Prupe.1G484800_v2.0.a1

Memo-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011347
Physical Location & Seq
Reverse (-)
40392100 .. 40395308
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G484800.1

Sequence Viewer

Length: 876 bp
ATGGAGAAAGCCAGAAGAGCATCGCATGCTGGTTCCTGGTACACCGATAACCCTAGGAAGTTGTCGGAAGAGCTTGAAGGATGGCTGAGAGAATCTGGGCTCACTAAATCTCCTGATGTCCGAGGTGTCATTGCTCCGCATGCAGGTTATTCATATTCAGGTCGTGCTGCTGCCTATGCATTTGGCAACATAGACCCAACAAACATTACCCGGGTGTTCCTTCTTGGTCCATCTCACCACTATTACACTTCAAAGTGTGCTCTTTCAACAGCCACAGTTTACAAGACCCCCATAGGGGACCTAACTATCGATTTGGAAGTAATTGAGGAGCTAAAAGCAACTGGAAAATTTGAACTGATGGATATTCGCGTTGATGAGGCTGAACATAGCATGGAAATGCACTTACCGTATCTTGCTAAAGTTTTTGAGGGGCACCAGGTTAAAGTTGTACCCATTCTCGTTGGTTCTCTTAAGGCTGAAAGTGAAGCCATGTATGGACAGTTGCTTGGCAAATACGTGGATGATCCACAAAATTTCTTCTCGGTGTCGTCAGATTTTTGTCATTGGGGGTCTCGATTTAATTACACGCACTATGACAAGAAACATGGGGCCATACACAAATCTATTGAGGCTTTGGACAGGATTGGAATGGATATAATAGAAACTGGAAATCCAGATGCATTCAAAGAGTATCTGTTGGAGTTTGATAACACCATTTGTGGGCGCCACCCAATTAGTGTGTTTCTGCATATGCTGAAGAACTGTTCAACGAGCATAAAGATCAATTTTCTCCGATATGAGCAGTCGAGTCAGTGCAAAACTATGAGGGACAGCAGCGTAAGTTATGCATCTGCCGCGGCAAAGGTAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Memo

Protein Analysis

292

Amino Acids

32.65

Weight (kDa)

