Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011347

Physical Location & Seq

Genomic Coordinates Reverse (-)

7892744 .. 7895447

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGAAAGTCCGAAGAGCATCGCACGCCGGTTCTTGGTACACCGACAATCCTAAGAAGTTATCAGAAGAGATTGAAGGATGGCTGAGAGCATCTGGGCTCAATAAATCTCCTGATGTTCGAGGTGTCATTGCTCCGCATGCAGGGTATTCTTATTCGGGTCGAGCCGCTGCCTATGCATTTGGCAACATTGACCCAACAAACATTAAGCGGGTGTTCCTGCTCGGTCCATCTCACCACCATTACACTCCAAAGTGTGCTCTTTCTACGGCCACGGTTTACAAGACCCCCATTGGGGACCTACCTATTGATTTGGAAGTGATTGAGGAGCTTAAAGCTTCTGGAAAATTTGATCTGATGGATATTCGCGTTGATGAGGCTGAACATAGCATGGAAATGCACTTGCCTTATCTTGCTAAAGTGTTTGAGGGGCATCAAGTTAAAGTTGTACCCATATTGGTTGGTGCTCTTAAAGCTGAAAATTTTTGTCATTGGGGGTCTCGGTTCAATTACATGCACTATGACAAGAAACACGGGGCCATACACAAATCTATTGAGGCTTTGGACAGGATGGGAATGGAAATAATAGAAACTGGAAATCCAGATGCGTTCAAACAGTATCTTTCGGAGTTTGATAACACCATTTGCGGGCGCTACCCAATTAGTGTTTTTCTACATATGCTGAGGAATTGCTCAACAAAGATAAAGATCAATTTTCTCCGATACGAGCAGTCAAGTCAGTGCAAAACTACGAGGGACAGCAGCGTAAGTTATGCATCTGCGGCAGCAAAGGTAGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Memo

Protein Analysis

268

Amino Acids

30.0

Weight (kDa)

