RLG00000011604

Memo-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011347
Physical Location & Seq
Reverse (-)
10933912 .. 10936565
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011604

Sequence Viewer

Length: 876 bp
ATGGAGAAAGTCAGAAGACCATCGCACGCCGGTTCTTGGTACACCGACAATCCTAAAAAGTTAGCAGAAGAGCTTGAAGGATGGCTTAGAGAGTCTGGGCTCACCAAGTCTCCTGATGTACGAGGTGTCATTGCTCCGCATGCAGGTTATTCATATTCGGGTCGTGCTGCTGCCTATGCATTTGGCAACATTGACCCAACAAACATTACCCGGGTGTTCCTTCTTGGTCCATCTCATCACTACTACACTCCAAAGTGTGCCGTTTCAACAGCCACAGTTTACAGGACCCCCATTGGAGACCTACCTGTTGATTTGGAAGTGATTGATGAGCTAAAAGCTACTGGAAAATTCGAAACCATGGATATTCGTGTTGATGAGGCTGAACATAGCATGGAAATGCATTTACCATATCTTGCTAAAGTTTTTGAAGGGCACCCAGTTAAAGTTGTACCAATTTTGGTTGGTGCTCTTAAAGCTGAAGCAGAAGCTATGTATGGACAGCTCCTTGCCAAATATGTAGATGATCCAAAAAATTTCTTCTCTGTGTCGTCGGACTTTTGTCATTGGGGATCTCGGTTCAACTACGTGCATTATGACAAGAAACATGGGGCCATACACAGATCCATTGAGGCTTTGGACAGGATGGGAATGGATATAATAGAAACAGGAAATCCTGATGCATTCAAACAGTATCTGTCAGAGTATGATAACACCATTTGTGGGCGCCATCCAATAAGCGTTTTTCTTCATATGCTGAGAAACTGCTCAACAAACATAAAGATCAATTTCCTCCGTTATGAGCAGTCAAGTCAGTGCAAAACTATGAGGGACAGCAGTGTAAGCTACGCATCCGCAGCAGCAAAGTTGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Memo

Protein Analysis

292

Amino Acids

32.69

Weight (kDa)