6.23

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 432, 723
AccII CGCG 2 cut(s) 369, 857
AciI CCGC 3 cut(s) 137, 855, 857
AclWI GGATC 1 cut(s) 518
AcsI RAATTY 2 cut(s) 347, 532
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 2 cut(s) 41, 450
AfiI CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 6 cut(s) 77, 252, 267, 353, 685, 768
AjnI CCWGG 2 cut(s) 35, 435
AluBI AGCT 2 cut(s) 73, 331
AluI AGCT 2 cut(s) 73, 331
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 3 cut(s) 167, 170, 834
ApoI RAATTY 2 cut(s) 347, 532
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 3 cut(s) 227, 298, 609
AsuC2I CCSGG 2 cut(s) 211, 212
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 2 cut(s) 227, 298
AvrII CCTAGG 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 2 cut(s) 432, 723
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 3 cut(s) 154, 157, 846
BccI CCATC 3 cut(s) 75, 238, 352
BciT130I CCWGG 2 cut(s) 37, 437
BcnI CCSGG 2 cut(s) 211, 212
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 727
BfrI CTTAAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 5 cut(s) 168, 171, 835, 855, 858
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 5 cut(s) 169, 172, 836, 856, 859
Bme1390I CCNGG 4 cut(s) 37, 211, 212, 437
Bme18I GGWCC 2 cut(s) 227, 298
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 227, 298, 609
BmiI GGNNCC 5 cut(s) 34, 299, 434, 610, 725
BmrFI CCNGG 4 cut(s) 37, 211, 212, 437
BmsI GCATC 4 cut(s) 29, 667, 857, 859
BpuMI CCSGG 2 cut(s) 211, 212
Bsa29I ATCGAT 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 517
BsaHI GRCGYC 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 53, 121, 210, 855
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
Bse1I ACTGG 2 cut(s) 346, 670
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 37, 437
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 53, 121, 210, 855
BseGI GGATG 2 cut(s) 86, 526
BseLI CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 346, 670
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 3 cut(s) 154, 157, 846
Bsh1236I CGCG 2 cut(s) 369, 857
BshFI GGCC 1 cut(s) 611
BshNI GGYRCC 2 cut(s) 432, 723
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 311, 842
BslI CCNNNNNNNGG 4 cut(s) 143, 294, 295, 720
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 2 cut(s) 311, 842
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 3 cut(s) 102, 262, 435
Bsp143I GATC 2 cut(s) 523, 780
BspACI CCGC 3 cut(s) 137, 855, 857
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 2 cut(s) 369, 857
BspLI GGNNCC 5 cut(s) 34, 299, 434, 610, 725
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 518
BspQI GCTCTTC 2 cut(s) 10, 63
BspT107I GGYRCC 2 cut(s) 432, 723
BspTI CTTAAG 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 2 cut(s) 346, 670
BssECI CCNNGG 4 cut(s) 53, 121, 210, 855
BssMI GATC 2 cut(s) 523, 780
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 37, 437
Bst4CI ACNGT 4 cut(s) 277, 408, 501, 764
Bst6I CTCTTC 2 cut(s) 10, 63
BstACI GRCGYC 1 cut(s) 724
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 27, 141
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 2 cut(s) 86, 526
BstFNI CGCG 2 cut(s) 369, 857
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 2 cut(s) 526, 783
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 2 cut(s) 523, 780
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 140, 176, 854
BstNI CCWGG 2 cut(s) 37, 437
BstNSI RCATGY 2 cut(s) 29, 143
BstSCI CCNGG 4 cut(s) 35, 209, 210, 435
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 2 cut(s) 369, 857
BstV1I GCAGC 3 cut(s) 154, 157, 846
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 1 cut(s) 611
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 855
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 86, 526
BtsIMutI CAGTG 1 cut(s) 818
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 27, 141
CfoI GCGC 1 cut(s) 726
Cfr13I GGNCC 3 cut(s) 227, 298, 609
Cfr42I CCGCGG 1 cut(s) 858
Cfr9I CCCGGG 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 309
CsiI ACCWGGT 1 cut(s) 435
Csp6I GTAC 2 cut(s) 40, 449
CviAII CATG 5 cut(s) 26, 140, 391, 490, 605
CviQI GTAC 2 cut(s) 40, 449
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 1 cut(s) 725
DpnI GATC 2 cut(s) 525, 782
DpnII GATC 2 cut(s) 523, 780
Eam1104I CTCTTC 2 cut(s) 10, 63
EarI CTCTTC 2 cut(s) 10, 63
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 227, 298
Eco57I CTGAAG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 35, 435
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 3 cut(s) 181, 682, 850
