Rroxscaffold_7G00171800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
12086457 .. 12087446
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171800.1

Sequence Viewer

Length: 990 bp
ATGGCGGTGGCGACAATCGGAGCGGCGTCCCTCGCTCCGATCTTCCAAGAGCTCTGCGATCAAGTCACCCAATCCATGGAGAAGAACACAAAGCTCAAAACCCTCCTGGGATTTTTCCAGTCCACGCTCGATTCCTTCAGAGACCGAATCATCCAGCCCGTTCAAGAAGGCCAGCAGATTTTCCACGATCAAGACGACAAGATCGAGTCCGTCGTCGTCGAATTGCAGAAGGGAGCGAAGCTAATCGCGAAGGTCTCCAAGCTCCGGTCTTGGAGCTATTTCTGGCTGGACAAGTACACGGAGAAGCTTCTGGAATTGGATAGGTACTTCAGGCGTCTGCTGGAGACGACTTGGGTTCGGGAGTTTAGGGTTGTGAGGCAGCAGAATAGGGATGTTAACCACCTGATGGATGGGATGCTTCGGAGAATGTTTGATGCTTATAAGAAGGCCGTGGAGGCCGAAACGGTGCCGTTGAGGACAGAGACGGCGGTGGAGGAGGAGAGGGAGAGTGGTGAAGAGGAAGAGGCGGCGCTGGTTGTGTTTCGGAGGTTGTTTGAGGCGGTGAGAGAGGCGGAGGAGAAGAACGAGGCGCCCAGGATGTTTAGGTACCTGGTTTCGGATATAGAGAGCACATTGTACTCGTTGCAGCCGTTTTTGGAGGAGATGGCGGCCCACAACAAGGTGTTGGACCGGCCCAAGGAGGAGGTGAGGAGTTTCAGAGTGGAGATGGAGAAGGGGGTGGAGGTGGTTCGGAGGAGCGGTGGGGTTGGTAAGAAGTGGGAGGGATACAGCAAGAACAAATATGAGTGTATTGATGGGCTGTTGGGGCTGAATCAGTGTCTGCAGAGACAGGTGTGTATTCTGAGATGGCAGATGTCGATGAATGCGATCCAGGCATTGGATTTGGTGAGGAAAATGGAGAGGGCGGTGAATGAGATCGAAAGCAATGTGGGAGTGCTGGAGCAAGCTGGAGTTGCTAGCACAAGTTGA

Protein Analysis

329

Amino Acids

38.19

Weight (kDa)

