pycom08g13130

Memo-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011347
Physical Location & Seq
Reverse (-)
11761640 .. 11764360
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13130.8

Sequence Viewer

Length: 723 bp
ATGGAGAAAGTCAGAAGAGCATCGCACGCCGGTTCTTGGTACACCGACAATGCTAAGAAGTTATCAGAAGAGATTGAAGGATGGCTGAGAGCATCTGGGCTCACTAAATCTCCTCATGTTCGAGGTGTCATTGCTCCGCACGCAGGGTATTCGTATTCGGGTCGTGCCGCTGCCTATGCATTTGGCAACATTGACCCAACAGACATTACGCGGGTGTTCCTGCTCGGTCCATCTCACCACCATTACACTCCAAAGTGTGCTCTTTCGACGGCCACGGTGTACAAGACCCCCATTGGGGACCTACCTATTGATTTGGAAGTGATTGAGGAGCTTAAAGCTTCTGGAAAATTTGAACTGATGGATATTATCGTTGATGAGGCTGAACATAGCATGGAAATGCACTTGCCATATCTTGCTAAAGTGTTTGAGGGGCACCAAGTTAAAGTTGTACCCATTTTGGTTGGTGCTCTTAAAGCTGAAAATTTTTGTCATTGGGGGTCTCGGTTCAAATACATGCACTATGACAAGAAACATGGTGCCATACACAAATCAATTGAGGCTTTGGACAGGATGGGGATGGATATAATAGAAACTGGAAATCCAGATGCGTTCAAGCAGTATCTGTCAGAGTTTAATAACACCATTTGTGGGCGCCACCCAATTAGCGTTTTTCTGCATATGCTGAGGAATTGCCCAATAAACATAAAGATCGATCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Memo

Protein Analysis

241

Amino Acids

26.98

Weight (kDa)

