Rorug06G0271200

Memo-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
41871012 .. 41874227
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0271200.1

Sequence Viewer

Length: 1707 bp
ATGATTCACAACCAATTTAGCAGCGGTTTAGAATCAGCAAACTTGGTGGTGACCTCTGATCCGGTACACCAGGCATGGAGTGTGATTCAGAAACAAAAACAGATTAATCCAAATGCAGAACCAACTTTGTGCAATGTAATCCAAGATTCAAATCTTACCATCATAGCTTTTGGCACTCCACTTGGCTCTCTTCAAGAAGAAGAAGGCTTGATTTCATCGTCAAATCTCAAGGCCGACAATTTTACTGACTTTGAATTTTTATGCACTAAAAGCAACCGAAGTTTCTCGATCAATCAATCAGCAATCAAGCTCTTTCGCTCCAACTACAATGAGCTGAATCGGAAGAAAAATGAGCTGATAAAGCTTAGTAAGACTTCACTAATAATCATCACCGGACAATCTGTGGGAGGCAGTGTGGCTACGCTTTTCACCTTATGGTTGTTGAAAAGGCTAGATTTATTGAAAACCAAACGCCCCCTTTGCATTACTTTTGGCTCACCCCTTGTTGGCGATGAACACCTCCGACAATGCGTGTTGCAATTCGCAACATGGAAATCTTGCTTCTTGCATGTAGCCTCTAACCAAGATCCTACACCTAAACTTTTTCTAACCCGAAATACGAGTGGTACTTACAAGCCTTTCGGGGCATTCCTATTATGCTCTTCATCCGGCTGTGCTTGCTCTGAGGATCCGGACCTCATCTTGGAACAATTGGTGGCAACCAATTCTGTAAGTGCACAAAACCAAGATCCTAATATAGAGTTTCGTTACGGTCAAGTTTTGGAAGATCTCAAGCACAAGGCTTTATGTAAGAGCAGTTCCCAGTCTATTGAAAGGGAAAGAGATCCACTTCAAGCAAGCATTGTCACACAACTTCTAGTAATTGGATTTCTCACACAGCAACTGCCCGATACAGAGATGCAGAATCTGATTCGAAGGATGAAAAAACATGAAACAGAGTTATTAATTCAGAAGAAGAAGAATTCTGGTTCAGACAAGAAACTGAATAAAATGAAAACGTGTTTGGCCTTATTCGAGTGGTACAAGAAGGAGTCAAACTTTTTGAACACTGGATACTATGACATGTACAAAAGGCAGTGCAATCCGAGTGATATTAATGTTAATGAGTACAAGAAAAGGCTTTGGAATTTCTGGGAGGACACAGCTACAGAAGTAGAGAATAAGCCTCAGATGGAAGGATCTCCCCTTGGAGTACGTTGGCTTTGGGCGGGTACAAACTACAGAAGGATGATTGAACCACTTCACATTGCAGAGTTCTACAAGAAAAGTGGCGCGAGAAATTACAAAAATGGTGGGAAAAGGCCTAAACATTTCATTTTGTTGGAGAAATGGCTCGAGCAGAAGCAAGCAACAGAGAAACCAAAGCCCAAAAGAGAGGTGGCTGCCACTTCAAATGAGGATTCTTGTTTCTGGGCACGCGTTGAGGACGCCATTATCTTATGCAACCTTTTGAAGAATGGGAAAGCAGTTACTGATGCAGAGAAAGTAACATACAACGAGGAGTTGAAAGAGTTTGAGGACTATGTGTGGGATGTCGTCGACAACCATACAGTGTGTCCTGATATTTTCTTGGAGAAGAGCAGTTTTATGCGATGGTGGAAGGAATACAAGGGAATGGTTGGAAGTTCTTACTCCTCACAGCTCGCCGACTATATGAATAGTCGCACTTACCTCAAGTATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

65.16

Weight (kDa)

8.7

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 77 - 203 2.4e-16 Lipase (class 3)
EDS1_EP PF18117 345 - 556 3.4e-64 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1560, 1700
AccII CGCG 2 cut(s) 1295, 1440
AccIII TCCGGA 1 cut(s) 691
AciI CCGC 2 cut(s) 24, 1229
AclWI GGATC 7 cut(s) 53, 581, 683, 696, 743, 839, 1207
AcsI RAATTY 3 cut(s) 254, 982, 1147
AcyI GRCGYC 1 cut(s) 1449
AfaI GTAC 7 cut(s) 66, 628, 1043, 1088, 1130, 1215, 1234
AfiI CCNNNNNNNGG 2 cut(s) 506, 703
AflIII ACRYGT 3 cut(s) 1019, 1083, 1438
