FvH4_2g28610

Memo-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011347
Physical Location & Seq
Forward (+)
22375182 .. 22378489
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28610.t1

Sequence Viewer

Length: 876 bp
ATGGAGATAGTCAGAAGACCATCGCACGCTGGTTCTTGGTACACCGATAACCCTAAAAAGCTAGCAGAAGAGCTTGAAGGATGGCTTAGAGAGTCTGGGCTCACCAAGTCTCATGATGTGCGAGGTGTCATTGCTCCGCATGCCGGTTATTCATATTCGGGTCGTGCTGCTGCCTATGCATTTGGCAACATTGACCCAACAAACATTACTCGGGTGTTCCTTCTTGGTCCATCTCATCATTACTACACTTTGAAGTGTGCCGTTTCAACAGCCACGGTTTACAGGACCCCCATTGGGGACCTACCTATTGATTTGGAAGTGATTGAGGAGCTAAAAGCTACTGGAAAATTTGAAACCATGGATATTCGTGTTGATGAGGATGAACATAGCATGGAAATGCATTTACCATATCTTGCTAAAGTTTTTGAGGGGCACCCAGTTAAAGTTGTACCGATTTTGGTTGGCGCTCTTAAACCTGAAGCAGAAGCTATGTATGGACAGCTCCTTGCCAAATATGTAGATGATCCAAAAAATTTCTTCTCTGTGTCATCAGACTTTTGTCATTGGGGATCTCGGTTCAACTACATGCATTATGACAAGAAACACGGGGCCATACACAGATCCATTGAGGCTTTGGACAGGATGGGAATGGATATAATAGAAACAGGAAATCCAGATGCATTCAAACAGTATCTGTCGGAGTATGATAACACCATTTGTGGGCGCCATCCGATAAGCGTTTTTCTGCATATGCTGAGAAACTGCTCAACAAAAATAAAGATCAATTTCCTCCGGTATGAGCAGTCAAGTCAGTGCAAAACTATGAGGGACAGCAGCGTGAGCTATGCATCCGCAGCAGCAAAGTTGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Memo

Protein Analysis

292

Amino Acids

32.88

Weight (kDa)

