Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010338

Physical Location & Seq

Genomic Coordinates Forward (+)

11536652 .. 11538553

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGTTATACCACCACCCGTATTCAATAGATAGCCAAAGGGTGAGACTTGCTTTGGAAGAAAAAGGCATTGATTACACATCATTCCATCTCAATCCTGTAACGGGCAAGAATATGAATGCCTCATTCTTCAGAATGAATCCAAGTGCAACACTCCCGGTTTTCCAGAACGGCGACCACAAGATTTACAATACAATTGAAATTATTCAGTATGTAGAAAGAATTGCAAGTGTCTCTACAGGCGCCGAGAACATGACCTTCAGTGGCAGAGAAGTCACTGAATGGATGCACCAAATACAACAATGGAACCCCAAGTTTTTCACACTTGCCCACATCCCGGACAAGTACTTTCGTTCTGTCTCTAAATTCTTGAGGCGGGTGGTGATGGCTCGAATGGAGGAATCTCCTGATTTAGCAGGTGCTTATCATAGAAAGTTGCAAGAAGTATATGACACAGAAGACAAGTTGAAAAACTCTAGTGTTTTGATACAGGACAGAAAACATCTAATAGGACTCCTTGATGAAGTTGAAAAACAGCTAAATGAAACAAAATATTTAGCAGGGGAGGAGTTTACAATGGCAGATGTCATGCTCATTCCGGTGCTAGCACGGTTGGTGCTCTTGAATTTGGAGGACGAGTATATAGGTAGCCGGCCGAACACTGCTAAATACTGGATTATGGTGCAGCAGAGGCCTAGTTATAAGAAAGTGATTGCAAGTCATTTCAATGGCTGGAGGAAGTATAGAACTTTGTGGAAAACCTGGTGCTCTATCCACATCAGAAGCATTCTAAGGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0043603 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N_3

Protein Analysis

267

Amino Acids

31.52

Weight (kDa)

