Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000192.1

Orthogroup ID

OG0010338

Physical Location & Seq

Genomic Coordinates Reverse (-)

38105 .. 38951

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000192.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgaatccaagtgcaacactcccggttttccagaacggcgaccacaagatttacaatacaattgaaattattcagtatgtcactccactaacactccctatcactgtgtatgtagaaagaattgcaagtgtctctacaggcgtggagaacatgaccttcagtggcagagaagtcactgaatggatgcaccgaatacaacaatggaaccccaagtttttcacacttgcccacatcccggacaagtactttcgttctgtctccaaattcttgaggcgggtggtgatggctcgaatggaggaatctcctgatttagcaggtgcttatcacagaaagttgcaagaagtatatgacacagaagacaagttgaaaaactcaagtgttttgatacaggacaaagaacatctaataagactccttgatgaagttgaaaaacagctaaatgaaacaacatatttagcaggggaagagtttacaatggcagatgtcatgctcattccggtgctagcacggttggtgctcttgaatttggaggacgagtatataggtagccggccgaacactgctaaatactggattatggtgcagcagaggcctagttataagaaagtgactgcgagtcatttcaatggctggaggaagtatagaactttgtggaaaacctggtgcgctatccacatcagaagcattctaaggagattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034641 GO:0043603 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N_3

Protein Analysis

233

Amino Acids

27.5

Weight (kDa)

