Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010338

Physical Location & Seq

Genomic Coordinates Forward (+)

8191500 .. 8192547

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGTTATATCACCATCCTTACTCATTGGATAGCCAGAGAGTGAGACTTGCCTTGGAGGAAAAAGGCATTGATTACACATCATTCCATGTCAATCCCGTGACGGTCAAGAACATGGATGCCTCATTCTTCAGGAGGAATCCGAGTGCAAAACTCCCGGTTTTCCAGAACGGGCACCATATCATTTACAACACCATTGAGATCATTCAGTATGTGGAAAGAATTGCACTAGTCTCATCAGGGAAAGAGAACATCCCTTCCAGTGGCGGAGAAGTGACTGCATGGATGCACAGAATAAAACAATGGAACCCCAAGTTCTTTACGCTTTCTCACATCCCAAAGAAGCACCGCGATTATGTCTCTAAGTTCATAAGGCAGGTGATTATTGCTCGAATGGCGGATGCTACTGATCTAGCTGCTGCTTATCACGCCAAGTTAGTCCAAGTGTACGAGACAGAAGACAAGTTAAAAGACCCCGCGGTTTTGAAACAGAGCAAGGAACAGTTAATAAGACTTCTTGATCAAGTCGAAAAAAAGCTGAATGAATCGGCTTATTTGGCCGGGGAAGAGTTTAGCATGGCGGATGTGATGCTCGTTCCTGTGCTGGCACGGCTAGTGCTCTTGAATTTGAAGGAAGAGTATATAGATAGCCGGCCGAACACGGCTAAATACTGGATTATGGTGCAGCAGAGGCCTAGTTATAAGAAGGTGATTGGGAAGTACTTCAGTGGCTGGAGGAAGCACAAAACGTTTATTAGAACTTGGTGTTTTGTTCACATCAGAACCATTCTAAGGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0043603 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N_3

Protein Analysis

268

Amino Acids

31.35

Weight (kDa)

