Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016267

Physical Location & Seq

Genomic Coordinates Reverse (-)

60748177 .. 60750186

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGGTGGCGACAATCGGAGCGGCGTCCCTCGCTCCGATCTTCCAAGAGCTCTGCGATCAAGTCACCCAATCCATGGAGAAGAACGCAAGGCTCAAAACCCTCCTGGGATTTTTCCAGTCCACGCTCAATTCCTTCAGAGACCGAATCATCCAGCCCGTTCAAGAAGGCCAGCAGATTTTCCACGATCAAGACGACAAGATCGAGTCCGTCGTCGTCGAATTGCAGAAGGGAGCGAAGCTAATCGCGAAGGTCTCCAAGCTCCGGTCTTGGAGCTATTTCTGGCTGGACGAGTACACGGAGAAGCTTCTGGAATTGGATAGGTACTTCAGGCGTCTGCTGGAGACGACTTGGGTTAGGGAGTTTAGGGTTGTGAGGCAGCAGAATAGGGATGTCAACCACCTGATGGATGGGATGCTTCGGAGAATGTTTGATGCTTATAAGAAGGCCGTGGAGGCCGAAACGGTGCCGTTGAGGACAGAGACGGCGGAGGCGGCGGCGGAGGAGGAGGTGAGGGGGAGTGGTGAAGAGGAAGAGGCGGCGCTGGTTGTGTTTCGGAGGTTGTTTGAGGCGGTGAGAGAGGCGGAGGAGAAGAACGAGGCGCCCAGGATGGTTAGGTACCTGGTTTCGGATATAGAGAGCACATTGTACTCGTTGCAGCCGTTTTTGGAGGAGATGGCGGCCCACAACAAGGTGTTGGACCGGCCCAGGGAGGAGGTGAGGAGTTTCAGAGTGGAGATGGAGAAGGGGGTGGAGGTGGTTCGGAGGAGCGGTGGGGTTGGTAAGAAGTGGGAGGGATACAGCAAGAAGAAATATGAGTGTATTGATGGGCTGTTGGGGCTGAATCAGTGTCTGCAGAGACAGGTGTGTATTCTGAGATGGCAGATGGCCAAGAATGCGATCCAGGCATTGGATTTGGTGAGGAAAATGGAGAGGGCGGTGAATGAGATCGAAAGCAATGTGGGAGTGCTGGAGCAAGCTGGAGTTGCTAGCACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

38.43

Weight (kDa)