5.61

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 117 3.8e-12 Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8 PF05659 180 - 286 3.9e-11 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 606
AccB1I GGYRCC 3 cut(s) 466, 589, 606
AccB7I CCANNNNNTGG 3 cut(s) 76, 406, 898
AccBSI CCGCTC 2 cut(s) 23, 759
AccII CGCG 1 cut(s) 248
AciI CCGC 9 cut(s) 5, 23, 488, 527, 560, 572, 668, 759, 926
AclWI GGATC 1 cut(s) 883
AcuI CTGAAG 2 cut(s) 121, 313
AcyI GRCGYC 3 cut(s) 26, 334, 590
AfaI GTAC 4 cut(s) 296, 326, 608, 638
AfiI CCNNNNNNNGG 7 cut(s) 76, 264, 406, 616, 679, 697, 898
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 4 cut(s) 105, 593, 609, 891
AluBI AGCT 7 cut(s) 52, 94, 241, 262, 276, 307, 968
AluI AGCT 7 cut(s) 52, 94, 241, 262, 276, 307, 968
Alw21I GWGCWC 2 cut(s) 54, 632
Alw26I GTCTC 5 cut(s) 135, 259, 338, 476, 841
AlwI GGATC 1 cut(s) 883
AlwNI CAGNNNCTG 1 cut(s) 841
AoxI GGCC 5 cut(s) 169, 447, 456, 669, 692
ApeKI GCWGC 2 cut(s) 379, 646
Asp718I GGTACC 1 cut(s) 606
AspLEI GCGC 2 cut(s) 532, 592
AspS9I GGNCC 3 cut(s) 670, 688, 693
AsuHPI GGTGA 6 cut(s) 58, 524, 574, 718, 919, 940
AsuNHI GCTAGC 1 cut(s) 977
AvaII GGWCC 1 cut(s) 688
BanI GGYRCC 3 cut(s) 466, 589, 606
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 54, 632
BbvI GCAGC 2 cut(s) 391, 658
BccI CCATC 6 cut(s) 400, 404, 658, 721, 809, 861
BceAI ACGGC 4 cut(s) 434, 454, 501, 634
BciT130I CCWGG 4 cut(s) 107, 595, 611, 893
BciVI GTATCC 1 cut(s) 779
BcoDI GTCTC 5 cut(s) 135, 259, 338, 476, 841
BfaI CTAG 1 cut(s) 978
BfmI CTRYAG 1 cut(s) 842
BfoI RGCGCY 2 cut(s) 533, 593
BfuI GTATCC 1 cut(s) 779
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 5 cut(s) 24, 380, 528, 647, 669
BlsI GCNGC 5 cut(s) 25, 381, 529, 648, 670
Bme1390I CCNGG 4 cut(s) 107, 595, 611, 893
Bme18I GGWCC 1 cut(s) 688
BmgT120I GGNCC 3 cut(s) 670, 688, 693
BmiI GGNNCC 3 cut(s) 468, 591, 608
BmrFI CCNGG 4 cut(s) 107, 595, 611, 893
BmsI GCATC 2 cut(s) 405, 424
BmtI GCTAGC 1 cut(s) 981
BpmI CTGGAG 3 cut(s) 362, 980, 990
BsaHI GRCGYC 3 cut(s) 26, 334, 590
BsaI GGTCTC 2 cut(s) 135, 259
BsaJI CCNNGG 5 cut(s) 75, 106, 450, 593, 696
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 264, 406, 616, 679, 697, 898
Bse118I RCCGGY 1 cut(s) 690
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 952
BseBI CCWGG 4 cut(s) 107, 595, 611, 893
BseDI CCNNGG 5 cut(s) 75, 106, 450, 593, 696
BseGI GGATG 5 cut(s) 150, 397, 415, 420, 603
BseLI CCNNNNNNNGG 7 cut(s) 76, 264, 406, 616, 679, 697, 898
BseMI GCAATG 1 cut(s) 952
BseMII CTCAG 1 cut(s) 854
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 7 cut(s) 509, 512, 590, 674, 716, 724, 769
BseXI GCAGC 2 cut(s) 391, 658
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 5 cut(s) 171, 449, 458, 671, 694
BshNI GGYRCC 3 cut(s) 466, 589, 606
BsiHKAI GWGCWC 2 cut(s) 54, 632
BsiSI CCGG 2 cut(s) 265, 691
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 7 cut(s) 76, 264, 406, 616, 679, 697, 898
BsmAI GTCTC 5 cut(s) 135, 259, 338, 476, 841
BsmBI CGTCTC 2 cut(s) 338, 476
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 5 cut(s) 171, 449, 458, 671, 694
Bso31I GGTCTC 2 cut(s) 135, 259
Bsp1286I GDGCHC 2 cut(s) 54, 632
Bsp143I GATC 6 cut(s) 39, 58, 187, 201, 888, 936
Bsp19I CCATGG 1 cut(s) 75
Bsp68I TCGCGA 1 cut(s) 248
BspACI CCGC 9 cut(s) 5, 23, 488, 527, 560, 572, 668, 759, 926
BspANI GGCC 5 cut(s) 171, 449, 458, 671, 694
BspCNI CTCAG 1 cut(s) 855
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 468, 591, 608
