Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004989.1

Orthogroup ID

OG0011347

Physical Location & Seq

Genomic Coordinates Forward (+)

8798 .. 11491

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004989.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggagaaagtcagaagaccatcgcacgccggttcttggtacaccgacaaccctaaaaagttagcagaagagcttgaagggtggctcagagagtctgggctcaccaagtctcctgatgtacgaggtgtcattgctccgcatgcaggttattcatattcgggtcgtgctgctgcctatgcatttggcaacattgacccaacaaacattacccgggtgttccttcttggtccatctcatcactattacactccaaagtgtgccgtttcaacagccacagtttacaggacccccattggagacctacctgttgatttggaagtgattgatgagataaaagctactggaaaattcgaaaccatggatattcgtgttgatgaggctgaacatagcatggaaatgcatttaccatatcttgctaaagtttttgaagggcacccagttaaagttgtaccaattttggttggtgctcttaaagctgaagcagaagctatgtatggacagctccttgccaaatatgtagatgatccaaaaaatttcttctctgtgtcgtcggacttttgtcattggggatctcggttcaactacgtgcattatgacaagaaacatggggccatacacagatccattgaggctttggacaggatgggaatggatataatagaaacaggaaatcctgatgcattcaaacagtatctgtcagagtatgataacaccatttgtgggcgccatccaataagtgtttttcttcacatgctgagaaactgctcaacaaacataaagatcaatttcctccgttatgagcagtcaagtcagtgcaaaactatgagggacagcagtgtaagctatgcatccgcagcagcaaagttggatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Memo

Protein Analysis

291

Amino Acids

32.69

Weight (kDa)

