	618
Csp6I	GTAC	4 cut(s)	295, 325, 616, 646
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	4 cut(s)	295, 325, 616, 646
DinI	GGCGCC	1 cut(s)	600
DpnI	GATC	4 cut(s)	41, 60, 189, 203
DpnII	GATC	4 cut(s)	39, 58, 187, 201
Eam1104I	CTCTTC	2 cut(s)	519, 525
EarI	CTCTTC	2 cut(s)	519, 525
EciI	GGCGGA	2 cut(s)	503, 596
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	135, 259
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	121, 313
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	4 cut(s)	105, 450, 602, 618
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	600
EheI	GGCGCC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	338, 476
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 441, 632
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	24, 380, 495, 537, 656
FokI	GGATG	5 cut(s)	137, 404, 422, 427, 619
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	5 cut(s)	24, 380, 495, 537, 656
GlaI	GCGC	2 cut(s)	540, 600
GluI	GCNGC	5 cut(s)	24, 380, 495, 537, 656
GsuI	CTGGAG	2 cut(s)	362, 473
HaeII	RGCGCY	2 cut(s)	542, 602
HaeIII	GGCC	3 cut(s)	171, 449, 458
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	2 cut(s)	15, 323
HhaI	GCGC	2 cut(s)	541, 601
Hin1I	GRCGYC	3 cut(s)	26, 334, 599
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	539, 599
HinP1I	GCGC	2 cut(s)	539, 599
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	147, 206
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	58, 583
Hpy166II	GTNNAC	3 cut(s)	123, 297, 397
Hpy188I	TCNGA	6 cut(s)	20, 39, 140, 423, 555, 628
Hpy188III	TCNNGA	4 cut(s)	191, 247, 311, 359
Hpy8I	GTNNAC	3 cut(s)	123, 297, 397
Hpy99I	CGWCG	3 cut(s)	215, 218, 221
HpyAV	CCTTC	4 cut(s)	145, 223, 244, 439
HpyCH4III	ACNGT	2 cut(s)	103, 466
HpyCH4V	TGCA	3 cut(s)	226, 502, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 455, 494
Hsp92I	GRCGYC	3 cut(s)	26, 334, 599
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	539, 599
KasI	GGCGCC	1 cut(s)	598
KpnI	GGTACC	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	39, 58, 187, 201
LmnI	GCTCC	5 cut(s)	20, 40, 233, 267, 273
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	405, 424
MabI	ACCWGGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	41, 60, 189, 203
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	4 cut(s)	39, 58, 187, 201
MboII	GAAGA	5 cut(s)	34, 94, 536, 542, 601
MhlI	GDGCHC	2 cut(s)	54, 641
MluCI	AATT	3 cut(s)	130, 221, 314
Mly113I	GGCGCC	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	396
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	4 cut(s)	107, 452, 604, 620
MvaI	CCWGG	4 cut(s)	107, 452, 604, 620
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	32, 455, 494
NarI	GGCGCC	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	39, 58, 187, 201
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	468, 600, 617
NmuCI	GTSAC	1 cut(s)	64
NruI	TCGCGA	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 201, 210
PfeI	GAWTC	1 cut(s)	147
PflMI	CCANNNNNTGG	2 cut(s)	76, 406
PkrI	GCNGC	5 cut(s)	25, 381, 496, 538, 657
PleI	GAGTC	1 cut(s)	214
PluTI	GGCGCC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	4 cut(s)	105, 450, 602, 618
PspGI	CCWGG	4 cut(s)	105, 450, 602, 618
PspN4I	GGNNCC	3 cut(s)	468, 600, 617
PspPI	GGNCC	1 cut(s)	448
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	4 cut(s)	296, 326, 617, 647
RsaNI	GTAC	4 cut(s)	295, 325, 616, 646
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	24, 380, 495, 537, 656
Sau3AI	GATC	4 cut(s)	39, 58, 187, 201
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	4 cut(s)	107, 452, 604, 620
SduI	GDGCHC	2 cut(s)	54, 641
SexAI	ACCWGGT	1 cut(s)	618
SfaNI	GCATC	2 cut(s)	405, 424
SfiI	GGCCNNNNNGGCC	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	600
Sse9I	AATT	3 cut(s)	130, 221, 314
SsiI	CCGC	8 cut(s)	5, 23, 488, 494, 497, 536, 569, 581
SspDI	GGCGCC	1 cut(s)	598
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	105, 450, 602, 618
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	103, 466
TaqI	TCGA	2 cut(s)	204, 219
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	130, 221, 314
TatI	WGTACW	2 cut(s)	294, 645
TauI	GCSGC	3 cut(s)	26, 497, 539
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	379, 655
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	199, 314
Van91I	CCANNNNNTGG	2 cut(s)	76, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.