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AluBI AGCT 7 cut(s) 167, 310, 334, 355, 364, 1166, 1663
AluI AGCT 7 cut(s) 167, 310, 334, 355, 364, 1166, 1663
Alw21I GWGCWC 1 cut(s) 739
Alw44I GTGCAC 1 cut(s) 735
AlwI GGATC 7 cut(s) 53, 581, 683, 696, 743, 839, 1207
AlwNI CAGNNNCTG 3 cut(s) 904, 928, 1493
Ama87I CYCGRG 1 cut(s) 1355
Aor13HI TCCGGA 1 cut(s) 691
AoxI GGCC 3 cut(s) 231, 1026, 1322
ApaLI GTGCAC 1 cut(s) 735
ApeKI GCWGC 2 cut(s) 21, 1403
ApoI RAATTY 3 cut(s) 254, 982, 1147
AseI ATTAAT 3 cut(s) 105, 965, 1116
Asp700I GAANNNNTTC 1 cut(s) 1260
AspLEI GCGC 1 cut(s) 1295
AspS9I GGNCC 1 cut(s) 694
AsuHPI GGTGA 4 cut(s) 61, 382, 421, 489
AsuII TTCGAA 1 cut(s) 934
AvaI CYCGRG 1 cut(s) 1355
AvaII GGWCC 1 cut(s) 694
BaeGI GKGCMC 2 cut(s) 739, 1438
BamHI GGATCC 1 cut(s) 688
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 33, 1390
BccI CCATC 3 cut(s) 167, 1186, 1608
BciT130I CCWGG 1 cut(s) 71
BciVI GTATCC 1 cut(s) 1067
BfaI CTAG 2 cut(s) 452, 878
BfmI CTRYAG 2 cut(s) 1167, 1240
BfuI GTATCC 1 cut(s) 1067
BglII AGATCT 1 cut(s) 787
BisI GCNGC 2 cut(s) 22, 1404
BlsI GCNGC 2 cut(s) 23, 1405
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 1355
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 2 cut(s) 909, 1486
BmuI ACTGGG 1 cut(s) 817
Bpu14I TTCGAA 1 cut(s) 934
BpuEI CTTGAG 3 cut(s) 212, 776, 1679
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 1449
BsaJI CCNNGG 1 cut(s) 1207
BsaWI WCCGGW 3 cut(s) 61, 392, 691
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 703
Bse1I ACTGG 2 cut(s) 823, 1075
Bse3DI GCAATG 2 cut(s) 139, 1266
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 691
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 1207
BseGI GGATG 4 cut(s) 665, 945, 1254, 1558
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 506, 703
BseMI GCAATG 2 cut(s) 139, 1266
BseMII CTCAG 2 cut(s) 675, 1202
BseNI ACTGG 2 cut(s) 823, 1075
BseRI GAGGAG 2 cut(s) 1535, 1645
BseSI GKGCMC 2 cut(s) 739, 1438
BseXI GCAGC 2 cut(s) 33, 1390
Bsh1236I CGCG 2 cut(s) 1295, 1440
BshFI GGCC 3 cut(s) 233, 1028, 1324
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 1355
BsiSI CCGG 4 cut(s) 62, 393, 669, 692
BslI CCNNNNNNNGG 2 cut(s) 506, 703
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 3 cut(s) 233, 1028, 1324
BsoBI CYCGRG 1 cut(s) 1355
Bsp119I TTCGAA 1 cut(s) 934
Bsp1286I GDGCHC 2 cut(s) 739, 1438
Bsp13I TCCGGA 1 cut(s) 691
Bsp1407I TGTACA 1 cut(s) 1086
Bsp143I GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
