Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010338

Physical Location & Seq

Genomic Coordinates Reverse (-)

22032564 .. 22034717

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGTTATACCACCACCCATATTCAATAGATAGCCAAAGGGTGAGACTTGCTTTGGAAGAAAAAGGCATTGATTACACATCATTCCATCTCAATCCTGTAACCGGCAAGAATATGAATGCCTCATTCTTCAGAATGAATCCAAGTGCAACACTCCCGGTTTTCCAGAACGGCGAACACAAGATTTTCAATACAATCGAGATTATTCAGTATGTAGAAAGAATTGCAAGTGTCTCTACAGGCGCTGAGAACATGACCTTCAGTGGCAGAGAAGTCACTGGATGGATGCACAGAATACAACAATGGAACCCCAAGTATTTCACACTAGCCCACATCCCGGAAAAGTACTTCCGTTCTGTCTCCAAATTCTTGAGGCGGGTGGTGATGGCTCGAATGGAGGAATCTCCTGATTTAGCAGGTGCTTATCACAGTAAGTTGCAAGAAGTATATGACACAGAAGACAAGTTGAAAAACTCAAGCGTTATGATACAAGACAAGGAACATCTAATAAGACTTCTAGATGAAGTTGAGAAACAGCTAAATGAAACAACATATTTAGTAGGGGATGAGTTTACAATGGCAGATGTGATGCTCATTCCGGTGCTAGCACGGTTGGTGCTCTTGGATTTGGAGGACGAGTATATAGGTAGCCGGCCAAACATTGCTAAATACTGGATTATGGTGCAGCAGAGGCCTAGTTATAAGAAAGTGATTGCAAGTCATTTCAATGGCTGGAGGAAGTACAGAACTTTGTGGAAAACCTGGTGCTCTATTCACATCAGAAGCATTCTAAGGAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0043603 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N_3

Protein Analysis

268

Amino Acids

31.53

Weight (kDa)