BspMAI CTGCAG 1 cut(s) 846
BspOI GCTAGC 1 cut(s) 981
BspPI GGATC 1 cut(s) 883
BspT107I GGYRCC 3 cut(s) 466, 589, 606
BspTNI GGTCTC 2 cut(s) 135, 259
BsrBI CCGCTC 2 cut(s) 23, 759
BsrDI GCAATG 1 cut(s) 952
BsrFI RCCGGY 1 cut(s) 690
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 690
BssECI CCNNGG 5 cut(s) 75, 106, 450, 593, 696
BssMI GATC 6 cut(s) 39, 58, 187, 201, 888, 936
BssNI GRCGYC 3 cut(s) 26, 334, 590
BssT1I CCWWGG 2 cut(s) 75, 696
Bst2UI CCWGG 4 cut(s) 107, 595, 611, 893
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 510, 516
BstACI GRCGYC 3 cut(s) 26, 334, 590
BstC8I GCNNGC 3 cut(s) 173, 966, 979
BstDEI CTNAG 1 cut(s) 863
BstDSI CCRYGG 2 cut(s) 75, 450
BstF5I GGATG 5 cut(s) 150, 397, 415, 420, 603
BstFNI CGCG 1 cut(s) 248
BstH2I RGCGCY 2 cut(s) 533, 593
BstHHI GCGC 2 cut(s) 532, 592
BstKTI GATC 6 cut(s) 42, 61, 190, 204, 891, 939
BstMAI GTCTC 5 cut(s) 135, 259, 338, 476, 841
BstMBI GATC 6 cut(s) 39, 58, 187, 201, 888, 936
BstMWI GCNNNNNNNGC 5 cut(s) 32, 455, 826, 893, 974
BstNI CCWGG 4 cut(s) 107, 595, 611, 893
BstSCI CCNGG 4 cut(s) 105, 593, 609, 891
BstSFI CTRYAG 1 cut(s) 842
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 391, 658
BsuI GTATCC 1 cut(s) 779
BsuRI GGCC 5 cut(s) 171, 449, 458, 671, 694
BtgI CCRYGG 2 cut(s) 75, 450
BtsCI GGATG 5 cut(s) 150, 397, 415, 420, 603
BtsIMutI CAGTG 1 cut(s) 842
BtuMI TCGCGA 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 173, 966, 979
CaiI CAGNNNCTG 1 cut(s) 841
CfoI GCGC 2 cut(s) 532, 592
Cfr10I RCCGGY 1 cut(s) 690
Cfr13I GGNCC 3 cut(s) 670, 688, 693
CseI GACGC 2 cut(s) 15, 323
CsiI ACCWGGT 1 cut(s) 609
Csp6I GTAC 4 cut(s) 295, 325, 607, 637
CviAII CATG 1 cut(s) 76
CviQI GTAC 4 cut(s) 295, 325, 607, 637
DdeI CTNAG 1 cut(s) 863
DinI GGCGCC 1 cut(s) 591
DpnI GATC 6 cut(s) 41, 60, 189, 203, 890, 938
DpnII GATC 6 cut(s) 39, 58, 187, 201, 888, 936
Eam1104I CTCTTC 2 cut(s) 510, 516
EarI CTCTTC 2 cut(s) 510, 516
EciI GGCGGA 1 cut(s) 587
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 75, 696
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 2 cut(s) 135, 259
Eco47I GGWCC 1 cut(s) 688
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 121, 313
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 4 cut(s) 105, 593, 609, 891
EcoT14I CCWWGG 2 cut(s) 75, 696
EcoT38I GRGCYC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 591
EheI GGCGCC 1 cut(s) 591
ErhI CCWWGG 2 cut(s) 75, 696
Esp3I CGTCTC 2 cut(s) 338, 476
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 77, 441, 623, 804
FaqI GGGAC 1 cut(s) 13
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 5 cut(s) 24, 380, 528, 647, 669
FokI GGATG 5 cut(s) 137, 404, 422, 427, 610
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 5 cut(s) 24, 380, 528, 647, 669
FspBI CTAG 1 cut(s) 978
GlaI GCGC 2 cut(s) 531, 591
GluI GCNGC 5 cut(s) 24, 380, 528, 647, 669
GsuI CTGGAG 3 cut(s) 362, 980, 990
HaeII RGCGCY 2 cut(s) 533, 593
HaeIII GGCC 5 cut(s) 171, 449, 458, 671, 694
HapII CCGG 2 cut(s) 265, 691
HgaI GACGC 2 cut(s) 15, 323
HhaI GCGC 2 cut(s) 532, 592
Hin1I GRCGYC 3 cut(s) 26, 334, 590
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 2 cut(s) 530, 590
HinP1I GCGC 2 cut(s) 530, 590
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 4 cut(s) 131, 147, 206, 832
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 2 cut(s) 265, 691
HphI GGTGA 6 cut(s) 58, 524, 574, 718, 919, 940
Hpy166II GTNNAC 3 cut(s) 123, 297, 397
Hpy188I TCNGA 9 cut(s) 20, 39, 140, 423, 546, 619, 719, 753, 864