6.5

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25280
fragaria_vesca	FvH4_2g28610
malus_domestica	MD08G1152600.v1.1 MD15G1129200.v1.1
prunus_persica	Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1 Prupe.1G484800_v2.0.a1
pyrus_communis	pycom08g13130 pycom15g11640
rosa_chinensis	RchiOBHm_Chr6g0297381
rosa_laevigata	RLG00000011604
rosa_multiflora	Rmu_sc0004989.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170570
rosa_rugosa	Rorug06G0271200
rosa_samantha	Rh6AG382700 Rh6BG391000 Rh6CG395900
rosa_wichuraiana	Rw6G033330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	432, 723
AciI	CCGC	2 cut(s)	137, 852
AclWI	GGATC	3 cut(s)	518, 577, 615
AcsI	RAATTY	2 cut(s)	347, 532
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	724
AfaI	GTAC	3 cut(s)	41, 120, 450
AfiI	CCNNNNNNNGG	3 cut(s)	36, 143, 720
AgsI	TTSAA	5 cut(s)	77, 267, 428, 580, 685
AluBI	AGCT	6 cut(s)	73, 338, 476, 488, 502, 843
AluI	AGCT	6 cut(s)	73, 338, 476, 488, 502, 843
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	114, 291
AlwI	GGATC	3 cut(s)	518, 577, 615
AlwNI	CAGNNNCTG	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	167, 170, 854, 857
ApoI	RAATTY	2 cut(s)	347, 532
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	227, 285, 609
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	227, 285
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	2 cut(s)	432, 723
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	4 cut(s)	154, 157, 866, 869
BccI	CCATC	4 cut(s)	28, 238, 637, 735
BceAI	ACGGC	1 cut(s)	245
BcnI	CCSGG	2 cut(s)	211, 212
BcoDI	GTCTC	2 cut(s)	114, 291
BfoI	RGCGCY	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	4 cut(s)	168, 171, 855, 858
BlsI	GCNGC	4 cut(s)	169, 172, 856, 859
Bme1390I	CCNGG	2 cut(s)	211, 212
Bme18I	GGWCC	2 cut(s)	227, 285
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	3 cut(s)	227, 285, 609
BmiI	GGNNCC	4 cut(s)	287, 434, 610, 725
BmrFI	CCNGG	2 cut(s)	211, 212
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	667, 857, 859
BmuI	ACTGGG	1 cut(s)	431
BoxI	GACNNNNGTC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	351
BpuMI	CCSGG	2 cut(s)	211, 212
BsaAI	YACGTR	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	724
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	210, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 143, 720
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	346, 437
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	210, 357
BseGI	GGATG	4 cut(s)	648, 727, 848, 874
BseLI	CCNNNNNNNGG	3 cut(s)	36, 143, 720
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	100, 746
BseNI	ACTGG	2 cut(s)	346, 437
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	4 cut(s)	154, 157, 866, 869
BshFI	GGCC	1 cut(s)	611
BshNI	GGYRCC	2 cut(s)	432, 723
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	30, 211
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	3 cut(s)	36, 143, 720
BsmAI	GTCTC	2 cut(s)	114, 291
BsmFI	GGGAC	1 cut(s)	842
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	1 cut(s)	611
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	3 cut(s)	102, 435, 469
Bsp143I	GATC	4 cut(s)	523, 569, 620, 780
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	137, 852
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	2 cut(s)	99, 747
BspLI	GGNNCC	4 cut(s)	287, 434, 610, 725
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	3 cut(s)	518, 577, 615
BspQI	GCTCTTC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	2 cut(s)	432, 723
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	346, 437
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	210, 357
BssMI	GATC	4 cut(s)	523, 569, 620, 780
BssNI	GRCGYC	1 cut(s)	724
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	277, 690
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	27, 141
BstDEI	CTNAG	2 cut(s)	86, 755
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	4 cut(s)	648, 727, 848, 874
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	4 cut(s)	526, 572, 623, 783
BstMAI	GTCTC	2 cut(s)	114, 291
BstMBI	GATC	4 cut(s)	523, 569, 620, 780
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 176, 473, 840, 854
BstNSI	RCATGY	2 cut(s)	143, 754
BstPAI	GACNNNNGTC	1 cut(s)	558
BstSCI	CCNGG	2 cut(s)	209, 210
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	4 cut(s)	154, 157, 866, 869
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	569, 620
BstYI	RGATCY	2 cut(s)	569, 620
BsuRI	GGCC	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	4 cut(s)	648, 727, 848, 874
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	818, 841
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	27, 141
CaiI	CAGNNNCTG	1 cut(s)	694