5.75

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 117	1.3e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	184 - 297	3.5e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27320
rosa_chinensis	RchiOBHm_Chr6g0296131 RchiOBHm_Chr6g0296141
rosa_laevigata	RLG00000011724
rosa_multiflora	Rmu_co8158884.1_g000001 Rmu_sc0000486.1_g000005 Rmu_sc0003139.1_g000049
rosa_roxburghii	Rroxscaffold_7G00171800 Rroxscaffold_7G00178250
rosa_rugosa	Rorug06G0258700
rosa_samantha	Rh6AG371000 Rh6BG378900 Rh6CG384200 Rh6DG371400
rosa_wichuraiana	Rw6G032320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	3 cut(s)	466, 601, 618
AccB7I	CCANNNNNTGG	3 cut(s)	76, 406, 910
AccBSI	CCGCTC	2 cut(s)	23, 771
AccII	CGCG	1 cut(s)	248
AclWI	GGATC	1 cut(s)	895
AcoI	YGGCCR	1 cut(s)	888
AcuI	CTGAAG	2 cut(s)	121, 313
AcyI	GRCGYC	3 cut(s)	26, 334, 602
AfaI	GTAC	4 cut(s)	296, 326, 620, 650
AfiI	CCNNNNNNNGG	7 cut(s)	76, 264, 406, 628, 691, 709, 910
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	5 cut(s)	105, 605, 621, 707, 903
AluBI	AGCT	6 cut(s)	52, 241, 262, 276, 307, 980
AluI	AGCT	6 cut(s)	52, 241, 262, 276, 307, 980
Alw21I	GWGCWC	2 cut(s)	54, 644
Alw26I	GTCTC	5 cut(s)	135, 259, 338, 476, 853
AlwI	GGATC	1 cut(s)	895
AlwNI	CAGNNNCTG	1 cut(s)	853
AoxI	GGCC	6 cut(s)	169, 447, 456, 681, 704, 888
ApeKI	GCWGC	2 cut(s)	379, 658
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	544, 604
AspS9I	GGNCC	3 cut(s)	682, 700, 705
AsuHPI	GGTGA	7 cut(s)	58, 523, 536, 586, 730, 931, 952
AsuNHI	GCTAGC	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	3 cut(s)	466, 601, 618
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	54, 644
BbvI	GCAGC	2 cut(s)	391, 670
BccI	CCATC	8 cut(s)	400, 404, 604, 670, 733, 821, 873, 880
BceAI	ACGGC	4 cut(s)	434, 454, 501, 646
BciT130I	CCWGG	5 cut(s)	107, 607, 623, 709, 905
BciVI	GTATCC	1 cut(s)	791
BcoDI	GTCTC	5 cut(s)	135, 259, 338, 476, 853
BfaI	CTAG	1 cut(s)	990
BfmI	CTRYAG	1 cut(s)	854
BfoI	RGCGCY	2 cut(s)	545, 605
BfuI	GTATCC	1 cut(s)	791
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	7 cut(s)	24, 380, 495, 498, 540, 659, 681
BlsI	GCNGC	7 cut(s)	25, 381, 496, 499, 541, 660, 682
Bme1390I	CCNGG	5 cut(s)	107, 607, 623, 709, 905
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	3 cut(s)	682, 700, 705
BmiI	GGNNCC	3 cut(s)	468, 603, 620
BmrFI	CCNGG	5 cut(s)	107, 607, 623, 709, 905
BmsI	GCATC	2 cut(s)	405, 424
BmtI	GCTAGC	1 cut(s)	993
BpmI	CTGGAG	3 cut(s)	362, 992, 1002
BsaHI	GRCGYC	3 cut(s)	26, 334, 602
BsaI	GGTCTC	2 cut(s)	135, 259
BsaJI	CCNNGG	6 cut(s)	75, 106, 450, 605, 707, 708
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	757, 787
Bsc4I	CCNNNNNNNGG	7 cut(s)	76, 264, 406, 628, 691, 709, 910
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	964
BseBI	CCWGG	5 cut(s)	107, 607, 623, 709, 905
BseDI	CCNNGG	6 cut(s)	75, 106, 450, 605, 707, 708
BseGI	GGATG	5 cut(s)	150, 397, 415, 420, 615
BseLI	CCNNNNNNNGG	7 cut(s)	76, 264, 406, 628, 691, 709, 910
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	1 cut(s)	866
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	7 cut(s)	518, 521, 602, 686, 728, 736, 781
BseXI	GCAGC	2 cut(s)	391, 670
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	6 cut(s)	171, 449, 458, 683, 706, 890
BshNI	GGYRCC	3 cut(s)	466, 601, 618
BsiHKAI	GWGCWC	2 cut(s)	54, 644
BsiSI	CCGG	2 cut(s)	265, 703
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	7 cut(s)	76, 264, 406, 628, 691, 709, 910
BsmAI	GTCTC	5 cut(s)	135, 259, 338, 476, 853
BsmBI	CGTCTC	2 cut(s)	338, 476
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	6 cut(s)	171, 449, 458, 683, 706, 890
Bso31I	GGTCTC	2 cut(s)	135, 259
