Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Reverse (-)

22830121 .. 22832763

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGCAAGACCAAGCCACGAGCTCTCTTGCTGCGAGCTCTCTGCCTTCCAGCAGTGAGAGGTCTTCCAGCTCTGCATTCCAGCTCGAAGTTAAAGAAGGCCTGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAATCGGCCGGAGCATCGGTATCAGGCAGGGAGGCCGGTTCGTTAGCCGGTCCAGATCGGGTCCAAGTGGCAGGTGAGAGCCAGAGAAAGAGGGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGTTGAAGAGGTTGTTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAGAAGGCGTACTTGAGTGACTTGGAAGTTAGAGTGAAAGACTTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTCTCTACTTTGCAGAATGAGAATCAGATGCTTAGACATATATTGAAGAACACAACAGCAAGCCGGCGAGGAGGCGGCGGTGCAAATGCTGAGGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

167

Amino Acids

18.03

Weight (kDa)

9.56

Isoelectric Point (pI)

68.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	87 - 147	2.9e-14	bZIP transcription factor
bZIP_2	PF07716	87 - 140	6.1e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	3 cut(s)	144, 474, 477
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	277, 445
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	7 cut(s)	24, 39, 72, 85, 254, 305, 388
AluI	AGCT	7 cut(s)	24, 39, 72, 85, 254, 305, 388
Alw21I	GWGCWC	2 cut(s)	26, 41
AoxI	GGCC	3 cut(s)	100, 153, 180
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	197, 208
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	197, 208
BanII	GRGCYC	2 cut(s)	26, 41
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BauI	CACGAG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	26, 41
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	33, 145, 475
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	34, 146, 476
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	197, 208
BmgT120I	GGNCC	2 cut(s)	197, 208
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	170, 417
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	3 cut(s)	182, 194, 462
BseBI	CCWGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	320, 375, 480
BseRI	GAGGAG	2 cut(s)	131, 483
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	102, 155, 182
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	26, 41
BsiSI	CCGG	5 cut(s)	134, 156, 183, 195, 463
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	102, 155, 182
Bsp1286I	GDGCHC	2 cut(s)	26, 41
Bsp143I	GATC	3 cut(s)	120, 202, 494
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	144, 474, 477
BspANI	GGCC	3 cut(s)	102, 155, 182
BspCNI	CTCAG	3 cut(s)	319, 376, 481
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	209
BsrFI	RCCGGY	3 cut(s)	182, 194, 462
BssAI	RCCGGY	3 cut(s)	182, 194, 462
BssMI	GATC	3 cut(s)	120, 202, 494
BssSI	CACGAG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	4 cut(s)	37, 312, 460, 464
BstDEI	CTNAG	5 cut(s)	306, 384, 431, 489, 498
BstKTI	GATC	3 cut(s)	123, 205, 497
BstMBI	GATC	3 cut(s)	120, 202, 494
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	102, 155, 182
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	37, 312, 460, 464
Cfr10I	RCCGGY	3 cut(s)	182, 194, 462
Cfr13I	GGNCC	2 cut(s)	197, 208
Csp6I	GTAC	1 cut(s)	334
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	5 cut(s)	306, 384, 431, 489, 498
DpnI	GATC	3 cut(s)	122, 204, 496
DpnII	GATC	3 cut(s)	120, 202, 494
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	2 cut(s)	24, 39
EclXI	CGGCCG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	102
Eco24I	GRGCYC	2 cut(s)	26, 41
Eco47I	GGWCC	2 cut(s)	197, 208
Eco52I	CGGCCG	1 cut(s)	153
Eco53kI	GAGCTC	2 cut(s)	24, 39
EcoICRI	GAGCTC	2 cut(s)	24, 39
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	26, 41
FaiI	YATR	2 cut(s)	438, 440
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
Fnu4HI	GCNGC	3 cut(s)	33, 145, 475
FriOI	GRGCYC	2 cut(s)	26, 41
Fsp4HI	GCNGC	3 cut(s)	33, 145, 475
GluI	GCNGC	3 cut(s)	33, 145, 475
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	102, 155, 182
HapII	CCGG	5 cut(s)	134, 156, 183, 195, 463
HinfI	GANTC	2 cut(s)	149, 421
HpaII	CCGG	5 cut(s)	134, 156, 183, 195, 463
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	385, 426
Hpy188III	TCNNGA	2 cut(s)	124, 200
HpyAV	CCTTC	3 cut(s)	57, 92, 322
HpyCH4V	TGCA	4 cut(s)	7, 77, 412, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	5 cut(s)	306, 384, 431, 489, 498
KroI	GCCGGC	1 cut(s)	462
KroNI	GCCGGC	1 cut(s)	464
Kzo9I	GATC	3 cut(s)	120, 202, 494
LmnI	GCTCC	2 cut(s)	158, 370
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	170, 417
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	122, 204, 496
MboI	GATC	3 cut(s)	120, 202, 494
MboII	GAAGA	6 cut(s)	57, 255, 289, 337, 388, 457
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	26, 41
MluCI	AATT	1 cut(s)	379
MroNI	GCCGGC	1 cut(s)	462
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	5 cut(s)	134, 156, 183, 195, 463
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	311
NaeI	GCCGGC	1 cut(s)	464
NdeII	GATC	3 cut(s)	120, 202, 494
NgoMIV	GCCGGC	1 cut(s)	462
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	102
PctI	GAATGC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	149, 421
PkrI	GCNGC	3 cut(s)	34, 146, 476
Psp124BI	GAGCTC	2 cut(s)	26, 41
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	197, 208
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacI	GAGCTC	2 cut(s)	26, 41
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	33, 145, 475
Sau3AI	GATC	3 cut(s)	120, 202, 494
Sau96I	GGNCC	2 cut(s)	197, 208
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	26, 41
SfaNI	GCATC	2 cut(s)	170, 417
SinI	GGWCC	2 cut(s)	197, 208
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	379
SseBI	AGGCCT	1 cut(s)	102
SsiI	CCGC	3 cut(s)	144, 474, 477
SstI	GAGCTC	2 cut(s)	26, 41
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	102
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	379
TauI	GCSGC	2 cut(s)	147, 477
TfiI	GAWTC	2 cut(s)	149, 421
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	341
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	197, 208
XapI	RAATTY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.