9.75

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77290 AT1G77290 AT1G77290
fragaria_vesca	FvH4_2g27900
malus_domestica	MD08G1159700.v1.1 MD15G1133600.v1.1
prunus_persica	Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1
pyrus_communis	pycom15g12040
rosa_chinensis	RchiOBHm_Chr6g0296751
rosa_laevigata	RLG00000011662
rosa_multiflora	Rmu_ssc0000192.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171200
rosa_rugosa	Rorug06G0265500 Rorug06G0265600
rosa_samantha	Rh6AG376600 Rh6BG384900 Rh6CG390300 Rh6DG377400
rosa_wichuraiana	Rw6G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	174
AccII	CGCG	2 cut(s)	351, 479
AciI	CCGC	6 cut(s)	267, 349, 398, 477, 479, 581
AclI	AACGTT	1 cut(s)	749
AcoI	YGGCCR	2 cut(s)	558, 653
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	2 cut(s)	115, 709
AfaI	GTAC	2 cut(s)	449, 722
AfiI	CCNNNNNNNGG	2 cut(s)	263, 792
AgsI	TTSAA	3 cut(s)	487, 625, 631
AhlI	ACTAGT	1 cut(s)	229
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	416, 538
AluI	AGCT	2 cut(s)	416, 538
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	4 cut(s)	40, 238, 364, 446
AlwNI	CAGNNNCTG	1 cut(s)	732
AoxI	GGCC	3 cut(s)	558, 653, 692
ApeKI	GCWGC	3 cut(s)	416, 419, 685
ApoI	RAATTY	1 cut(s)	625
Asp700I	GAANNNNTTC	1 cut(s)	722
AsuC2I	CCSGG	2 cut(s)	158, 562
AsuHPI	GGTGA	3 cut(s)	5, 391, 721
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	403, 406, 697
BccI	CCATC	1 cut(s)	24
BceAI	ACGGC	2 cut(s)	626, 678
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	158, 562
BcoDI	GTCTC	4 cut(s)	40, 238, 364, 446
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	4 cut(s)	230, 413, 614, 696
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	417, 420, 686
BlsI	GCNGC	3 cut(s)	418, 421, 687
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	2 cut(s)	158, 562
BmiI	GGNNCC	2 cut(s)	176, 308
BmrFI	CCNGG	2 cut(s)	158, 562
BmsI	GCATC	4 cut(s)	109, 276, 391, 579
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	754
BpuMI	CCSGG	2 cut(s)	158, 562
BsaJI	CCNNGG	3 cut(s)	54, 477, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 792
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	2 cut(s)	261, 677
BseDI	CCNNGG	3 cut(s)	54, 477, 561
BseGI	GGATG	7 cut(s)	16, 124, 252, 291, 333, 406, 589
BseLI	CCNNNNNNNGG	2 cut(s)	263, 792
BseNI	ACTGG	2 cut(s)	261, 677
BseSI	GKGCMC	1 cut(s)	177
BseX3I	CGGCCG	1 cut(s)	653
BseXI	GCAGC	3 cut(s)	403, 406, 697
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	2 cut(s)	351, 479
Bsh1285I	CGRYCG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	560, 655, 694
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	158, 561, 652
BslI	CCNNNNNNNGG	2 cut(s)	263, 792
BsmAI	GTCTC	4 cut(s)	40, 238, 364, 446
BsnI	GGCC	3 cut(s)	560, 655, 694
Bsp1286I	GDGCHC	2 cut(s)	177, 621
Bsp143I	GATC	3 cut(s)	201, 409, 520
BspACI	CCGC	6 cut(s)	267, 349, 398, 477, 479, 581
BspANI	GGCC	3 cut(s)	560, 655, 694
BspFNI	CGCG	2 cut(s)	351, 479
BspLI	GGNNCC	2 cut(s)	176, 308
BspMI	ACCTGC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	261, 677
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	3 cut(s)	54, 477, 561
BssMI	GATC	3 cut(s)	201, 409, 520
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	106, 504
Bst6I	CTCTTC	2 cut(s)	561, 630
BstC8I	GCNNGC	2 cut(s)	606, 653
BstDEI	CTNAG	2 cut(s)	363, 791
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	7 cut(s)	16, 124, 252, 291, 333, 406, 589
BstFNI	CGCG	2 cut(s)	351, 479
BstKTI	GATC	3 cut(s)	204, 412, 523
BstMAI	GTCTC	4 cut(s)	40, 238, 364, 446
BstMBI	GATC	3 cut(s)	201, 409, 520
BstMCI	CGRYCG	1 cut(s)	656
BstMWI	GCNNNNNNNGC	5 cut(s)	395, 428, 557, 610, 691
BstSCI	CCNGG	2 cut(s)	156, 560
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	2 cut(s)	351, 479
BstV1I	GCAGC	3 cut(s)	403, 406, 697
BstV2I	GAAGAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	560, 655, 694
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	7 cut(s)	16, 124, 252, 291, 333, 406, 589
BtsIMutI	CAGTG	2 cut(s)	268, 733
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	606, 653
CaiI	CAGNNNCTG	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	651