Bsp1286I	GDGCHC	2 cut(s)	54, 644
Bsp143I	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
Bsp19I	CCATGG	1 cut(s)	75
Bsp68I	TCGCGA	1 cut(s)	248
BspANI	GGCC	6 cut(s)	171, 449, 458, 683, 706, 890
BspCNI	CTCAG	1 cut(s)	867
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	468, 603, 620
BspMAI	CTGCAG	1 cut(s)	858
BspOI	GCTAGC	1 cut(s)	993
BspPI	GGATC	1 cut(s)	895
BspT107I	GGYRCC	3 cut(s)	466, 601, 618
BspTNI	GGTCTC	2 cut(s)	135, 259
BsrBI	CCGCTC	2 cut(s)	23, 771
BsrDI	GCAATG	1 cut(s)	964
BsrFI	RCCGGY	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	6 cut(s)	75, 106, 450, 605, 707, 708
BssMI	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
BssNI	GRCGYC	3 cut(s)	26, 334, 602
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	5 cut(s)	107, 607, 623, 709, 905
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	522, 528
BstACI	GRCGYC	3 cut(s)	26, 334, 602
BstC8I	GCNNGC	3 cut(s)	173, 978, 991
BstDEI	CTNAG	1 cut(s)	875
BstDSI	CCRYGG	2 cut(s)	75, 450
BstF5I	GGATG	5 cut(s)	150, 397, 415, 420, 615
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	545, 605
BstHHI	GCGC	2 cut(s)	544, 604
BstKTI	GATC	6 cut(s)	42, 61, 190, 204, 903, 951
BstMAI	GTCTC	5 cut(s)	135, 259, 338, 476, 853
BstMBI	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 455, 494, 838, 896, 905, 986
BstNI	CCWGG	5 cut(s)	107, 607, 623, 709, 905
BstSCI	CCNGG	5 cut(s)	105, 605, 621, 707, 903
BstSFI	CTRYAG	1 cut(s)	854
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	391, 670
BsuI	GTATCC	1 cut(s)	791
BsuRI	GGCC	6 cut(s)	171, 449, 458, 683, 706, 890
BtgI	CCRYGG	2 cut(s)	75, 450
BtsCI	GGATG	5 cut(s)	150, 397, 415, 420, 615
BtsIMutI	CAGTG	1 cut(s)	854
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	173, 978, 991
CaiI	CAGNNNCTG	1 cut(s)	853
CfoI	GCGC	2 cut(s)	544, 604
Cfr10I	RCCGGY	1 cut(s)	702
Cfr13I	GGNCC	3 cut(s)	682, 700, 705
CseI	GACGC	2 cut(s)	15, 323
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	4 cut(s)	295, 325, 619, 649
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	4 cut(s)	295, 325, 619, 649
DdeI	CTNAG	1 cut(s)	875
DinI	GGCGCC	1 cut(s)	603
DpnI	GATC	6 cut(s)	41, 60, 189, 203, 902, 950
DpnII	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	2 cut(s)	522, 528
EarI	CTCTTC	2 cut(s)	522, 528
EciI	GGCGGA	3 cut(s)	503, 515, 599
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	135, 259
Eco47I	GGWCC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	121, 313
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	5 cut(s)	105, 605, 621, 707, 903
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	603
EheI	GGCGCC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	338, 476
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	77, 441, 635, 816
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	7 cut(s)	24, 380, 495, 498, 540, 659, 681
FokI	GGATG	5 cut(s)	137, 404, 422, 427, 622
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	7 cut(s)	24, 380, 495, 498, 540, 659, 681
FspBI	CTAG	1 cut(s)	990
GlaI	GCGC	2 cut(s)	543, 603
GluI	GCNGC	7 cut(s)	24, 380, 495, 498, 540, 659, 681
GsuI	CTGGAG	3 cut(s)	362, 992, 1002
HaeII	RGCGCY	2 cut(s)	545, 605
HaeIII	GGCC	6 cut(s)	171, 449, 458, 683, 706, 890
HapII	CCGG	2 cut(s)	265, 703
HgaI	GACGC	2 cut(s)	15, 323
HhaI	GCGC	2 cut(s)	544, 604
Hin1I	GRCGYC	3 cut(s)	26, 334, 602
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	542, 602
HinP1I	GCGC	2 cut(s)	542, 602
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	147, 206, 844
HpaII	CCGG	2 cut(s)	265, 703
HphI	GGTGA	7 cut(s)	58, 523, 536, 586, 730, 931, 952
Hpy166II	GTNNAC	3 cut(s)	123, 297, 397