6.5

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Memo PF01875 7 - 285 1.7e-80 Memo-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 432, 723
AciI CCGC 2 cut(s) 137, 852
AclWI GGATC 3 cut(s) 518, 577, 615
AcsI RAATTY 2 cut(s) 347, 532
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 3 cut(s) 41, 120, 450
AfiI CCNNNNNNNGG 3 cut(s) 36, 143, 720
AgsI TTSAA 5 cut(s) 77, 267, 428, 580, 685
AluBI AGCT 7 cut(s) 73, 331, 338, 476, 488, 502, 843
AluI AGCT 7 cut(s) 73, 331, 338, 476, 488, 502, 843
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 2 cut(s) 114, 291
AlwI GGATC 3 cut(s) 518, 577, 615
AlwNI CAGNNNCTG 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 4 cut(s) 167, 170, 854, 857
ApoI RAATTY 2 cut(s) 347, 532
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 3 cut(s) 227, 285, 609
AsuC2I CCSGG 2 cut(s) 211, 212
AsuHPI GGTGA 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 351
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 2 cut(s) 227, 285
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 2 cut(s) 432, 723
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 4 cut(s) 154, 157, 866, 869
BccI CCATC 5 cut(s) 28, 75, 238, 637, 735
BceAI ACGGC 1 cut(s) 245
BcnI CCSGG 2 cut(s) 211, 212
BcoDI GTCTC 2 cut(s) 114, 291
BfoI RGCGCY 1 cut(s) 727
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 4 cut(s) 168, 171, 855, 858
BlsI GCNGC 4 cut(s) 169, 172, 856, 859
Bme1390I CCNGG 2 cut(s) 211, 212
Bme18I GGWCC 2 cut(s) 227, 285
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 227, 285, 609
BmiI GGNNCC 4 cut(s) 287, 434, 610, 725
BmrFI CCNGG 2 cut(s) 211, 212
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 3 cut(s) 667, 857, 859
BmuI ACTGGG 1 cut(s) 431
BoxI GACNNNNGTC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 351
BpuMI CCSGG 2 cut(s) 211, 212
BsaAI YACGTR 1 cut(s) 586
BsaHI GRCGYC 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 210, 357
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 143, 720
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 346, 437
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 210, 357
BseGI GGATG 5 cut(s) 86, 648, 727, 848, 874
BseLI CCNNNNNNNGG 3 cut(s) 36, 143, 720
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 2 cut(s) 346, 437
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 4 cut(s) 154, 157, 866, 869
BshFI GGCC 1 cut(s) 611
BshNI GGYRCC 2 cut(s) 432, 723
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 30, 211
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 3 cut(s) 36, 143, 720
BsmAI GTCTC 2 cut(s) 114, 291
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 210
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 3 cut(s) 102, 435, 469
Bsp143I GATC 4 cut(s) 523, 569, 620, 780
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 137, 852
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 747
BspLI GGNNCC 4 cut(s) 287, 434, 610, 725
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 3 cut(s) 518, 577, 615
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 351
BspT107I GGYRCC 2 cut(s) 432, 723
BspTNI GGTCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 346, 437
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 210, 357
BssMI GATC 4 cut(s) 523, 569, 620, 780
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 277, 690
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 724
BstBAI YACGTR 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 27, 141
BstDEI CTNAG 2 cut(s) 86, 755
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 5 cut(s) 86, 648, 727, 848, 874
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 4 cut(s) 526, 572, 623, 783
BstMAI GTCTC 2 cut(s) 114, 291
BstMBI GATC 4 cut(s) 523, 569, 620, 780
BstMWI GCNNNNNNNGC 5 cut(s) 140, 176, 473, 840, 854
BstNSI RCATGY 1 cut(s) 143
BstPAI GACNNNNGTC 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 209, 210
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 154, 157, 866, 869
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 569, 620
BstYI RGATCY 2 cut(s) 569, 620
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 5 cut(s) 86, 648, 727, 848, 874
BtsI GCAGTG 1 cut(s) 841
BtsIMutI CAGTG 2 cut(s) 818, 841
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 27, 141
CaiI CAGNNNCTG 1 cut(s) 694
CfoI GCGC 1 cut(s) 726
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 227, 285, 609
Cfr9I CCCGGG 1 cut(s) 210
Csp6I GTAC 3 cut(s) 40, 119, 449