9.33

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	4.7e-11	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	3 - 76	1e-10	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	12 - 74	3.8e-10	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	150 - 240	1.4e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	166 - 210	5.1e-08	Glutathione S-transferase, C-terminal domain
GST_C	PF00043	171 - 232	3.9e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77290 AT1G77290 AT1G77290
fragaria_vesca	FvH4_2g27900
malus_domestica	MD08G1159700.v1.1 MD15G1133600.v1.1
prunus_persica	Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1
pyrus_communis	pycom15g12040
rosa_chinensis	RchiOBHm_Chr6g0296751
rosa_laevigata	RLG00000011662
rosa_multiflora	Rmu_ssc0000192.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171200
rosa_rugosa	Rorug06G0265500 Rorug06G0265600
rosa_samantha	Rh6AG376600 Rh6BG384900 Rh6CG390300 Rh6DG377400
rosa_wichuraiana	Rw6G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	365, 625
AcuI	CTGAAG	2 cut(s)	115, 244
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	104, 337
AgsI	TTSAA	6 cut(s)	27, 200, 469, 530, 625, 727
AjnI	CCWGG	1 cut(s)	761
AluBI	AGCT	1 cut(s)	538
AluI	AGCT	1 cut(s)	538
Alw21I	GWGCWC	2 cut(s)	621, 770
Alw26I	GTCTC	3 cut(s)	40, 238, 364
AoxI	GGCC	2 cut(s)	653, 692
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	2 cut(s)	365, 625
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	158, 338
AsuHPI	GGTGA	2 cut(s)	55, 394
AsuNHI	GCTAGC	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	621, 770
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	2 cut(s)	96, 379
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	158, 338
BcoDI	GTCTC	3 cut(s)	40, 238, 364
BfaI	CTAG	3 cut(s)	477, 605, 696
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	3 cut(s)	158, 338, 763
BmiI	GGNNCC	2 cut(s)	244, 308
BmrFI	CCNGG	3 cut(s)	158, 338, 763
BmsI	GCATC	1 cut(s)	276
BmtI	GCTAGC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	391
BpuMI	CCSGG	2 cut(s)	158, 338
BsaHI	GRCGYC	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 337
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	763
BseGI	GGATG	2 cut(s)	291, 333
BseLI	CCNNNNNNNGG	2 cut(s)	104, 337
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	653
BseXI	GCAGC	1 cut(s)	697
BsgI	GTGCAG	1 cut(s)	704
Bsh1285I	CGRYCG	1 cut(s)	656
BshFI	GGCC	2 cut(s)	655, 694
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	656
BsiHKAI	GWGCWC	2 cut(s)	621, 770
BsiSI	CCGG	4 cut(s)	158, 338, 599, 652
BslI	CCNNNNNNNGG	2 cut(s)	104, 337
BsmAI	GTCTC	3 cut(s)	40, 238, 364
BsmI	GAATGC	2 cut(s)	124, 786
BsnI	GGCC	2 cut(s)	655, 694
Bsp1286I	GDGCHC	2 cut(s)	621, 770
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	655, 694
BspLI	GGNNCC	2 cut(s)	244, 308
BspMI	ACCTGC	1 cut(s)	407
BspOI	GCTAGC	1 cut(s)	608
BspT107I	GGYRCC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	651
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	763
Bst4CI	ACNGT	1 cut(s)	612
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	606, 653
BstDEI	CTNAG	1 cut(s)	791
BstF5I	GGATG	2 cut(s)	291, 333
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMAI	GTCTC	3 cut(s)	40, 238, 364
BstMCI	CGRYCG	1 cut(s)	656
BstMWI	GCNNNNNNNGC	1 cut(s)	691
BstNI	CCWGG	1 cut(s)	763
BstSCI	CCNGG	3 cut(s)	156, 336, 761
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	655, 694
BtsCI	GGATG	2 cut(s)	291, 333
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	268, 276, 660
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	606, 653
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	651
CsiI	ACCWGGT	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	253, 589
CviJI	RGCY	7 cut(s)	36, 389, 538, 651, 655, 694, 732
CviKI_1	RGCY	7 cut(s)	36, 389, 538, 651, 655, 694, 732
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	791
DinI	GGCGCC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	653
EagI	CGGCCG	1 cut(s)	653
EclXI	CGGCCG	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	694
Eco52I	CGGCCG	1 cut(s)	653
Eco57I	CTGAAG	2 cut(s)	115, 244
EcoRII	CCWGG	1 cut(s)	761
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaeI	CATG	2 cut(s)	256, 592
FatI	CATG	2 cut(s)	252, 588
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	2 cut(s)	298, 320
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	3 cut(s)	477, 605, 696
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	754
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	655, 694
HapII	CCGG	4 cut(s)	158, 338, 599, 652
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	256, 592
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	139, 401, 513
HpaII	CCGG	4 cut(s)	158, 338, 599, 652
HphI	GGTGA	2 cut(s)	55, 394
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	2 cut(s)	134, 782
Hpy188III	TCNNGA	4 cut(s)	166, 370, 407, 622
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4V	TGCA	7 cut(s)	4, 149, 227, 289, 439, 685, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	691
HpyF3I	CTNAG	1 cut(s)	791
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	256, 592
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	1 cut(s)	276
MabI	ACCWGGT	1 cut(s)	761
MaeI	CTAG	3 cut(s)	477, 605, 696
MaeIII	GTNAC	2 cut(s)	100, 274
MboII	GAAGA	3 cut(s)	71, 121, 470
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	621, 770
MluCI	AATT	5 cut(s)	195, 201, 222, 365, 625
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	7 cut(s)	133, 366, 391, 559, 625, 684, 729
MroNI	GCCGGC	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	204
MslI	CAYNNNNRTG	2 cut(s)	599, 726
MspI	CCGG	4 cut(s)	158, 338, 599, 652
MspR9I	CCNGG	3 cut(s)	158, 338, 763
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	2 cut(s)	124, 786
MvaI	CCWGG	1 cut(s)	763
MwoI	GCNNNNNNNGC	1 cut(s)	691
NaeI	GCCGGC	1 cut(s)	653
NarI	GGCGCC	1 cut(s)	243
NciI	CCSGG	2 cut(s)	158, 338
NgoMIV	GCCGGC	1 cut(s)	651
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	2 cut(s)	256, 592
NlaIV	GGNNCC	2 cut(s)	244, 308
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	694
PctI	GAATGC	2 cut(s)	124, 786
PdiI	GCCGGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	139, 401
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	687
PleI	GAGTC	1 cut(s)	507
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	761
PspN4I	GGNNCC	2 cut(s)	244, 308
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	599, 726
SatI	GCNGC	1 cut(s)	686
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	3 cut(s)	158, 338, 763
SduI	GDGCHC	2 cut(s)	621, 770
SetI	ASST	5 cut(s)	260, 421, 540, 649, 764
SexAI	ACCWGGT	1 cut(s)	761
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	237
SfoI	GGCGCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	599, 726
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	5 cut(s)	195, 201, 222, 365, 625
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	1 cut(s)	376
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	554
SspMI	CTAG	3 cut(s)	477, 605, 696
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	3 cut(s)	156, 336, 761
TaaI	ACNGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	391
TasI	AATT	5 cut(s)	195, 201, 222, 365, 625
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	139, 401
TscAI	CASTG	3 cut(s)	268, 283, 667
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	4 cut(s)	131, 152, 537, 558
TspRI	CASTG	3 cut(s)	268, 283, 667
XapI	RAATTY	2 cut(s)	365, 625
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	3 cut(s)	477, 605, 696
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.