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 5 cut(s) 29, 143, 394, 493, 608
FaqI GGGAC 2 cut(s) 311, 842
FatI CATG 5 cut(s) 25, 139, 390, 489, 604
FauNDI CATATG 1 cut(s) 750
Fnu4HI GCNGC 5 cut(s) 168, 171, 835, 855, 858
FokI GGATG 2 cut(s) 93, 533
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 168, 171, 835, 855, 858
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 725
GluI GCNGC 5 cut(s) 168, 171, 835, 855, 858
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 1 cut(s) 611
HapII CCGG 1 cut(s) 211
HhaI GCGC 1 cut(s) 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 5 cut(s) 29, 143, 394, 493, 608
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HinfI GANTC 2 cut(s) 92, 808
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 42, 280
Hpy188I TCNGA 4 cut(s) 67, 122, 553, 794
Hpy188III TCNNGA 3 cut(s) 113, 573, 674
Hpy8I GTNNAC 2 cut(s) 42, 280
HpyAV CCTTC 2 cut(s) 71, 230
HpyCH4III ACNGT 4 cut(s) 277, 408, 501, 764
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 7 cut(s) 143, 179, 400, 680, 748, 816, 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 140, 176, 854
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 5 cut(s) 29, 143, 394, 493, 608
HspAI GCGC 1 cut(s) 724
KasI GGCGCC 1 cut(s) 723
KspI CCGCGG 1 cut(s) 858
Kzo9I GATC 2 cut(s) 523, 780
LguI GCTCTTC 2 cut(s) 10, 63
LmnI GCTCC 2 cut(s) 139, 328
Lsp1109I GCAGC 3 cut(s) 154, 157, 846
LweI GCATC 4 cut(s) 29, 667, 857, 859
MabI ACCWGGT 1 cut(s) 435
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 516
MalI GATC 2 cut(s) 525, 782
MboI GATC 2 cut(s) 523, 780
MboII GAAGA 4 cut(s) 27, 80, 529, 769
MhlI GDGCHC 3 cut(s) 102, 262, 435
MluCI AATT 6 cut(s) 321, 347, 532, 580, 732, 784
Mly113I GGCGCC 1 cut(s) 724
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 2 cut(s) 45, 678
MnlI CCTC 6 cut(s) 116, 319, 370, 421, 622, 819
Mph1103I ATGCAT 3 cut(s) 181, 682, 850
MseI TTAA 3 cut(s) 441, 471, 579
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 857
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 4 cut(s) 37, 211, 212, 437
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 2 cut(s) 37, 437
MvnI CGCG 2 cut(s) 369, 857
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 140, 176, 854
NarI GGCGCC 1 cut(s) 724
NciI CCSGG 2 cut(s) 211, 212
NdeI CATATG 1 cut(s) 750
NdeII GATC 2 cut(s) 523, 780
NlaIII CATG 5 cut(s) 29, 143, 394, 493, 608
NlaIV GGNNCC 5 cut(s) 34, 299, 434, 610, 725
NsiI ATGCAT 3 cut(s) 181, 682, 850
NspI RCATGY 2 cut(s) 29, 143
PaeI GCATGC 2 cut(s) 29, 143
PciSI GCTCTTC 2 cut(s) 10, 63
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 5 cut(s) 169, 172, 836, 856, 859
PleI GAGTC 1 cut(s) 816
PluTI GGCGCC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 816
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 35, 435
PspGI CCWGG 2 cut(s) 35, 435
PspN4I GGNNCC 5 cut(s) 34, 299, 434, 610, 725
PspPI GGNCC 3 cut(s) 227, 298, 609
PspPPI RGGWCCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 41, 450
RsaNI GTAC 2 cut(s) 40, 449
RseI CAYNNNNRTG 1 cut(s) 395
SacII CCGCGG 1 cut(s) 858
SapI GCTCTTC 2 cut(s) 10, 63
SaqAI TTAA 3 cut(s) 441, 471, 579
SatI GCNGC 5 cut(s) 168, 171, 835, 855, 858
Sau3AI GATC 2 cut(s) 523, 780
Sau96I GGNCC 3 cut(s) 227, 298, 609
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 4 cut(s) 37, 211, 212, 437
SduI GDGCHC 3 cut(s) 102, 262, 435
SetI ASST 9 cut(s) 75, 127, 148, 163, 303, 333, 441, 519, 867
SexAI ACCWGGT 1 cut(s) 435
SfaNI GCATC 4 cut(s) 29, 667, 857, 859
SfoI GGCGCC 1 cut(s) 725
Sfr303I CCGCGG 1 cut(s) 858
SgrBI CCGCGG 1 cut(s) 858
SinI GGWCC 2 cut(s) 227, 298
SmaI CCCGGG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
SphI GCATGC 2 cut(s) 29, 143
Sse9I AATT 6 cut(s) 321, 347, 532, 580, 732, 784
SsiI CCGC 3 cut(s) 137, 855, 857
SspDI GGCGCC 1 cut(s) 723
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 4 cut(s) 35, 209, 210, 435
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 4 cut(s) 277, 408, 501, 764
TaiI ACGT 1 cut(s) 519
TaqI TCGA 3 cut(s) 309, 574, 806
TasI AATT 6 cut(s) 321, 347, 532, 580, 732, 784
TauI GCSGC 2 cut(s) 857, 860
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 3 cut(s) 441, 471, 579
Tru9I TTAA 3 cut(s) 441, 471, 579
TscAI CASTG 1 cut(s) 818
TseI GCWGC 3 cut(s) 167, 170, 834
TspDTI ATGAA 1 cut(s) 141
TspMI CCCGGG 1 cut(s) 210
TspRI CASTG 1 cut(s) 818
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 227, 298
XapI RAATTY 2 cut(s) 347, 532
XceI RCATGY 2 cut(s) 29, 143
XmaI CCCGGG 1 cut(s) 210
XmaJI CCTAGG 1 cut(s) 53
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 3 cut(s) 181, 682, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.