6.39

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Memo PF01875 7 - 285 4.6e-81 Memo-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 432, 723
AciI CCGC 2 cut(s) 137, 852
AclWI GGATC 3 cut(s) 518, 577, 615
AcsI RAATTY 2 cut(s) 347, 532
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 2 cut(s) 41, 450
AfiI CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
AgsI TTSAA 6 cut(s) 77, 253, 267, 353, 580, 685
AluBI AGCT 7 cut(s) 61, 73, 331, 338, 488, 502, 843
AluI AGCT 7 cut(s) 61, 73, 331, 338, 488, 502, 843
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 3 cut(s) 518, 577, 615
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 5 cut(s) 167, 170, 834, 854, 857
ApoI RAATTY 2 cut(s) 347, 532
AspLEI GCGC 2 cut(s) 467, 726
AspS9I GGNCC 4 cut(s) 227, 285, 298, 609
AsuHPI GGTGA 1 cut(s) 94
AsuNHI GCTAGC 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 3 cut(s) 227, 285, 298
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 2 cut(s) 432, 723
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 5 cut(s) 154, 157, 846, 866, 869
BccI CCATC 5 cut(s) 28, 75, 238, 637, 735
BceAI ACGGC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 62
BfoI RGCGCY 2 cut(s) 468, 727
BisI GCNGC 5 cut(s) 168, 171, 835, 855, 858
BlsI GCNGC 5 cut(s) 169, 172, 836, 856, 859
Bme18I GGWCC 3 cut(s) 227, 285, 298
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 4 cut(s) 227, 285, 298, 609
BmiI GGNNCC 5 cut(s) 287, 299, 434, 610, 725
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 3 cut(s) 667, 857, 859
BmtI GCTAGC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 431
BoxI GACNNNNGTC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 724
BsaJI CCNNGG 2 cut(s) 273, 357
BsaWI WCCGGW 1 cut(s) 792
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 346, 437
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 273, 357
BseGI GGATG 6 cut(s) 86, 385, 648, 727, 848, 874
BseLI CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 2 cut(s) 346, 437
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 5 cut(s) 154, 157, 846, 866, 869
BshFI GGCC 1 cut(s) 611
BshNI GGYRCC 2 cut(s) 432, 723
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 144, 793
BslFI GGGAC 2 cut(s) 311, 842
BslI CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 311, 842
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 102, 435
Bsp143I GATC 4 cut(s) 523, 569, 620, 780
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 137, 852
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 747
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 287, 299, 434, 610, 725
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 518, 577, 615
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 432, 723
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 2 cut(s) 346, 437
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 273, 357
BssMI GATC 4 cut(s) 523, 569, 620, 780
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 277, 690
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 724
BstC8I GCNNGC 3 cut(s) 27, 63, 141
BstDEI CTNAG 2 cut(s) 86, 755
BstDSI CCRYGG 2 cut(s) 273, 357
BstF5I GGATG 6 cut(s) 86, 385, 648, 727, 848, 874
BstH2I RGCGCY 2 cut(s) 468, 727
BstHHI GCGC 2 cut(s) 467, 726
BstKTI GATC 4 cut(s) 526, 572, 623, 783
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 4 cut(s) 523, 569, 620, 780
BstMWI GCNNNNNNNGC 4 cut(s) 140, 176, 840, 854
BstNSI RCATGY 2 cut(s) 143, 589
BstPAI GACNNNNGTC 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 5 cut(s) 154, 157, 846, 866, 869
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 569, 620
BstYI RGATCY 2 cut(s) 569, 620
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 2 cut(s) 273, 357
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 6 cut(s) 86, 385, 648, 727, 848, 874
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 3 cut(s) 27, 63, 141
CaiI CAGNNNCTG 1 cut(s) 694
CciI TCATGA 1 cut(s) 112
CfoI GCGC 2 cut(s) 467, 726
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 4 cut(s) 227, 285, 298, 609
Csp6I GTAC 2 cut(s) 40, 449
CviAII CATG 5 cut(s) 113, 140, 358, 391, 586
CviQI GTAC 2 cut(s) 40, 449
DdeI CTNAG 2 cut(s) 86, 755
DinI GGCGCC 1 cut(s) 725
DpnI GATC 4 cut(s) 525, 571, 622, 782
DpnII GATC 4 cut(s) 523, 569, 620, 780