Hpy188I	TCNGA	9 cut(s)	20, 39, 140, 423, 558, 631, 731, 765, 876
Hpy188III	TCNNGA	4 cut(s)	164, 191, 247, 311
Hpy8I	GTNNAC	3 cut(s)	123, 297, 397
Hpy99I	CGWCG	3 cut(s)	215, 218, 221
HpyAV	CCTTC	6 cut(s)	145, 161, 223, 244, 439, 739
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	226, 658, 856
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 455, 494, 838, 896, 905, 986
HpyF3I	CTNAG	1 cut(s)	875
Hsp92I	GRCGYC	3 cut(s)	26, 334, 602
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	542, 602
KasI	GGCGCC	1 cut(s)	601
KpnI	GGTACC	1 cut(s)	622
Kzo9I	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
LmnI	GCTCC	7 cut(s)	20, 40, 233, 267, 273, 768, 973
Lsp1109I	GCAGC	2 cut(s)	391, 670
LweI	GCATC	2 cut(s)	405, 424
MabI	ACCWGGT	1 cut(s)	621
MaeI	CTAG	1 cut(s)	990
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	6 cut(s)	41, 60, 189, 203, 902, 950
MbiI	CCGCTC	2 cut(s)	23, 771
MboI	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
MboII	GAAGA	6 cut(s)	34, 94, 539, 545, 604, 820
MhlI	GDGCHC	2 cut(s)	54, 644
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	3 cut(s)	130, 221, 314
MluNI	TGGCCA	1 cut(s)	890
Mly113I	GGCGCC	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	678
Mox20I	TGGCCA	1 cut(s)	890
MscI	TGGCCA	1 cut(s)	890
Msp20I	TGGCCA	1 cut(s)	890
MspI	CCGG	2 cut(s)	265, 703
MspR9I	CCNGG	5 cut(s)	107, 607, 623, 709, 905
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	5 cut(s)	107, 607, 623, 709, 905
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	7 cut(s)	32, 455, 494, 838, 896, 905, 986
NarI	GGCGCC	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
NheI	GCTAGC	1 cut(s)	989
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	468, 603, 620
NmuCI	GTSAC	1 cut(s)	64
NruI	TCGCGA	1 cut(s)	248
PasI	CCCWGGG	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	4 cut(s)	192, 201, 210, 659
PctI	GAATGC	1 cut(s)	901
PfeI	GAWTC	2 cut(s)	147, 844
PflMI	CCANNNNNTGG	3 cut(s)	76, 406, 910
PkrI	GCNGC	7 cut(s)	25, 381, 496, 499, 541, 660, 682
PleI	GAGTC	1 cut(s)	214
PluTI	GGCGCC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	5 cut(s)	105, 605, 621, 707, 903
PspGI	CCWGG	5 cut(s)	105, 605, 621, 707, 903
PspN4I	GGNNCC	3 cut(s)	468, 603, 620
PspPI	GGNCC	3 cut(s)	682, 700, 705
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	1 cut(s)	853
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	4 cut(s)	296, 326, 620, 650
RsaNI	GTAC	4 cut(s)	295, 325, 619, 649
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	7 cut(s)	24, 380, 495, 498, 540, 659, 681
Sau3AI	GATC	6 cut(s)	39, 58, 187, 201, 900, 948
Sau96I	GGNCC	3 cut(s)	682, 700, 705
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	5 cut(s)	107, 607, 623, 709, 905
SduI	GDGCHC	2 cut(s)	54, 644
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	405, 424
SfcI	CTRYAG	1 cut(s)	854
SfiI	GGCCNNNNNGGCC	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	603
SinI	GGWCC	1 cut(s)	700
Sse9I	AATT	3 cut(s)	130, 221, 314
SspDI	GGCGCC	1 cut(s)	601
SspMI	CTAG	1 cut(s)	990
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	5 cut(s)	105, 605, 621, 707, 903
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	204, 219, 951
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	130, 221, 314
TatI	WGTACW	2 cut(s)	294, 648
TauI	GCSGC	5 cut(s)	26, 497, 500, 542, 683
TfiI	GAWTC	2 cut(s)	147, 844
TscAI	CASTG	1 cut(s)	854
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	379, 658
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	199, 314
TspRI	CASTG	1 cut(s)	854
Van91I	CCANNNNNTGG	3 cut(s)	76, 406, 910
VpaK11BI	GGWCC	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.