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	227, 285, 609
Cfr9I	CCCGGG	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	40, 119, 449
CviAII	CATG	5 cut(s)	140, 358, 391, 605, 751
CviQI	GTAC	3 cut(s)	40, 119, 449
DdeI	CTNAG	2 cut(s)	86, 755
DinI	GGCGCC	1 cut(s)	725
DpnI	GATC	4 cut(s)	525, 571, 622, 782
DpnII	GATC	4 cut(s)	523, 569, 620, 780
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	227, 285
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	357
EcoT22I	ATGCAT	4 cut(s)	181, 402, 682, 850
EcoT38I	GRGCYC	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	725
EheI	GGCGCC	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	143, 361, 394, 608, 754
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	5 cut(s)	139, 357, 390, 604, 750
Fnu4HI	GCNGC	4 cut(s)	168, 171, 855, 858
FokI	GGATG	3 cut(s)	655, 714, 835
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	168, 171, 855, 858
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	4 cut(s)	168, 171, 855, 858
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	2 cut(s)	30, 211
HhaI	GCGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	724
Hin1II	CATG	5 cut(s)	143, 361, 394, 608, 754
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	30, 211
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	42, 280
Hpy188I	TCNGA	4 cut(s)	14, 89, 553, 700
Hpy188III	TCNNGA	2 cut(s)	113, 674
Hpy8I	GTNNAC	2 cut(s)	42, 280
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	71, 230, 422
HpyCH4III	ACNGT	2 cut(s)	277, 690
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	7 cut(s)	143, 179, 400, 589, 680, 816, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 176, 473, 840, 854
HpyF3I	CTNAG	2 cut(s)	86, 755
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	724
Hsp92II	CATG	5 cut(s)	143, 361, 394, 608, 754
HspAI	GCGC	1 cut(s)	724
KasI	GGCGCC	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	523, 569, 620, 780
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	139, 507
Lsp1109I	GCAGC	4 cut(s)	154, 157, 866, 869
LweI	GCATC	3 cut(s)	667, 857, 859
MaeII	ACGT	1 cut(s)	585
MalI	GATC	4 cut(s)	525, 571, 622, 782
MboI	GATC	4 cut(s)	523, 569, 620, 780
MboII	GAAGA	4 cut(s)	27, 80, 529, 737
MflI	RGATCY	2 cut(s)	569, 620
MhlI	GDGCHC	3 cut(s)	102, 435, 469
MluCI	AATT	4 cut(s)	347, 453, 532, 784
Mly113I	GGCGCC	1 cut(s)	724
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	531, 846
MnlI	CCTC	5 cut(s)	116, 370, 622, 800, 819
Mph1103I	ATGCAT	4 cut(s)	181, 402, 682, 850
MseI	TTAA	2 cut(s)	441, 471
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	2 cut(s)	30, 211
MspR9I	CCNGG	2 cut(s)	211, 212
Mva1269I	GAATGC	1 cut(s)	680
MwoI	GCNNNNNNNGC	5 cut(s)	140, 176, 473, 840, 854
NarI	GGCGCC	1 cut(s)	724
NciI	CCSGG	2 cut(s)	211, 212
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	523, 569, 620, 780
NlaIII	CATG	5 cut(s)	143, 361, 394, 608, 754
NlaIV	GGNNCC	4 cut(s)	287, 434, 610, 725
NsiI	ATGCAT	4 cut(s)	181, 402, 682, 850
NspI	RCATGY	2 cut(s)	143, 754
NspV	TTCGAA	1 cut(s)	351
PaeI	GCATGC	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	680
PkrI	GCNGC	4 cut(s)	169, 172, 856, 859
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	285
PspN4I	GGNNCC	4 cut(s)	287, 434, 610, 725
PspPI	GGNCC	3 cut(s)	227, 285, 609
PspPPI	RGGWCCY	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	569, 620
RsaI	GTAC	3 cut(s)	41, 120, 450
RsaNI	GTAC	3 cut(s)	40, 119, 449
RseI	CAYNNNNRTG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	441, 471
SatI	GCNGC	4 cut(s)	168, 171, 855, 858
Sau3AI	GATC	4 cut(s)	523, 569, 620, 780
Sau96I	GGNCC	3 cut(s)	227, 285, 609
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	211, 212
SduI	GDGCHC	3 cut(s)	102, 435, 469
SfaNI	GCATC	3 cut(s)	667, 857, 859
SfoI	GGCGCC	1 cut(s)	725
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	2 cut(s)	227, 285
SmaI	CCCGGG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	4 cut(s)	347, 453, 532, 784
SsiI	CCGC	2 cut(s)	137, 852
SspDI	GGCGCC	1 cut(s)	723
StyD4I	CCNGG	2 cut(s)	209, 210
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	277, 690
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	351
TasI	AATT	4 cut(s)	347, 453, 532, 784
Tru1I	TTAA	2 cut(s)	441, 471
Tru9I	TTAA	2 cut(s)	441, 471
TscAI	CASTG	2 cut(s)	818, 841
TseI	GCWGC	4 cut(s)	167, 170, 854, 857
TspDTI	ATGAA	1 cut(s)	141
TspGWI	ACGGA	1 cut(s)	782
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	2 cut(s)	818, 841
VpaK11BI	GGWCC	2 cut(s)	227, 285
XapI	RAATTY	2 cut(s)	347, 532
XceI	RCATGY	2 cut(s)	143, 754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmaI	CCCGGG	1 cut(s)	210
Zsp2I	ATGCAT	4 cut(s)	181, 402, 682, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.