6.95

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 432, 536, 651
AccII CGCG 1 cut(s) 211
AciI CCGC 3 cut(s) 137, 168, 211
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 2 cut(s) 347, 481
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 3 cut(s) 41, 281, 450
AfiI CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 648
AgsI TTSAA 4 cut(s) 77, 353, 508, 613
AluBI AGCT 3 cut(s) 331, 338, 476
AluI AGCT 3 cut(s) 331, 338, 476
Alw21I GWGCWC 2 cut(s) 262, 469
Alw26I GTCTC 1 cut(s) 504
AlwNI CAGNNNCTG 1 cut(s) 622
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 347, 481
AspLEI GCGC 1 cut(s) 654
AspS9I GGNCC 2 cut(s) 227, 298
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 227, 298
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 3 cut(s) 432, 536, 651
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 2 cut(s) 262, 469
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 1 cut(s) 157
BccI CCATC 5 cut(s) 75, 238, 352, 565, 571
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BcoDI GTCTC 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 655
BisI GCNGC 2 cut(s) 168, 171
BlsI GCNGC 2 cut(s) 169, 172
Bme18I GGWCC 2 cut(s) 227, 298
BmgT120I GGNCC 2 cut(s) 227, 298
BmiI GGNNCC 4 cut(s) 299, 434, 538, 653
BmsI GCATC 3 cut(s) 29, 101, 595
Bpu10I CCTNAGC 1 cut(s) 683
Bsa29I ATCGAT 1 cut(s) 711
BsaHI GRCGYC 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 648
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 86, 576, 582
BseLI CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 648
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 77, 674
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 102, 341
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 272
BshNI GGYRCC 3 cut(s) 432, 536, 651
BshVI ATCGAT 1 cut(s) 711
BsiHKAI GWGCWC 2 cut(s) 262, 469
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 5 cut(s) 36, 143, 294, 295, 648
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 272
Bso31I GGTCTC 1 cut(s) 504
Bsp1286I GDGCHC 4 cut(s) 102, 262, 435, 469
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 708, 712
BspACI CCGC 3 cut(s) 137, 168, 211
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 78, 675
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 4 cut(s) 299, 434, 538, 653
BspQI GCTCTTC 1 cut(s) 10
BspT107I GGYRCC 3 cut(s) 432, 536, 651
BspTNI GGTCTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 708, 712
BssNI GRCGYC 1 cut(s) 652
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 10, 63
BstACI GRCGYC 1 cut(s) 652
BstAUI TGTACA 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 27, 141
BstDEI CTNAG 3 cut(s) 54, 86, 683
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 86, 576, 582
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 2 cut(s) 711, 715
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 2 cut(s) 708, 712
BstMWI GCNNNNNNNGC 4 cut(s) 26, 140, 176, 473
BstNSI RCATGY 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 711
BsuRI GGCC 1 cut(s) 272
BsuTUI ATCGAT 1 cut(s) 711
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 86, 576, 582
Cac8I GCNNGC 2 cut(s) 27, 141
CaiI CAGNNNCTG 1 cut(s) 622
CfoI GCGC 1 cut(s) 654
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 227, 298
ClaI ATCGAT 1 cut(s) 711
Csp6I GTAC 3 cut(s) 40, 280, 449
CviAII CATG 4 cut(s) 116, 391, 514, 533
CviJI RGCY 8 cut(s) 85, 100, 272, 331, 338, 380, 476, 560
CviKI_1 RGCY 8 cut(s) 85, 100, 272, 331, 338, 380, 476, 560
CviQI GTAC 3 cut(s) 40, 280, 449
DdeI CTNAG 3 cut(s) 54, 86, 683
DinI GGCGCC 1 cut(s) 653
DpnI GATC 2 cut(s) 710, 714
DpnII GATC 2 cut(s) 708, 712
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 10, 63
EarI CTCTTC 2 cut(s) 10, 63
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 227, 298
EcoO109I RGGNCCY 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 653
EheI GGCGCC 1 cut(s) 653
FaeI CATG 4 cut(s) 119, 394, 517, 536
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 115, 390, 513, 532
FauI CCCGC 1 cut(s) 204
FauNDI CATATG 1 cut(s) 678
Fnu4HI GCNGC 2 cut(s) 168, 171
FokI GGATG 3 cut(s) 93, 583, 589
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 168, 171
GlaI GCGC 1 cut(s) 653
GluI GCNGC 2 cut(s) 168, 171
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 654
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 4 cut(s) 119, 394, 517, 536
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 336
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 42, 280
Hpy188I TCNGA 4 cut(s) 14, 67, 628, 722
Hpy188III TCNNGA 2 cut(s) 342, 602
Hpy8I GTNNAC 2 cut(s) 42, 280
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 179, 400, 517, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 140, 176, 473
HpyF3I CTNAG 3 cut(s) 54, 86, 683
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 4 cut(s) 119, 394, 517, 536
HspAI GCGC 1 cut(s) 652
KasI GGCGCC 1 cut(s) 651
Kzo9I GATC 2 cut(s) 708, 712
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 139, 328
LpnPI CCDG 8 cut(s) 43, 81, 129, 233, 327, 553, 579, 615
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 3 cut(s) 29, 101, 595
MalI GATC 2 cut(s) 710, 714
MboI GATC 2 cut(s) 708, 712
MboII GAAGA 3 cut(s) 27, 80, 707
MfeI CAATTG 1 cut(s) 552
MhlI GDGCHC 4 cut(s) 102, 262, 435, 469
MluCI AATT 5 cut(s) 347, 481, 552, 660, 688
Mly113I GGCGCC 1 cut(s) 652
MnlI CCTC 7 cut(s) 116, 123, 319, 370, 421, 550, 678
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 4 cut(s) 333, 441, 471, 633
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 552
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 26, 140, 176, 473
NarI GGCGCC 1 cut(s) 652
NdeI CATATG 1 cut(s) 678
NdeII GATC 2 cut(s) 708, 712
NlaIII CATG 4 cut(s) 119, 394, 517, 536
NlaIV GGNNCC 4 cut(s) 299, 434, 538, 653
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 169, 172
PluTI GGCGCC 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 299, 434, 538, 653
PspPI GGNCC 2 cut(s) 227, 298
PspPPI RGGWCCY 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 622
RsaI GTAC 3 cut(s) 41, 281, 450
RsaNI GTAC 3 cut(s) 40, 280, 449
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 4 cut(s) 333, 441, 471, 633
SatI GCNGC 2 cut(s) 168, 171
Sau3AI GATC 2 cut(s) 708, 712
Sau96I GGNCC 2 cut(s) 227, 298
SduI GDGCHC 4 cut(s) 102, 262, 435, 469
SetI ASST 6 cut(s) 127, 303, 307, 333, 340, 478
SfaNI GCATC 3 cut(s) 29, 101, 595
SfoI GGCGCC 1 cut(s) 653
SinI GGWCC 2 cut(s) 227, 298
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 5 cut(s) 347, 481, 552, 660, 688
SsiI CCGC 3 cut(s) 137, 168, 211
SspDI GGCGCC 1 cut(s) 651
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 121, 266, 711
TaqII GACCGA 1 cut(s) 215
TasI AATT 5 cut(s) 347, 481, 552, 660, 688
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 4 cut(s) 333, 441, 471, 633
Tru9I TTAA 4 cut(s) 333, 441, 471, 633
TseI GCWGC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 227, 298
XapI RAATTY 2 cut(s) 347, 481
XceI RCATGY 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.