MD15G1129200.v1.1

Memo-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011347
Physical Location & Seq
Reverse (-)
9360007 .. 9363053
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1129200.v1.1.491

Sequence Viewer

Length: 876 bp
ATGGAGAAAGTCCGAAGAGCATCGCACGCCGGTTCTTGGTACACCGACAATCCTAAGAAGTTATCAGAAGAGATTGAAGGATGGCTGAGAGCATCTGGGCTCAATAAATCTCCTGATGTTCGAGGTGTCATTGCTCCGCATGCAGGGTATTCTTATTCGGGTCGTGCCGCTGCCTATGCATTTGGCAACATTGACCCAACAAACATTAAGCGGGTGTTCCTGCTCGGTCCATCTCACCACCATTACACTCCAAAGTGTGCTCTTTCTACGGCCACGGTTTACAAGACCCCCATTGGGGACCTACCTATTGATTTGGAAGTGATTGAGGAGCTTAAAGCTTCTGGAAAATTTGAACTGATGGATATTCGCGTTGATGAGGCTGAACATAGCATGGAAATGCACTTGCCTTATCTTGCTAAAGTGTTTGAGGGGCACCAAGTTAAAGTTGTGCCCATATTGGTTGGTGCTCTTAAAGCTGAAAGTGAAGCCATGTATGGACAGTTCCTTGCAAAATATGTGGATGATCCACAAAACTTCTTCTCTGTGTCATCAGATTTTTGTCATTGGGGGTCTCGGTTCAATTACATGCACTATGACAAGAAACACGGGGCCATACACAAATCTATTGAGGCTTTGGACAGGATGGGAATGGAAATAATAGAAACTGGAAATCCAGATGCGTTCAAACAGTATCTTTCGGAGTTTGATAACACCATTTGCGGGCGCCACCCAATTAGTGTTTTTCTGCATATGCTGAGGAATTGCTCAACAAAGATAAAGATCAATTTTCTCCGATACGAGCAGTCAAGTCAGTGCAAAACCACGAGGGACAGCAGCGTAAGTTATGCATCTGCGGCAGCAAAGGTAGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Memo

Protein Analysis

292

Amino Acids

32.7

Weight (kDa)