Cfr42I	CCGCGG	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	448, 721
CviAII	CATG	4 cut(s)	89, 115, 282, 577
CviQI	GTAC	2 cut(s)	448, 721
DdeI	CTNAG	2 cut(s)	363, 791
DpnI	GATC	3 cut(s)	203, 411, 522
DpnII	GATC	3 cut(s)	201, 409, 520
EaeI	YGGCCR	2 cut(s)	558, 653
EagI	CGGCCG	1 cut(s)	653
Eam1104I	CTCTTC	2 cut(s)	561, 630
EarI	CTCTTC	2 cut(s)	561, 630
EciI	GGCGGA	3 cut(s)	282, 413, 596
EclXI	CGGCCG	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	694
Eco52I	CGGCCG	1 cut(s)	653
Eco57I	CTGAAG	2 cut(s)	115, 709
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	4 cut(s)	92, 118, 285, 580
FatI	CATG	4 cut(s)	88, 114, 281, 576
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	417, 420, 686
FokI	GGATG	7 cut(s)	3, 131, 239, 298, 320, 413, 596
Fsp4HI	GCNGC	3 cut(s)	417, 420, 686
FspBI	CTAG	4 cut(s)	230, 413, 614, 696
GluI	GCNGC	3 cut(s)	417, 420, 686
GsuI	CTGGAG	1 cut(s)	754
HaeIII	GGCC	3 cut(s)	560, 655, 694
HapII	CCGG	3 cut(s)	158, 561, 652
Hin1II	CATG	4 cut(s)	92, 118, 285, 580
HinfI	GANTC	2 cut(s)	139, 545
HpaII	CCGG	3 cut(s)	158, 561, 652
HphI	GGTGA	3 cut(s)	5, 391, 721
Hpy166II	GTNNAC	2 cut(s)	448, 775
Hpy188I	TCNGA	2 cut(s)	144, 782
Hpy188III	TCNNGA	5 cut(s)	109, 133, 166, 518, 622
Hpy8I	GTNNAC	2 cut(s)	448, 775
HpyAV	CCTTC	3 cut(s)	267, 625, 700
HpyCH4III	ACNGT	2 cut(s)	106, 504
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	6 cut(s)	4, 149, 227, 281, 289, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	395, 428, 557, 610, 691
HpyF3I	CTNAG	2 cut(s)	363, 791
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	4 cut(s)	92, 118, 285, 580
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	520
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	201, 409, 520
Lsp1109I	GCAGC	3 cut(s)	403, 406, 697
LweI	GCATC	4 cut(s)	109, 276, 391, 579
MaeI	CTAG	4 cut(s)	230, 413, 614, 696
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	2 cut(s)	100, 274
MalI	GATC	3 cut(s)	203, 411, 522
MboI	GATC	3 cut(s)	201, 409, 520
MboII	GAAGA	4 cut(s)	121, 470, 578, 647
MhlI	GDGCHC	2 cut(s)	177, 621
MluCI	AATT	2 cut(s)	222, 625
MnlI	CCTC	5 cut(s)	52, 129, 133, 684, 729
MroNI	GCCGGC	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	2 cut(s)	467, 506
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	3 cut(s)	158, 561, 652
MspR9I	CCNGG	2 cut(s)	158, 562
MvnI	CGCG	2 cut(s)	351, 479
MwoI	GCNNNNNNNGC	5 cut(s)	395, 428, 557, 610, 691
NaeI	GCCGGC	1 cut(s)	653
NciI	CCSGG	2 cut(s)	158, 562
NdeII	GATC	3 cut(s)	201, 409, 520
NgoMIV	GCCGGC	1 cut(s)	651
NlaIII	CATG	4 cut(s)	92, 118, 285, 580
NlaIV	GGNNCC	2 cut(s)	176, 308
NmuCI	GTSAC	2 cut(s)	100, 274
PaqCI	CACCTGC	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	694
PdiI	GCCGGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	139, 545
PkrI	GCNGC	3 cut(s)	418, 421, 687
PsiI	TTATAA	1 cut(s)	702
Psp1406I	AACGTT	1 cut(s)	749
PspN4I	GGNNCC	2 cut(s)	176, 308
PstNI	CAGNNNCTG	1 cut(s)	732
RsaI	GTAC	2 cut(s)	449, 722
RsaNI	GTAC	2 cut(s)	448, 721
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	467, 506
SatI	GCNGC	3 cut(s)	417, 420, 686
Sau3AI	GATC	3 cut(s)	201, 409, 520
ScaI	AGTACT	1 cut(s)	722
ScrFI	CCNGG	2 cut(s)	158, 562
SduI	GDGCHC	2 cut(s)	177, 621
SetI	ASST	5 cut(s)	381, 418, 540, 711, 752
SfaNI	GCATC	4 cut(s)	109, 276, 391, 579
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	2 cut(s)	222, 625
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	6 cut(s)	267, 349, 398, 477, 479, 581
SspMI	CTAG	4 cut(s)	230, 413, 614, 696
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	2 cut(s)	156, 560
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	106, 504
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	2 cut(s)	391, 528
TasI	AATT	2 cut(s)	222, 625
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	139, 545
Tru1I	TTAA	2 cut(s)	467, 506
Tru9I	TTAA	2 cut(s)	467, 506
TscAI	CASTG	2 cut(s)	268, 733
TseFI	GTSAC	2 cut(s)	100, 274
TseI	GCWGC	3 cut(s)	416, 419, 685
Tsp45I	GTSAC	2 cut(s)	100, 274
TspDTI	ATGAA	2 cut(s)	358, 558
TspRI	CASTG	2 cut(s)	268, 733
XapI	RAATTY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	4 cut(s)	230, 413, 614, 696
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.