BspACI CCGC 2 cut(s) 24, 1229
BspANI GGCC 3 cut(s) 233, 1028, 1324
BspCNI CTCAG 2 cut(s) 676, 1201
BspEI TCCGGA 1 cut(s) 691
BspFNI CGCG 2 cut(s) 1295, 1440
BspLI GGNNCC 1 cut(s) 690
BspPI GGATC 7 cut(s) 53, 581, 683, 696, 743, 839, 1207
BspQI GCTCTTC 2 cut(s) 667, 1592
BspT104I TTCGAA 1 cut(s) 934
BsrDI GCAATG 2 cut(s) 139, 1266
BsrGI TGTACA 1 cut(s) 1086
BsrI ACTGG 2 cut(s) 823, 1075
BssECI CCNNGG 1 cut(s) 1207
BssMI GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
BssNAI GTATAC 1 cut(s) 1701
BssNI GRCGYC 1 cut(s) 1449
BssT1I CCWWGG 1 cut(s) 1207
Bst1107I GTATAC 1 cut(s) 1701
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 773, 1573
Bst6I CTCTTC 3 cut(s) 195, 667, 1592
BstACI GRCGYC 1 cut(s) 1449
BstAUI TGTACA 1 cut(s) 1086
BstBI TTCGAA 1 cut(s) 934
BstC8I GCNNGC 5 cut(s) 679, 859, 1368, 1438, 1665
BstDEI CTNAG 3 cut(s) 365, 684, 1188
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 4 cut(s) 665, 945, 1254, 1558
BstFNI CGCG 2 cut(s) 1295, 1440
BstHHI GCGC 1 cut(s) 1295
BstKTI GATC 8 cut(s) 61, 291, 589, 691, 751, 790, 847, 1202
BstMBI GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
BstMWI GCNNNNNNNGC 4 cut(s) 270, 361, 480, 678
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 2 cut(s) 572, 1087
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 1167, 1240
BstSLI GKGCMC 2 cut(s) 739, 1438
BstUI CGCG 2 cut(s) 1295, 1440
BstV1I GCAGC 2 cut(s) 33, 1390
BstX2I RGATCY 6 cut(s) 586, 688, 748, 787, 844, 1199
BstYI RGATCY 6 cut(s) 586, 688, 748, 787, 844, 1199
BstZ17I GTATAC 1 cut(s) 1701
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 3 cut(s) 233, 1028, 1324
BtgZI GCGATG 2 cut(s) 525, 1627
BtsCI GGATG 4 cut(s) 665, 945, 1254, 1558
BtsI GCAGTG 2 cut(s) 418, 1103
BtsIMutI CAGTG 4 cut(s) 418, 1068, 1103, 1578
Cac8I GCNNGC 5 cut(s) 679, 859, 1368, 1438, 1665
CaiI CAGNNNCTG 3 cut(s) 904, 928, 1493
CfoI GCGC 1 cut(s) 1295
Cfr13I GGNCC 1 cut(s) 694
CseI GACGC 1 cut(s) 1457
Csp6I GTAC 7 cut(s) 65, 627, 1042, 1087, 1129, 1214, 1233
CspCI CAANNNNNGTGG 6 cut(s) 27, 62, 1270, 1294, 1305, 1329
CviAII CATG 6 cut(s) 75, 549, 569, 950, 1084, 1704
CviQI GTAC 7 cut(s) 65, 627, 1042, 1087, 1129, 1214, 1233
DdeI CTNAG 3 cut(s) 365, 684, 1188
DpnI GATC 8 cut(s) 60, 290, 588, 690, 750, 789, 846, 1201
DpnII GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
Eam1104I CTCTTC 3 cut(s) 195, 667, 1592
EarI CTCTTC 3 cut(s) 195, 667, 1592
Eco130I CCWWGG 1 cut(s) 1207
Eco147I AGGCCT 1 cut(s) 1324