CviAII CATG 4 cut(s) 140, 358, 391, 605
CviQI GTAC 3 cut(s) 40, 119, 449
DdeI CTNAG 2 cut(s) 86, 755
DinI GGCGCC 1 cut(s) 725
DpnI GATC 4 cut(s) 525, 571, 622, 782
DpnII GATC 4 cut(s) 523, 569, 620, 780
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 227, 285
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 3 cut(s) 181, 402, 682
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 4 cut(s) 143, 361, 394, 608
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 842
FatI CATG 4 cut(s) 139, 357, 390, 604
FauNDI CATATG 1 cut(s) 750
Fnu4HI GCNGC 4 cut(s) 168, 171, 855, 858
FokI GGATG 4 cut(s) 93, 655, 714, 835
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 168, 171, 855, 858
GlaI GCGC 1 cut(s) 725
GluI GCNGC 4 cut(s) 168, 171, 855, 858
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 1 cut(s) 611
HapII CCGG 2 cut(s) 30, 211
HhaI GCGC 1 cut(s) 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 4 cut(s) 143, 361, 394, 608
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 30, 211
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 42, 280
Hpy188I TCNGA 3 cut(s) 14, 553, 700
Hpy188III TCNNGA 2 cut(s) 113, 674
Hpy8I GTNNAC 2 cut(s) 42, 280
Hpy99I CGWCG 1 cut(s) 553
HpyAV CCTTC 3 cut(s) 71, 230, 422
HpyCH4III ACNGT 2 cut(s) 277, 690
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 6 cut(s) 143, 179, 400, 589, 680, 816
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 176, 473, 840, 854
HpyF3I CTNAG 2 cut(s) 86, 755
HpySE526I ACGT 1 cut(s) 585
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 4 cut(s) 143, 361, 394, 608
HspAI GCGC 1 cut(s) 724
KasI GGCGCC 1 cut(s) 723
Kzo9I GATC 4 cut(s) 523, 569, 620, 780
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 139, 507
Lsp1109I GCAGC 4 cut(s) 154, 157, 866, 869
LweI GCATC 3 cut(s) 667, 857, 859
MaeII ACGT 1 cut(s) 585
MalI GATC 4 cut(s) 525, 571, 622, 782
MboI GATC 4 cut(s) 523, 569, 620, 780
MboII GAAGA 4 cut(s) 27, 80, 529, 737
MflI RGATCY 2 cut(s) 569, 620
MhlI GDGCHC 3 cut(s) 102, 435, 469
MluCI AATT 4 cut(s) 347, 453, 532, 784
Mly113I GGCGCC 1 cut(s) 724
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 531, 846
MnlI CCTC 5 cut(s) 116, 370, 622, 800, 819
Mph1103I ATGCAT 3 cut(s) 181, 402, 682
MseI TTAA 2 cut(s) 441, 471
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 30, 211
MspR9I CCNGG 2 cut(s) 211, 212
Mva1269I GAATGC 1 cut(s) 680
MwoI GCNNNNNNNGC 5 cut(s) 140, 176, 473, 840, 854
NarI GGCGCC 1 cut(s) 724
NciI CCSGG 2 cut(s) 211, 212
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 750
NdeII GATC 4 cut(s) 523, 569, 620, 780
NlaIII CATG 4 cut(s) 143, 361, 394, 608
NlaIV GGNNCC 4 cut(s) 287, 434, 610, 725
NsiI ATGCAT 3 cut(s) 181, 402, 682
NspI RCATGY 1 cut(s) 143
NspV TTCGAA 1 cut(s) 351
PaeI GCATGC 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 63
PctI GAATGC 1 cut(s) 680
PkrI GCNGC 4 cut(s) 169, 172, 856, 859
PleI GAGTC 1 cut(s) 100
PluTI GGCGCC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 285
PshAI GACNNNNGTC 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 285
PspN4I GGNNCC 4 cut(s) 287, 434, 610, 725
PspPI GGNCC 3 cut(s) 227, 285, 609
PspPPI RGGWCCY 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 569, 620
RsaI GTAC 3 cut(s) 41, 120, 450
RsaNI GTAC 3 cut(s) 40, 119, 449
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 441, 471
SatI GCNGC 4 cut(s) 168, 171, 855, 858
Sau3AI GATC 4 cut(s) 523, 569, 620, 780
Sau96I GGNCC 3 cut(s) 227, 285, 609
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 211, 212
SduI GDGCHC 3 cut(s) 102, 435, 469
SfaNI GCATC 3 cut(s) 667, 857, 859
SfoI GGCGCC 1 cut(s) 725
SfuI TTCGAA 1 cut(s) 351
SinI GGWCC 2 cut(s) 227, 285
SmaI CCCGGG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 395
SphI GCATGC 1 cut(s) 143
Sse9I AATT 4 cut(s) 347, 453, 532, 784
SsiI CCGC 2 cut(s) 137, 852
SspDI GGCGCC 1 cut(s) 723
StyD4I CCNGG 2 cut(s) 209, 210
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 277, 690
TaiI ACGT 1 cut(s) 588
TaqI TCGA 1 cut(s) 351
TasI AATT 4 cut(s) 347, 453, 532, 784
Tru1I TTAA 2 cut(s) 441, 471
Tru9I TTAA 2 cut(s) 441, 471
TscAI CASTG 2 cut(s) 818, 841
TseI GCWGC 4 cut(s) 167, 170, 854, 857
TspDTI ATGAA 2 cut(s) 141, 737
TspGWI ACGGA 1 cut(s) 782
TspMI CCCGGG 1 cut(s) 210
TspRI CASTG 2 cut(s) 818, 841
VpaK11BI GGWCC 2 cut(s) 227, 285
XapI RAATTY 2 cut(s) 347, 532
XceI RCATGY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 210
Zsp2I ATGCAT 3 cut(s) 181, 402, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.