8.18

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Memo	PF01875	7 - 160	5.4e-44	Memo-like protein
Memo	PF01875	161 - 261	2.1e-21	Memo-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25280
fragaria_vesca	FvH4_2g28610
malus_domestica	MD08G1152600.v1.1 MD15G1129200.v1.1
prunus_persica	Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1
pyrus_communis	pycom08g13130 pycom15g11640
rosa_chinensis	RchiOBHm_Chr6g0297381
rosa_laevigata	RLG00000011604
rosa_multiflora	Rmu_sc0004989.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170570
rosa_rugosa	Rorug06G0271200
rosa_samantha	Rh6AG382700 Rh6BG391000 Rh6CG395900
rosa_wichuraiana	Rw6G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	5 cut(s)	137, 168, 211, 648, 782
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	347, 481
AfaI	GTAC	2 cut(s)	41, 450
AfiI	CCNNNNNNNGG	5 cut(s)	36, 143, 294, 295, 648
AgsI	TTSAA	3 cut(s)	77, 508, 613
AluBI	AGCT	3 cut(s)	331, 338, 476
AluI	AGCT	3 cut(s)	331, 338, 476
Alw21I	GWGCWC	2 cut(s)	262, 469
Alw26I	GTCTC	1 cut(s)	504
AoxI	GGCC	2 cut(s)	270, 537
ApeKI	GCWGC	3 cut(s)	170, 762, 785
ApoI	RAATTY	2 cut(s)	347, 481
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	3 cut(s)	227, 298, 537
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	227, 298
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	262, 469
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	3 cut(s)	157, 774, 797
BccI	CCATC	4 cut(s)	75, 238, 352, 565
BceAI	ACGGC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	655
BisI	GCNGC	5 cut(s)	168, 171, 763, 783, 786
BlsI	GCNGC	5 cut(s)	169, 172, 764, 784, 787
Bme18I	GGWCC	2 cut(s)	227, 298
BmgT120I	GGNCC	3 cut(s)	227, 298, 537
BmiI	GGNNCC	2 cut(s)	299, 538
BmsI	GCATC	6 cut(s)	29, 101, 442, 595, 785, 787
Bpu10I	CCTNAGC	1 cut(s)	683
BsaBI	GATNNNNATC	1 cut(s)	707
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 143, 294, 295, 648
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	86, 576
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	5 cut(s)	36, 143, 294, 295, 648
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	77, 674
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	157, 774, 797
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	272, 539
BsiHKAI	GWGCWC	2 cut(s)	262, 469
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	311, 770
BslI	CCNNNNNNNGG	5 cut(s)	36, 143, 294, 295, 648
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	311, 770
BsnI	GGCC	2 cut(s)	272, 539
Bso31I	GGTCTC	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	102, 262, 469
Bsp143I	GATC	2 cut(s)	352, 708
BspACI	CCGC	5 cut(s)	137, 168, 211, 648, 782
BspANI	GGCC	2 cut(s)	272, 539
BspCNI	CTCAG	2 cut(s)	78, 675
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	299, 538
BspQI	GCTCTTC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	598
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	352, 708
Bst4CI	ACNGT	2 cut(s)	277, 618
Bst6I	CTCTTC	2 cut(s)	10, 63
BstC8I	GCNNGC	3 cut(s)	27, 141, 650
BstDEI	CTNAG	3 cut(s)	54, 86, 683
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	86, 576
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	2 cut(s)	355, 711
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	2 cut(s)	352, 708
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 140, 176, 473, 782
BstNSI	RCATGY	2 cut(s)	143, 517
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	157, 774, 797
BsuRI	GGCC	2 cut(s)	272, 539
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	86, 576
BtsIMutI	CAGTG	1 cut(s)	746
Cac8I	GCNNGC	3 cut(s)	27, 141, 650
CfoI	GCGC	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	227, 298, 537
Csp6I	GTAC	2 cut(s)	40, 449
CviAII	CATG	3 cut(s)	140, 391, 514
CviQI	GTAC	2 cut(s)	40, 449
DdeI	CTNAG	3 cut(s)	54, 86, 683
DpnI	GATC	2 cut(s)	354, 710
DpnII	GATC	2 cut(s)	352, 708
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	10, 63
EarI	CTCTTC	2 cut(s)	10, 63
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	227, 298
EcoO109I	RGGNCCY	1 cut(s)	298
EcoT22I	ATGCAT	2 cut(s)	181, 778
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	3 cut(s)	143, 394, 517
FaqI	GGGAC	2 cut(s)	311, 770
FatI	CATG	3 cut(s)	139, 390, 513
FauI	CCCGC	2 cut(s)	204, 641
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	5 cut(s)	168, 171, 763, 783, 786
FokI	GGATG	2 cut(s)	93, 583
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	5 cut(s)	168, 171, 763, 783, 786
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	5 cut(s)	168, 171, 763, 783, 786
HaeII	RGCGCY	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	272, 539
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	3 cut(s)	143, 394, 517
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	336
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	42, 280
Hpy188I	TCNGA	5 cut(s)	14, 67, 357, 628, 722
Hpy188III	TCNNGA	3 cut(s)	113, 342, 602
Hpy8I	GTNNAC	2 cut(s)	42, 280
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	277, 618
HpyCH4V	TGCA	6 cut(s)	143, 179, 400, 517, 744, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 140, 176, 473, 782
HpyF3I	CTNAG	3 cut(s)	54, 86, 683
Hsp92II	CATG	3 cut(s)	143, 394, 517
HspAI	GCGC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	352, 708
LguI	GCTCTTC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	139, 328
LpnPI	CCDG	9 cut(s)	43, 81, 126, 129, 233, 327, 553, 579, 615
Lsp1109I	GCAGC	3 cut(s)	157, 774, 797
LweI	GCATC	6 cut(s)	29, 101, 442, 595, 785, 787
MalI	GATC	2 cut(s)	354, 710
MboI	GATC	2 cut(s)	352, 708
MboII	GAAGA	2 cut(s)	27, 80
MhlI	GDGCHC	3 cut(s)	102, 262, 469
MluCI	AATT	6 cut(s)	347, 481, 508, 660, 688, 712
MnlI	CCTC	7 cut(s)	116, 319, 370, 421, 550, 678, 747
Mph1103I	ATGCAT	2 cut(s)	181, 778
MseI	TTAA	5 cut(s)	207, 333, 441, 471, 802
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	5 cut(s)	26, 140, 176, 473, 782
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	2 cut(s)	352, 708
NlaIII	CATG	3 cut(s)	143, 394, 517
NlaIV	GGNNCC	2 cut(s)	299, 538
NsiI	ATGCAT	2 cut(s)	181, 778
NspI	RCATGY	2 cut(s)	143, 517
PaeI	GCATGC	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	10
PkrI	GCNGC	5 cut(s)	169, 172, 764, 784, 787
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	299, 538
PspPI	GGNCC	3 cut(s)	227, 298, 537
PspPPI	RGGWCCY	1 cut(s)	298
RsaI	GTAC	2 cut(s)	41, 450
RsaNI	GTAC	2 cut(s)	40, 449
RseI	CAYNNNNRTG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	10
SaqAI	TTAA	5 cut(s)	207, 333, 441, 471, 802
SatI	GCNGC	5 cut(s)	168, 171, 763, 783, 786
Sau3AI	GATC	2 cut(s)	352, 708
Sau96I	GGNCC	3 cut(s)	227, 298, 537
SduI	GDGCHC	3 cut(s)	102, 262, 469
SetI	ASST	7 cut(s)	127, 303, 307, 333, 340, 478, 795
SfaNI	GCATC	6 cut(s)	29, 101, 442, 595, 785, 787
SinI	GGWCC	2 cut(s)	227, 298
SmiMI	CAYNNNNRTG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	6 cut(s)	347, 481, 508, 660, 688, 712
SsiI	CCGC	5 cut(s)	137, 168, 211, 648, 782
TaaI	ACNGT	2 cut(s)	277, 618
TaqI	TCGA	2 cut(s)	121, 163
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	6 cut(s)	347, 481, 508, 660, 688, 712
TauI	GCSGC	2 cut(s)	170, 785
Tru1I	TTAA	5 cut(s)	207, 333, 441, 471, 802
Tru9I	TTAA	5 cut(s)	207, 333, 441, 471, 802
TscAI	CASTG	1 cut(s)	746
TseI	GCWGC	3 cut(s)	170, 762, 785
TspRI	CASTG	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	227, 298
XapI	RAATTY	2 cut(s)	347, 481
XceI	RCATGY	2 cut(s)	143, 517
Zsp2I	ATGCAT	2 cut(s)	181, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.