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 227, 285, 298
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 285, 298
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 5 cut(s) 181, 402, 591, 682, 850
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 5 cut(s) 116, 143, 361, 394, 589
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 2 cut(s) 311, 842
FatI CATG 5 cut(s) 112, 139, 357, 390, 585
FauNDI CATATG 1 cut(s) 750
Fnu4HI GCNGC 5 cut(s) 168, 171, 835, 855, 858
FokI GGATG 5 cut(s) 93, 392, 655, 714, 835
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 168, 171, 835, 855, 858
FspBI CTAG 1 cut(s) 62
GlaI GCGC 2 cut(s) 466, 725
GluI GCNGC 5 cut(s) 168, 171, 835, 855, 858
HaeII RGCGCY 2 cut(s) 468, 727
HaeIII GGCC 1 cut(s) 611
HapII CCGG 2 cut(s) 144, 793
HhaI GCGC 2 cut(s) 467, 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 5 cut(s) 116, 143, 361, 394, 589
Hin6I GCGC 2 cut(s) 465, 724
HinP1I GCGC 2 cut(s) 465, 724
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 144, 793
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 42, 280
Hpy188I TCNGA 4 cut(s) 14, 553, 700, 732
Hpy188III TCNNGA 2 cut(s) 113, 674
Hpy8I GTNNAC 2 cut(s) 42, 280
HpyAV CCTTC 2 cut(s) 71, 230
HpyCH4III ACNGT 2 cut(s) 277, 690
HpyCH4V TGCA 7 cut(s) 179, 400, 589, 680, 748, 816, 848
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 176, 840, 854
HpyF3I CTNAG 2 cut(s) 86, 755
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 5 cut(s) 116, 143, 361, 394, 589
HspAI GCGC 2 cut(s) 465, 724
KasI GGCGCC 1 cut(s) 723
Kzo9I GATC 4 cut(s) 523, 569, 620, 780
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 3 cut(s) 139, 328, 507
Lsp1109I GCAGC 5 cut(s) 154, 157, 846, 866, 869
LweI GCATC 3 cut(s) 667, 857, 859
MaeI CTAG 1 cut(s) 62
MalI GATC 4 cut(s) 525, 571, 622, 782
MboI GATC 4 cut(s) 523, 569, 620, 780
MboII GAAGA 3 cut(s) 27, 80, 529
MflI RGATCY 2 cut(s) 569, 620
MhlI GDGCHC 2 cut(s) 102, 435
MluCI AATT 3 cut(s) 347, 532, 784
Mly113I GGCGCC 1 cut(s) 724
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 678, 846
MnlI CCTC 7 cut(s) 116, 319, 370, 421, 622, 800, 819
Mph1103I ATGCAT 5 cut(s) 181, 402, 591, 682, 850
MseI TTAA 2 cut(s) 441, 471
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 144, 793
Mva1269I GAATGC 1 cut(s) 680
MwoI GCNNNNNNNGC 4 cut(s) 140, 176, 840, 854
NarI GGCGCC 1 cut(s) 724
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 750
NdeII GATC 4 cut(s) 523, 569, 620, 780
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 5 cut(s) 116, 143, 361, 394, 589
NlaIV GGNNCC 5 cut(s) 287, 299, 434, 610, 725
NsiI ATGCAT 5 cut(s) 181, 402, 591, 682, 850
NspI RCATGY 2 cut(s) 143, 589
PaeI GCATGC 1 cut(s) 143
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 63
PctI GAATGC 1 cut(s) 680
PkrI GCNGC 5 cut(s) 169, 172, 836, 856, 859
PleI GAGTC 1 cut(s) 100
PluTI GGCGCC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 2 cut(s) 285, 298
PshAI GACNNNNGTC 1 cut(s) 558
Psp5II RGGWCCY 2 cut(s) 285, 298
PspN4I GGNNCC 5 cut(s) 287, 299, 434, 610, 725
PspPI GGNCC 4 cut(s) 227, 285, 298, 609
PspPPI RGGWCCY 2 cut(s) 285, 298
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 569, 620
RsaI GTAC 2 cut(s) 41, 450
RsaNI GTAC 2 cut(s) 40, 449
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 441, 471
SatI GCNGC 5 cut(s) 168, 171, 835, 855, 858
Sau3AI GATC 4 cut(s) 523, 569, 620, 780
Sau96I GGNCC 4 cut(s) 227, 285, 298, 609
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 2 cut(s) 102, 435
SfaNI GCATC 3 cut(s) 667, 857, 859
SfoI GGCGCC 1 cut(s) 725
SinI GGWCC 3 cut(s) 227, 285, 298
SmiMI CAYNNNNRTG 1 cut(s) 395
SphI GCATGC 1 cut(s) 143
Sse9I AATT 3 cut(s) 347, 532, 784
SsiI CCGC 2 cut(s) 137, 852
SspDI GGCGCC 1 cut(s) 723
SspMI CTAG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 277, 690
TasI AATT 3 cut(s) 347, 532, 784
Tru1I TTAA 2 cut(s) 441, 471
Tru9I TTAA 2 cut(s) 441, 471
TscAI CASTG 1 cut(s) 818
TseI GCWGC 5 cut(s) 167, 170, 834, 854, 857
TspDTI ATGAA 2 cut(s) 141, 396
TspRI CASTG 1 cut(s) 818
VpaK11BI GGWCC 3 cut(s) 227, 285, 298
XapI RAATTY 2 cut(s) 347, 532
XceI RCATGY 2 cut(s) 143, 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 5 cut(s) 181, 402, 591, 682, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.