9.13

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	8.9e-12	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	3 - 76	6.9e-10	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	12 - 74	1.6e-09	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	148 - 240	6.5e-09	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	166 - 223	2.3e-09	Glutathione S-transferase, C-terminal domain
GST_C	PF00043	167 - 232	4e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77290 AT1G77290 AT1G77290
fragaria_vesca	FvH4_2g27900
malus_domestica	MD08G1159700.v1.1 MD15G1133600.v1.1
prunus_persica	Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1
pyrus_communis	pycom15g12040
rosa_chinensis	RchiOBHm_Chr6g0296751
rosa_laevigata	RLG00000011662
rosa_multiflora	Rmu_ssc0000192.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171200
rosa_rugosa	Rorug06G0265500 Rorug06G0265600
rosa_samantha	Rh6AG376600 Rh6BG384900 Rh6CG390300 Rh6DG377400
rosa_wichuraiana	Rw6G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AciI	CCGC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	2 cut(s)	115, 244
AfaI	GTAC	2 cut(s)	347, 743
AfiI	CCNNNNNNNGG	2 cut(s)	104, 337
AgsI	TTSAA	4 cut(s)	27, 190, 469, 727
AjnI	CCWGG	1 cut(s)	761
AluBI	AGCT	1 cut(s)	538
AluI	AGCT	1 cut(s)	538
Alw21I	GWGCWC	2 cut(s)	621, 770
Alw26I	GTCTC	3 cut(s)	40, 238, 364
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	653, 692
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	158, 338
AsuHPI	GGTGA	2 cut(s)	55, 394
AsuNHI	GCTAGC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	621, 770
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	3 cut(s)	96, 276, 379
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	158, 338
BcoDI	GTCTC	3 cut(s)	40, 238, 364
BfaI	CTAG	4 cut(s)	326, 518, 605, 696
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	3 cut(s)	158, 338, 763
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	3 cut(s)	158, 338, 763
BmsI	GCATC	2 cut(s)	276, 579
BmtI	GCTAGC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	754
BpuEI	CTTGAG	2 cut(s)	391, 460
BpuMI	CCSGG	2 cut(s)	158, 338
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 337
Bse118I	RCCGGY	2 cut(s)	104, 651
Bse1I	ACTGG	2 cut(s)	283, 677
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	763
BseGI	GGATG	4 cut(s)	287, 291, 333, 571
BseLI	CCNNNNNNNGG	2 cut(s)	104, 337
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	283, 677
BseXI	GCAGC	1 cut(s)	697
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	2 cut(s)	655, 694
BsiHKAI	GWGCWC	2 cut(s)	621, 770
BsiSI	CCGG	5 cut(s)	105, 158, 338, 599, 652
BslI	CCNNNNNNNGG	2 cut(s)	104, 337
BsmAI	GTCTC	3 cut(s)	40, 238, 364
BsmI	GAATGC	2 cut(s)	124, 786
BsnI	GGCC	2 cut(s)	655, 694
Bsp1286I	GDGCHC	2 cut(s)	621, 770
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	655, 694
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	407
BspOI	GCTAGC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	104, 651
BsrI	ACTGG	2 cut(s)	283, 677
BssAI	RCCGGY	2 cut(s)	104, 651
Bst2UI	CCWGG	1 cut(s)	763
Bst4CI	ACNGT	2 cut(s)	431, 612
BstC8I	GCNNGC	2 cut(s)	606, 653
BstDEI	CTNAG	2 cut(s)	246, 791
BstF5I	GGATG	4 cut(s)	287, 291, 333, 571
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMAI	GTCTC	3 cut(s)	40, 238, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	691
BstNI	CCWGG	1 cut(s)	763
BstSCI	CCNGG	3 cut(s)	156, 336, 761
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	655, 694
BtsCI	GGATG	4 cut(s)	287, 291, 333, 571
BtsIMutI	CAGTG	2 cut(s)	268, 276
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	606, 653
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	2 cut(s)	104, 651
CsiI	ACCWGGT	1 cut(s)	761
Csp6I	GTAC	2 cut(s)	346, 742
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	8 cut(s)	36, 329, 389, 538, 651, 655, 694, 732
CviKI_1	RGCY	8 cut(s)	36, 329, 389, 538, 651, 655, 694, 732
CviQI	GTAC	2 cut(s)	346, 742
DdeI	CTNAG	2 cut(s)	246, 791
EaeI	YGGCCR	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	115, 244
EcoRII	CCWGG	1 cut(s)	761
FaeI	CATG	1 cut(s)	256
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	4 cut(s)	294, 298, 320, 578
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	4 cut(s)	326, 518, 605, 696
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	754
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	655, 694
HapII	CCGG	5 cut(s)	105, 158, 338, 599, 652
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	139, 401, 798
HpaII	CCGG	5 cut(s)	105, 158, 338, 599, 652
HphI	GGTGA	2 cut(s)	55, 394
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	3 cut(s)	134, 782, 803
Hpy188III	TCNNGA	5 cut(s)	166, 199, 370, 407, 518
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	431, 612
HpyCH4V	TGCA	7 cut(s)	4, 149, 227, 289, 439, 685, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	691
HpyF3I	CTNAG	2 cut(s)	246, 791
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	2 cut(s)	276, 579
MabI	ACCWGGT	1 cut(s)	761
MaeI	CTAG	4 cut(s)	326, 518, 605, 696
MaeIII	GTNAC	2 cut(s)	100, 274
MboII	GAAGA	3 cut(s)	71, 121, 470
MhlI	GDGCHC	2 cut(s)	621, 770
MluCI	AATT	2 cut(s)	222, 365
MnlI	CCTC	6 cut(s)	133, 366, 391, 625, 684, 729
MroNI	GCCGGC	1 cut(s)	651
MslI	CAYNNNNRTG	2 cut(s)	599, 726
MspI	CCGG	5 cut(s)	105, 158, 338, 599, 652
MspR9I	CCNGG	3 cut(s)	158, 338, 763
Mva1269I	GAATGC	2 cut(s)	124, 786
MvaI	CCWGG	1 cut(s)	763
MwoI	GCNNNNNNNGC	1 cut(s)	691
NaeI	GCCGGC	1 cut(s)	653
NciI	CCSGG	2 cut(s)	158, 338
NgoMIV	GCCGGC	1 cut(s)	651
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	694
PctI	GAATGC	2 cut(s)	124, 786
PdiI	GCCGGC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	139, 401, 798
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	761
PspN4I	GGNNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	347, 743
RsaNI	GTAC	2 cut(s)	346, 742
RseI	CAYNNNNRTG	2 cut(s)	599, 726
SatI	GCNGC	1 cut(s)	686
ScaI	AGTACT	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	158, 338, 763
SduI	GDGCHC	2 cut(s)	621, 770
SetI	ASST	5 cut(s)	260, 421, 540, 649, 764
SexAI	ACCWGGT	1 cut(s)	761
SfaNI	GCATC	2 cut(s)	276, 579
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	599, 726
SmlI	CTYRAG	2 cut(s)	370, 475
SmoI	CTYRAG	2 cut(s)	370, 475
Sse9I	AATT	2 cut(s)	222, 365
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	4 cut(s)	326, 518, 605, 696
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	3 cut(s)	156, 336, 761
TaaI	ACNGT	2 cut(s)	431, 612
TaqI	TCGA	2 cut(s)	198, 391
TasI	AATT	2 cut(s)	222, 365
TatI	WGTACW	2 cut(s)	345, 741
TfiI	GAWTC	3 cut(s)	139, 401, 798
TscAI	CASTG	2 cut(s)	268, 283
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	4 cut(s)	131, 152, 537, 558
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	268, 283
XapI	RAATTY	1 cut(s)	365
XbaI	TCTAGA	1 cut(s)	517
XspI	CTAG	4 cut(s)	326, 518, 605, 696
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.