Eco47I GGWCC 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 1355
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 1207
ErhI CCWWGG 1 cut(s) 1207
FaeI CATG 6 cut(s) 78, 552, 572, 953, 1087, 1707
FatI CATG 6 cut(s) 74, 548, 568, 949, 1083, 1703
FauI CCCGC 1 cut(s) 1222
FblI GTMKAC 2 cut(s) 1560, 1700
Fnu4HI GCNGC 2 cut(s) 22, 1404
FokI GGATG 4 cut(s) 652, 952, 1261, 1565
Fsp4HI GCNGC 2 cut(s) 22, 1404
FspBI CTAG 2 cut(s) 452, 878
GlaI GCGC 1 cut(s) 1294
GluI GCNGC 2 cut(s) 22, 1404
HaeIII GGCC 3 cut(s) 233, 1028, 1324
HapII CCGG 4 cut(s) 62, 393, 669, 692
HgaI GACGC 1 cut(s) 1457
HhaI GCGC 1 cut(s) 1295
Hin1I GRCGYC 1 cut(s) 1449
Hin1II CATG 6 cut(s) 78, 552, 572, 953, 1087, 1707
Hin6I GCGC 1 cut(s) 1293
HinP1I GCGC 1 cut(s) 1293
HincII GTYRAC 1 cut(s) 1561
HindII GTYRAC 1 cut(s) 1561
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 9 cut(s) 4, 32, 85, 146, 337, 925, 931, 1052, 1421
HpaII CCGG 4 cut(s) 62, 393, 669, 692
HphI GGTGA 4 cut(s) 61, 382, 421, 489
Hpy166II GTNNAC 4 cut(s) 67, 737, 1561, 1701
Hpy188III TCNNGA 4 cut(s) 194, 286, 692, 1580
Hpy8I GTNNAC 4 cut(s) 67, 737, 1561, 1701
Hpy99I CGWCG 1 cut(s) 1562
HpyAV CCTTC 6 cut(s) 197, 930, 1042, 1190, 1239, 1615
HpyCH4III ACNGT 2 cut(s) 773, 1573
HpyCH4IV ACGT 2 cut(s) 1019, 1216
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 361, 480, 678
HpyF3I CTNAG 3 cut(s) 365, 684, 1188
HpySE526I ACGT 2 cut(s) 1019, 1216
Hsp92I GRCGYC 1 cut(s) 1449
Hsp92II CATG 6 cut(s) 78, 552, 572, 953, 1087, 1707
HspAI GCGC 1 cut(s) 1293
Kpn2I TCCGGA 1 cut(s) 691
Kzo9I GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
LguI GCTCTTC 2 cut(s) 667, 1592
LmnI GCTCC 1 cut(s) 323
Lsp1109I GCAGC 2 cut(s) 33, 1390
LweI GCATC 2 cut(s) 909, 1486
MaeI CTAG 2 cut(s) 452, 878
MaeII ACGT 2 cut(s) 1019, 1216
MaeIII GTNAC 5 cut(s) 49, 767, 865, 1489, 1507
MalI GATC 8 cut(s) 60, 290, 588, 690, 750, 789, 846, 1201
MboI GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 6 cut(s) 586, 688, 748, 787, 844, 1199
MhlI GDGCHC 2 cut(s) 739, 1438
MluI ACGCGT 1 cut(s) 1438
MlyI GAGTC 1 cut(s) 1061
MmeI TCCRAC 4 cut(s) 345, 547, 1323, 1621
MroI TCCGGA 1 cut(s) 691
MroXI GAANNNNTTC 1 cut(s) 1260
MseI TTAA 4 cut(s) 105, 965, 1116, 1122
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 4 cut(s) 62, 393, 669, 692
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 2 cut(s) 1295, 1440
MwoI GCNNNNNNNGC 4 cut(s) 270, 361, 480, 678
NdeII GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
NlaIII CATG 6 cut(s) 78, 552, 572, 953, 1087, 1707