6.92

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Memo PF01875 7 - 285 1.3e-80 Memo-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 432, 723
AccII CGCG 1 cut(s) 369
AciI CCGC 5 cut(s) 137, 168, 211, 720, 854
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 720
AgsI TTSAA 4 cut(s) 77, 353, 580, 685
AluBI AGCT 3 cut(s) 331, 338, 476
AluI AGCT 3 cut(s) 331, 338, 476
Alw21I GWGCWC 2 cut(s) 262, 469
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 518
AoxI GGCC 2 cut(s) 270, 609
ApeKI GCWGC 3 cut(s) 170, 834, 857
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 3 cut(s) 227, 298, 609
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 227, 298
BaeGI GKGCMC 2 cut(s) 435, 453
BanI GGYRCC 2 cut(s) 432, 723
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 823
Bbv12I GWGCWC 2 cut(s) 262, 469
BbvCI CCTCAGC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 157, 846, 869
BccI CCATC 4 cut(s) 75, 238, 352, 637
BceAI ACGGC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 727
BisI GCNGC 5 cut(s) 168, 171, 835, 855, 858
BlsI GCNGC 5 cut(s) 169, 172, 836, 856, 859
Bme18I GGWCC 2 cut(s) 227, 298
BmgT120I GGNCC 3 cut(s) 227, 298, 609
BmiI GGNNCC 4 cut(s) 299, 434, 610, 725
BmsI GCATC 5 cut(s) 29, 101, 667, 857, 859
Bpu10I CCTNAGC 1 cut(s) 755
BsaBI GATNNNNATC 1 cut(s) 779
BsaHI GRCGYC 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 720
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 779
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 86, 526, 648
BseJI GATNNNNATC 1 cut(s) 779
BseLI CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 720
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 77, 746
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 2 cut(s) 435, 453
BseXI GCAGC 3 cut(s) 157, 846, 869
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 272, 611
BshNI GGYRCC 2 cut(s) 432, 723
BsiHKAI GWGCWC 2 cut(s) 262, 469
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 311, 842
BslI CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 720
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 2 cut(s) 311, 842
BsnI GGCC 2 cut(s) 272, 611
Bso31I GGTCTC 1 cut(s) 576
Bsp1286I GDGCHC 5 cut(s) 102, 262, 435, 453, 469
Bsp143I GATC 2 cut(s) 523, 780
BspACI CCGC 5 cut(s) 137, 168, 211, 720, 854
BspANI GGCC 2 cut(s) 272, 611
BspCNI CTCAG 2 cut(s) 78, 747
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 299, 434, 610, 725
BspPI GGATC 1 cut(s) 518
BspQI GCTCTTC 1 cut(s) 10
BspT107I GGYRCC 2 cut(s) 432, 723
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 670
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 523, 780
BssNI GRCGYC 1 cut(s) 724
BssSI CACGAG 1 cut(s) 823
Bst2BI CACGAG 1 cut(s) 823
Bst4CI ACNGT 3 cut(s) 277, 501, 690
Bst6I CTCTTC 2 cut(s) 10, 63
BstACI GRCGYC 1 cut(s) 724
BstC8I GCNNGC 3 cut(s) 27, 141, 722
BstDEI CTNAG 3 cut(s) 54, 86, 755
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 86, 526, 648
BstFNI CGCG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 2 cut(s) 526, 783
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 2 cut(s) 523, 780
BstMWI GCNNNNNNNGC 5 cut(s) 26, 140, 176, 473, 854
BstNSI RCATGY 2 cut(s) 143, 589
BstSLI GKGCMC 2 cut(s) 435, 453
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 157, 846, 869
BsuRI GGCC 2 cut(s) 272, 611
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 86, 526, 648
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 3 cut(s) 27, 141, 722
CfoI GCGC 1 cut(s) 726
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 227, 298, 609
Csp6I GTAC 1 cut(s) 40
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 4 cut(s) 140, 391, 490, 586
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 3 cut(s) 54, 86, 755
DinI GGCGCC 1 cut(s) 725
DpnI GATC 2 cut(s) 525, 782
DpnII GATC 2 cut(s) 523, 780
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 10, 63
EarI CTCTTC 2 cut(s) 10, 63
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 227, 298
EcoO109I RGGNCCY 1 cut(s) 298
EcoT22I ATGCAT 2 cut(s) 181, 850
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
FaeI CATG 4 cut(s) 143, 394, 493, 589
FaqI GGGAC 2 cut(s) 311, 842
FatI CATG 4 cut(s) 139, 390, 489, 585
FauI CCCGC 2 cut(s) 204, 713
FauNDI CATATG 1 cut(s) 750
Fnu4HI GCNGC 5 cut(s) 168, 171, 835, 855, 858
FokI GGATG 3 cut(s) 93, 533, 655
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 5 cut(s) 168, 171, 835, 855, 858
GlaI GCGC 1 cut(s) 725
GluI GCNGC 5 cut(s) 168, 171, 835, 855, 858
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 2 cut(s) 272, 611
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 4 cut(s) 143, 394, 493, 589
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 336
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 42, 280
Hpy188I TCNGA 5 cut(s) 14, 67, 553, 700, 794
Hpy188III TCNNGA 3 cut(s) 113, 342, 674
Hpy8I GTNNAC 2 cut(s) 42, 280
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 3 cut(s) 277, 501, 690
HpyCH4V TGCA 8 cut(s) 143, 179, 400, 509, 589, 748, 816, 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 140, 176, 473, 854
HpyF3I CTNAG 3 cut(s) 54, 86, 755
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 4 cut(s) 143, 394, 493, 589
HspAI GCGC 1 cut(s) 724
KasI GGCGCC 1 cut(s) 723
Kzo9I GATC 2 cut(s) 523, 780
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 139, 328
LpnPI CCDG 9 cut(s) 43, 81, 126, 129, 233, 327, 625, 651, 687
Lsp1109I GCAGC 3 cut(s) 157, 846, 869
LweI GCATC 5 cut(s) 29, 101, 667, 857, 859
MalI GATC 2 cut(s) 525, 782
MboI GATC 2 cut(s) 523, 780
MboII GAAGA 3 cut(s) 27, 80, 529
MhlI GDGCHC 5 cut(s) 102, 262, 435, 453, 469
MluCI AATT 5 cut(s) 347, 580, 732, 760, 784
Mly113I GGCGCC 1 cut(s) 724
MnlI CCTC 7 cut(s) 116, 319, 370, 421, 622, 750, 819
Mph1103I ATGCAT 2 cut(s) 181, 850
MseI TTAA 5 cut(s) 207, 333, 441, 471, 874
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 5 cut(s) 26, 140, 176, 473, 854
NarI GGCGCC 1 cut(s) 724
NdeI CATATG 1 cut(s) 750
NdeII GATC 2 cut(s) 523, 780
NlaIII CATG 4 cut(s) 143, 394, 493, 589
NlaIV GGNNCC 4 cut(s) 299, 434, 610, 725
NsiI ATGCAT 2 cut(s) 181, 850
NspI RCATGY 2 cut(s) 143, 589
PaeI GCATGC 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 169, 172, 836, 856, 859
PluTI GGCGCC 1 cut(s) 727
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 299, 434, 610, 725
PspPI GGNCC 3 cut(s) 227, 298, 609
PspPPI RGGWCCY 1 cut(s) 298
PsrI GAACNNNNNNTAC 2 cut(s) 485, 517
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 5 cut(s) 207, 333, 441, 471, 874
SatI GCNGC 5 cut(s) 168, 171, 835, 855, 858
Sau3AI GATC 2 cut(s) 523, 780
Sau96I GGNCC 3 cut(s) 227, 298, 609
SduI GDGCHC 5 cut(s) 102, 262, 435, 453, 469
SetI ASST 7 cut(s) 127, 303, 307, 333, 340, 478, 867
SfaNI GCATC 5 cut(s) 29, 101, 667, 857, 859
SfoI GGCGCC 1 cut(s) 725
SinI GGWCC 2 cut(s) 227, 298
SmiMI CAYNNNNRTG 1 cut(s) 395
SphI GCATGC 1 cut(s) 143
Sse9I AATT 5 cut(s) 347, 580, 732, 760, 784
SsiI CCGC 5 cut(s) 137, 168, 211, 720, 854
SspDI GGCGCC 1 cut(s) 723
TaaI ACNGT 3 cut(s) 277, 501, 690
TaqI TCGA 1 cut(s) 121
TaqII GACCGA 1 cut(s) 215
TasI AATT 5 cut(s) 347, 580, 732, 760, 784
TauI GCSGC 2 cut(s) 170, 857
Tru1I TTAA 5 cut(s) 207, 333, 441, 471, 874
Tru9I TTAA 5 cut(s) 207, 333, 441, 471, 874
TscAI CASTG 1 cut(s) 818
TseI GCWGC 3 cut(s) 170, 834, 857
TspRI CASTG 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 227, 298
XapI RAATTY 1 cut(s) 347
XceI RCATGY 2 cut(s) 143, 589
Zsp2I ATGCAT 2 cut(s) 181, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.