Hpy188III TCNNGA 5 cut(s) 164, 191, 247, 311, 359
Hpy8I GTNNAC 3 cut(s) 123, 297, 397
Hpy99I CGWCG 3 cut(s) 215, 218, 221
HpyAV CCTTC 6 cut(s) 145, 161, 223, 244, 439, 727
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 226, 646, 844
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 455, 826, 893, 974
HpyF3I CTNAG 1 cut(s) 863
Hsp92I GRCGYC 3 cut(s) 26, 334, 590
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 2 cut(s) 530, 590
KasI GGCGCC 1 cut(s) 589
KpnI GGTACC 1 cut(s) 610
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 6 cut(s) 39, 58, 187, 201, 888, 936
LmnI GCTCC 7 cut(s) 20, 40, 233, 267, 273, 756, 961
Lsp1109I GCAGC 2 cut(s) 391, 658
LweI GCATC 2 cut(s) 405, 424
MabI ACCWGGT 1 cut(s) 609
MaeI CTAG 1 cut(s) 978
MaeIII GTNAC 1 cut(s) 64
MalI GATC 6 cut(s) 41, 60, 189, 203, 890, 938
MbiI CCGCTC 2 cut(s) 23, 759
MboI GATC 6 cut(s) 39, 58, 187, 201, 888, 936
MboII GAAGA 5 cut(s) 34, 94, 527, 533, 592
MhlI GDGCHC 2 cut(s) 54, 632
MluCI AATT 2 cut(s) 221, 314
Mly113I GGCGCC 1 cut(s) 590
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 666
MseI TTAA 1 cut(s) 396
MspI CCGG 2 cut(s) 265, 691
MspR9I CCNGG 4 cut(s) 107, 595, 611, 893
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 4 cut(s) 107, 595, 611, 893
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 32, 455, 826, 893, 974
NarI GGCGCC 1 cut(s) 590
NcoI CCATGG 1 cut(s) 75
NdeII GATC 6 cut(s) 39, 58, 187, 201, 888, 936
NheI GCTAGC 1 cut(s) 977
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 3 cut(s) 468, 591, 608
NmuCI GTSAC 1 cut(s) 64
NruI TCGCGA 1 cut(s) 248
PcsI WCGNNNNNNNCGW 5 cut(s) 192, 201, 210, 647, 884
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 3 cut(s) 131, 147, 832
PflMI CCANNNNNTGG 3 cut(s) 76, 406, 898
PkrI GCNGC 5 cut(s) 25, 381, 529, 648, 670
PleI GAGTC 1 cut(s) 214
PluTI GGCGCC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 4 cut(s) 105, 593, 609, 891
PspGI CCWGG 4 cut(s) 105, 593, 609, 891
PspN4I GGNNCC 3 cut(s) 468, 591, 608
PspPI GGNCC 3 cut(s) 670, 688, 693
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 841
RruI TCGCGA 1 cut(s) 248
RsaI GTAC 4 cut(s) 296, 326, 608, 638
RsaNI GTAC 4 cut(s) 295, 325, 607, 637
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 5 cut(s) 24, 380, 528, 647, 669
Sau3AI GATC 6 cut(s) 39, 58, 187, 201, 888, 936
Sau96I GGNCC 3 cut(s) 670, 688, 693
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 4 cut(s) 107, 595, 611, 893
SduI GDGCHC 2 cut(s) 54, 632
SexAI ACCWGGT 1 cut(s) 609
SfaNI GCATC 2 cut(s) 405, 424
SfcI CTRYAG 1 cut(s) 842
SfiI GGCCNNNNNGGCC 1 cut(s) 455
SfoI GGCGCC 1 cut(s) 591
SinI GGWCC 1 cut(s) 688
Sse9I AATT 2 cut(s) 221, 314
SsiI CCGC 9 cut(s) 5, 23, 488, 527, 560, 572, 668, 759, 926
SspDI GGCGCC 1 cut(s) 589
SspMI CTAG 1 cut(s) 978
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 4 cut(s) 105, 593, 609, 891
StyI CCWWGG 2 cut(s) 75, 696
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 5 cut(s) 129, 204, 219, 878, 939
TaqII GACCGA 1 cut(s) 159
TasI AATT 2 cut(s) 221, 314
TatI WGTACW 2 cut(s) 294, 636
TauI GCSGC 3 cut(s) 26, 530, 671
TfiI GAWTC 3 cut(s) 131, 147, 832
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 842
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 379, 646
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 896
TspGWI ACGGA 2 cut(s) 199, 314
TspRI CASTG 1 cut(s) 842
Van91I CCANNNNNTGG 3 cut(s) 76, 406, 898
VpaK11BI GGWCC 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.