NlaIV GGNNCC 1 cut(s) 690
NmuCI GTSAC 2 cut(s) 49, 865
NspI RCATGY 2 cut(s) 572, 1087
NspV TTCGAA 1 cut(s) 934
PaeR7I CTCGAG 1 cut(s) 1355
PceI AGGCCT 1 cut(s) 1324
PciI ACATGT 1 cut(s) 1083
PciSI GCTCTTC 2 cut(s) 667, 1592
PctI GAATGC 1 cut(s) 647
PdmI GAANNNNTTC 1 cut(s) 1260
PfeI GAWTC 8 cut(s) 4, 32, 85, 146, 337, 925, 931, 1421
PkrI GCNGC 2 cut(s) 23, 1405
PleI GAGTC 1 cut(s) 1060
PpsI GAGTC 1 cut(s) 1060
PscI ACATGT 1 cut(s) 1083
PshBI ATTAAT 3 cut(s) 105, 965, 1116
Psp6I CCWGG 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 1 cut(s) 694
PspXI VCTCGAGB 1 cut(s) 1355
PsrI GAACNNNNNNTAC 4 cut(s) 802, 834, 1058, 1090
PstNI CAGNNNCTG 3 cut(s) 904, 928, 1493
PsuI RGATCY 6 cut(s) 586, 688, 748, 787, 844, 1199
RsaI GTAC 7 cut(s) 66, 628, 1043, 1088, 1130, 1215, 1234
RsaNI GTAC 7 cut(s) 65, 627, 1042, 1087, 1129, 1214, 1233
SalI GTCGAC 1 cut(s) 1559
SapI GCTCTTC 2 cut(s) 667, 1592
SaqAI TTAA 4 cut(s) 105, 965, 1116, 1122
SatI GCNGC 2 cut(s) 22, 1404
Sau3AI GATC 8 cut(s) 58, 288, 586, 688, 748, 787, 844, 1199
Sau96I GGNCC 1 cut(s) 694
SchI GAGTC 1 cut(s) 1061
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 739, 1438
SfaNI GCATC 2 cut(s) 909, 1486
SfcI CTRYAG 2 cut(s) 1167, 1240
Sfr274I CTCGAG 1 cut(s) 1355
SfuI TTCGAA 1 cut(s) 934
SinI GGWCC 1 cut(s) 694
SlaI CTCGAG 1 cut(s) 1355
SmlI CTYRAG 4 cut(s) 227, 791, 1355, 1694
SmoI CTYRAG 4 cut(s) 227, 791, 1355, 1694
SseBI AGGCCT 1 cut(s) 1324
SsiI CCGC 2 cut(s) 24, 1229
SspMI CTAG 2 cut(s) 452, 878
StuI AGGCCT 1 cut(s) 1324
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 1207
TaaI ACNGT 2 cut(s) 773, 1573
TaiI ACGT 2 cut(s) 1022, 1219
TaqI TCGA 5 cut(s) 287, 934, 1035, 1356, 1560
TatI WGTACW 2 cut(s) 1086, 1128
TfiI GAWTC 8 cut(s) 4, 32, 85, 146, 337, 925, 931, 1421
Tru1I TTAA 4 cut(s) 105, 965, 1116, 1122
Tru9I TTAA 4 cut(s) 105, 965, 1116, 1122
TscAI CASTG 4 cut(s) 418, 1075, 1103, 1578
TseFI GTSAC 2 cut(s) 49, 865
TseI GCWGC 2 cut(s) 21, 1403
Tsp45I GTSAC 2 cut(s) 49, 865
TspDTI ATGAA 8 cut(s) 204, 528, 654, 956, 966, 1028, 1324, 1691
TspRI CASTG 4 cut(s) 418, 1075, 1103, 1578
VneI GTGCAC 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 694
VspI ATTAAT 3 cut(s) 105, 965, 1116
XapI RAATTY 3 cut(s) 254, 982, 1147
XceI RCATGY 2 cut(s) 572, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 1396
XhoI CTCGAG 1 cut(s) 1355
XmiI GTMKAC 2 cut(s) 1560, 1700
XmnI GAANNNNTTC 1 cut(s) 1260
XspI CTAG 2 cut(s) 452, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.