Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Forward (+)

10836524 .. 10838736

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCAAGAGCAGGCGACGAGCTCCCTCGCTGCGAGCTCTCTGCCTTCCAGCAGCGAAAGGTCTTCGAGCTCTGCATTCCATCTTGAAGTTAAAGAAGGCATGGAAAGCGACGAGGAGATCGGAAGAGTGCCGGAAATCGGCGGCGAATCGGCAGGAGGGTCGGCTTCCGCCCGGGAAAACGGTTCGTTGGCCGGTCCAGACCAGGTCCAAACGGCTGGTGAGAGTCAGAGAAAGAGAGGAAGAAATCCAGCAGACAAGGAAAGCAAGCGGCTGAAGAGGTTGTTGAGGAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGAATGATTTGGAAGTGAGAGTCAAAGAATTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTTTCCACTTTGCAGAATGAGAATCAGATGCTTAGACATATATTGAAGAACACAACGGCAAGCCGGAGAGGAGCAGATGGTAGTGCAAATGCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

165

Amino Acids

17.92

Weight (kDa)

8.01

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	141, 168, 268, 488
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	86, 337, 442
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	21, 36, 69, 385
AluI	AGCT	4 cut(s)	21, 36, 69, 385
Alw21I	GWGCWC	3 cut(s)	23, 38, 71
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	29, 51
ApoI	RAATTY	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	194, 205
AsuC2I	CCSGG	2 cut(s)	172, 173
AsuHPI	GGTGA	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	194, 205
BanII	GRGCYC	3 cut(s)	23, 38, 71
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	3 cut(s)	23, 38, 71
BbvI	GCAGC	2 cut(s)	16, 63
BccI	CCATC	2 cut(s)	87, 467
BceAI	ACGGC	2 cut(s)	228, 468
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 141, 175
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	172, 173
BisI	GCNGC	4 cut(s)	30, 52, 142, 269
BlsI	GCNGC	4 cut(s)	31, 53, 143, 270
Bme1390I	CCNGG	3 cut(s)	172, 173, 203
Bme18I	GGWCC	2 cut(s)	194, 205
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	194, 205
BmrFI	CCNGG	3 cut(s)	172, 173, 203
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	172, 173
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	128, 480
BseXI	GCAGC	2 cut(s)	16, 63
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	3 cut(s)	23, 38, 71
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	131, 172, 192, 460
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	23, 38, 71
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	141, 168, 268, 488
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	118, 269
BstC8I	GCNNGC	5 cut(s)	12, 34, 266, 309, 457
BstDEI	CTNAG	2 cut(s)	381, 428
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 308
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	170, 171, 201
BstV1I	GCAGC	2 cut(s)	16, 63
BstV2I	GAAGAC	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	191
Cac8I	GCNNGC	5 cut(s)	12, 34, 266, 309, 457
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	194, 205
Cfr9I	CCCGGG	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	201
CviAII	CATG	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	381, 428
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	118, 269
EarI	CTCTTC	2 cut(s)	118, 269
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	3 cut(s)	21, 36, 69
Eco24I	GRGCYC	3 cut(s)	23, 38, 71
Eco47I	GGWCC	2 cut(s)	194, 205
Eco53kI	GAGCTC	3 cut(s)	21, 36, 69
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	171
EcoICRI	GAGCTC	3 cut(s)	21, 36, 69
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	3 cut(s)	23, 38, 71
FaeI	CATG	1 cut(s)	103
FaiI	YATR	4 cut(s)	101, 331, 435, 437
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	4 cut(s)	30, 52, 142, 269
FriOI	GRGCYC	3 cut(s)	23, 38, 71
Fsp4HI	GCNGC	4 cut(s)	30, 52, 142, 269
GluI	GCNGC	4 cut(s)	30, 52, 142, 269
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	4 cut(s)	131, 172, 192, 460
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	4 cut(s)	146, 223, 354, 418
HpaII	CCGG	4 cut(s)	131, 172, 192, 460
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	4 cut(s)	122, 228, 382, 423
Hpy188III	TCNNGA	2 cut(s)	83, 197
Hpy99I	CGWCG	2 cut(s)	19, 113
HpyAV	CCTTC	3 cut(s)	54, 89, 319
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	4, 74, 409, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 308
HpyF3I	CTNAG	2 cut(s)	381, 428
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	26, 367, 467
Lsp1109I	GCAGC	2 cut(s)	16, 63
LweI	GCATC	1 cut(s)	414
MabI	ACCWGGT	1 cut(s)	201
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	7 cut(s)	54, 135, 252, 286, 334, 385, 454
MhlI	GDGCHC	3 cut(s)	23, 38, 71
MluCI	AATT	2 cut(s)	362, 376
MlyI	GAGTC	2 cut(s)	232, 363
MnlI	CCTC	9 cut(s)	35, 106, 149, 230, 270, 279, 312, 387, 458
MseI	TTAA	1 cut(s)	90
MspI	CCGG	4 cut(s)	131, 172, 192, 460
MspR9I	CCNGG	3 cut(s)	172, 173, 203
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	105, 308
NciI	CCSGG	2 cut(s)	172, 173
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	103
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	146, 418
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	31, 53, 143, 270
PleI	GAGTC	2 cut(s)	231, 362
PpsI	GAGTC	2 cut(s)	231, 362
Psp124BI	GAGCTC	3 cut(s)	23, 38, 71
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	194, 205
PsyI	GACNNNGTC	1 cut(s)	203
SacI	GAGCTC	3 cut(s)	23, 38, 71
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	30, 52, 142, 269
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	194, 205
SchI	GAGTC	2 cut(s)	232, 363
ScrFI	CCNGG	3 cut(s)	172, 173, 203
SduI	GDGCHC	3 cut(s)	23, 38, 71
SetI	ASST	7 cut(s)	23, 38, 62, 71, 207, 281, 387
SexAI	ACCWGGT	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	2 cut(s)	194, 205
SmaI	CCCGGG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	362, 376
SsiI	CCGC	4 cut(s)	141, 168, 268, 488
SstI	GAGCTC	3 cut(s)	23, 38, 71
StyD4I	CCNGG	3 cut(s)	170, 171, 201
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	362, 376
TauI	GCSGC	2 cut(s)	144, 271
TfiI	GAWTC	2 cut(s)	146, 418
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	2 cut(s)	29, 51
TspMI	CCCGGG	1 cut(s)	171
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	194, 205
XapI	RAATTY	1 cut(s)	376
XmaI	CCCGGG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.