9.19

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77290 AT1G77290 AT1G77290
fragaria_vesca	FvH4_2g27900
malus_domestica	MD08G1159700.v1.1 MD15G1133600.v1.1
prunus_persica	Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1 Prupe.1G489200_v2.0.a1
pyrus_communis	pycom15g12040
rosa_chinensis	RchiOBHm_Chr6g0296751
rosa_laevigata	RLG00000011662
rosa_multiflora	Rmu_ssc0000192.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171200
rosa_rugosa	Rorug06G0265500 Rorug06G0265600
rosa_samantha	Rh6AG376600 Rh6BG384900 Rh6CG390300 Rh6DG377400
rosa_wichuraiana	Rw6G032930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	305
AciI	CCGC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	263, 523
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	65, 367, 428, 523, 625
AhdI	GACNNNNNGTC	1 cut(s)	615
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	136, 262
AoxI	GGCC	2 cut(s)	551, 590
ApeKI	GCWGC	1 cut(s)	583
ApoI	RAATTY	2 cut(s)	263, 523
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	668
AsuC2I	CCSGG	2 cut(s)	23, 236
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	661
BcnI	CCSGG	2 cut(s)	23, 236
BcoDI	GTCTC	2 cut(s)	136, 262
BfaI	CTAG	2 cut(s)	503, 594
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	585
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	3 cut(s)	23, 236, 661
BmeRI	GACNNNNNGTC	1 cut(s)	615
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	3 cut(s)	23, 236, 661
BmsI	GCATC	1 cut(s)	174
BmtI	GCTAGC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	652
BpuEI	CTTGAG	2 cut(s)	289, 358
BpuMI	CCSGG	2 cut(s)	23, 236
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 521, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	661
BseGI	GGATG	2 cut(s)	189, 231
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	553, 592
BsiEI	CGRYCG	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	4 cut(s)	23, 236, 497, 550
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	136, 262
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	553, 592
Bsp1286I	GDGCHC	1 cut(s)	519
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	2 cut(s)	553, 592
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	305
BspOI	GCTAGC	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	2 cut(s)	106, 510
Bst6I	CTCTTC	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	504, 551
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	2 cut(s)	189, 231
BstHHI	GCGC	1 cut(s)	668
BstMAI	GTCTC	2 cut(s)	136, 262
BstMCI	CGRYCG	1 cut(s)	554
BstMWI	GCNNNNNNNGC	1 cut(s)	589
BstNI	CCWGG	1 cut(s)	661
BstSCI	CCNGG	3 cut(s)	21, 234, 659
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	595
BstV2I	GAAGAC	1 cut(s)	363
BstZI	CGGCCG	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	553, 592
BtsCI	GGATG	2 cut(s)	189, 231
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	4 cut(s)	102, 166, 174, 558
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	504, 551
CfoI	GCGC	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	549
CsiI	ACCWGGT	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	151, 487
CviJI	RGCY	6 cut(s)	287, 436, 549, 553, 592, 630
CviKI_1	RGCY	6 cut(s)	287, 436, 549, 553, 592, 630
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	689
DriI	GACNNNNNGTC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	551
EagI	CGGCCG	1 cut(s)	551
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	459
EclXI	CGGCCG	1 cut(s)	551
Eco147I	AGGCCT	1 cut(s)	592
Eco52I	CGGCCG	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	659
FaeI	CATG	2 cut(s)	154, 490
FatI	CATG	2 cut(s)	150, 486
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	2 cut(s)	196, 218
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	2 cut(s)	503, 594
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	652
HaeIII	GGCC	2 cut(s)	553, 592
HapII	CCGG	4 cut(s)	23, 236, 497, 550
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	2 cut(s)	154, 490
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HinfI	GANTC	4 cut(s)	4, 299, 411, 616
HpaII	CCGG	4 cut(s)	23, 236, 497, 550
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	1 cut(s)	680
Hpy188III	TCNNGA	4 cut(s)	31, 268, 305, 520
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	106, 510
HpyCH4V	TGCA	5 cut(s)	14, 125, 187, 337, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	589
HpyF3I	CTNAG	1 cut(s)	689
Hsp92II	CATG	2 cut(s)	154, 490
HspAI	GCGC	1 cut(s)	666
KroI	GCCGGC	1 cut(s)	549
KroNI	GCCGGC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	1 cut(s)	174
MabI	ACCWGGT	1 cut(s)	659
MaeI	CTAG	2 cut(s)	503, 594
MaeIII	GTNAC	3 cut(s)	79, 172, 607
MboII	GAAGA	2 cut(s)	368, 476
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	5 cut(s)	60, 66, 120, 263, 523
MlyI	GAGTC	2 cut(s)	405, 625
MnlI	CCTC	5 cut(s)	264, 289, 523, 582, 627
MroNI	GCCGGC	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	69
MslI	CAYNNNNRTG	2 cut(s)	497, 624
MspI	CCGG	4 cut(s)	23, 236, 497, 550
MspR9I	CCNGG	3 cut(s)	23, 236, 661
MunI	CAATTG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	1 cut(s)	589
NaeI	GCCGGC	1 cut(s)	551
NciI	CCSGG	2 cut(s)	23, 236
NgoMIV	GCCGGC	1 cut(s)	549
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	2 cut(s)	154, 490
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	3 cut(s)	79, 172, 607
PaqCI	CACCTGC	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	684
PdiI	GCCGGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	4, 299
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	585
PleI	GAGTC	2 cut(s)	405, 624
PpsI	GAGTC	2 cut(s)	405, 624
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	497, 624
SatI	GCNGC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	2 cut(s)	405, 625
ScrFI	CCNGG	3 cut(s)	23, 236, 661
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	5 cut(s)	158, 319, 438, 547, 662
SexAI	ACCWGGT	1 cut(s)	659
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	497, 624
SmlI	CTYRAG	2 cut(s)	268, 373
SmoI	CTYRAG	2 cut(s)	268, 373
Sse9I	AATT	5 cut(s)	60, 66, 120, 263, 523
SseBI	AGGCCT	1 cut(s)	592
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	503, 594
StuI	AGGCCT	1 cut(s)	592
StyD4I	CCNGG	3 cut(s)	21, 234, 659
TaaI	ACNGT	2 cut(s)	106, 510
TaqI	TCGA	1 cut(s)	289
TasI	AATT	5 cut(s)	60, 66, 120, 263, 523
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	4, 299
TscAI	CASTG	4 cut(s)	109, 166, 181, 565
TseFI	GTSAC	3 cut(s)	79, 172, 607
TseI	GCWGC	1 cut(s)	583
Tsp45I	GTSAC	3 cut(s)	79, 172, 607
TspDTI	ATGAA	3 cut(s)	17, 435, 456
TspRI	CASTG	4 cut(s)	109, 166, 181, 565
XapI	RAATTY	2 cut(s)	263, 523
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	503, 594
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.