Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010338

Physical Location & Seq

Genomic Coordinates Reverse (-)

18373021 .. 18373547

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1159700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCACTTATATCACCATCCGTACTCATGGGACAGCCAAAGAGTGAGGCTTGCTTTGGAGGAAAAAGGCATTGGTTACACATCCTTCCATGTCAATCCTGTGGCGGGCAAGAACATGTATGCTTCATTCTTCAGGATGAATCGGAGCGCAAAACTTCTGGTTTTCCAGAACGGGCACCGTATTATTTACAACACCATCGAGATCATTCAGTATGTGGAAAGAATTTGGCTTGTCTCATCAGGGGAAGAGAACATCGCTTCAAGTGGCGGAGAAGTGGCCGCGTGGATGCACAGAATAAAACAATGGAACCCGAACTTCTTTACGCTTTCTCACATCCCAAAGAGGCACCGCGATTATAGCTTGAATGGCGGAAGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0043603 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N_3

Protein Analysis

127

Amino Acids

14.71

Weight (kDa)

9.56

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	4.1e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	3 - 74	2.1e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77290 AT1G77290 AT1G77290
fragaria_vesca	FvH4_2g27900
malus_domestica	MD08G1159700.v1.1 MD15G1133600.v1.1
prunus_persica	Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1
pyrus_communis	pycom15g12040
rosa_chinensis	RchiOBHm_Chr6g0296751
rosa_laevigata	RLG00000011662
rosa_multiflora	Rmu_ssc0000192.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171200
rosa_rugosa	Rorug06G0265500 Rorug06G0265600
rosa_samantha	Rh6AG376600 Rh6BG384900 Rh6CG390300 Rh6DG377400
rosa_wichuraiana	Rw6G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	174, 345
AccII	CGCG	2 cut(s)	281, 351
AciI	CCGC	5 cut(s)	104, 267, 279, 349, 369
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	261, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	2 cut(s)	360, 375
AluI	AGCT	2 cut(s)	360, 375
Alw26I	GTCTC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	174, 345
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	24, 203
BcoDI	GTCTC	1 cut(s)	238
BisI	GCNGC	2 cut(s)	279, 376
BlsI	GCNGC	2 cut(s)	280, 377
BmiI	GGNNCC	3 cut(s)	176, 308, 347
BmsI	GCATC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseGI	GGATG	5 cut(s)	16, 80, 141, 291, 333
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	281, 351
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	2 cut(s)	174, 345
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	5 cut(s)	104, 267, 279, 349, 369
BspANI	GGCC	1 cut(s)	278
BspFNI	CGCG	2 cut(s)	281, 351
BspLI	GGNNCC	3 cut(s)	176, 308, 347
BspT107I	GGYRCC	2 cut(s)	174, 345
BssMI	GATC	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	51, 106
BstF5I	GGATG	5 cut(s)	16, 80, 141, 291, 333
BstFNI	CGCG	2 cut(s)	281, 351
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 366, 375
BstNSI	RCATGY	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	2 cut(s)	281, 351
BstV1I	GCAGC	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	5 cut(s)	16, 80, 141, 291, 333
Cac8I	GCNNGC	2 cut(s)	51, 106
CfoI	GCGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	3 cut(s)	27, 89, 115
CviJI	RGCY	6 cut(s)	36, 49, 229, 278, 360, 375
CviKI_1	RGCY	6 cut(s)	36, 49, 229, 278, 360, 375
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	115
FaeI	CATG	3 cut(s)	30, 92, 118
FaiI	YATR	7 cut(s)	10, 28, 90, 116, 120, 213, 357
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	26, 88, 114
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	279, 376
FokI	GGATG	5 cut(s)	3, 67, 148, 298, 320
Fsp4HI	GCNGC	2 cut(s)	279, 376
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	279, 376
HaeIII	GGCC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	30, 92, 118
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	133, 166, 199
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	4, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 366, 375
Hsp92II	CATG	3 cut(s)	30, 92, 118
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	111, 118, 143, 179, 225
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	2 cut(s)	121, 257
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	3 cut(s)	39, 52, 336
MvnI	CGCG	2 cut(s)	281, 351
MwoI	GCNNNNNNNGC	3 cut(s)	357, 366, 375
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	3 cut(s)	30, 92, 118
NlaIV	GGNNCC	3 cut(s)	176, 308, 347
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	280, 377
PscI	ACATGT	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	176, 308, 347
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	2 cut(s)	279, 376
Sau3AI	GATC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	2 cut(s)	362, 377
SfaNI	GCATC	1 cut(s)	276
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	5 cut(s)	104, 267, 279, 349, 369
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	375
TspDTI	ATGAA	2 cut(s)	114, 152
TspGWI	ACGGA	1 cut(s)	9
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.