Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Reverse (-)

59004445 .. 59006417

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG404300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGCAAGACCAGGCGACCAGCTCTCTTGCCGCCAGCTCTCTGCCTTCGAGCAGTGAGAGGTCTTCCAGCTCTGCATTCCAGCTCGAAGTTAAAGAAGGCATGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAATCAGCCGGAGCATCGGTCTCTGGCAGGGAAGCCGGTTCGGTGGCCGGTCCAGACCGGGTCCAAGTGGCAGCTGACCAACGAAAGAGGGGAAGAAGCGCAGCTGACAAGGAAAGCAAGAGGCTGAAGAGGTTGTTAAGGAACAGAGTCTCTGCTCAGCAAGCGAGGGAAAGGAAGAAGGCATACTTGAGTGACTTGGAAGTTAGAGTGAAAGACTTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTCTCTACTTTGCAGAATGAGAATCAGATGCTTAGACATATATTGAAGAACACAACAGCAAGCCGGCGAGGAGGTAGTGGTGCAAATGCTGATGGATCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

166

Amino Acids

18.05

Weight (kDa)

9.56

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	86 - 146	2.9e-14	bZIP transcription factor
bZIP_2	PF07716	86 - 139	5.3e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	33, 144
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	7 cut(s)	24, 39, 72, 85, 221, 251, 385
AluI	AGCT	7 cut(s)	24, 39, 72, 85, 221, 251, 385
Alw26I	GTCTC	2 cut(s)	172, 301
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	218, 248
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	197, 208
AsuC2I	CCSGG	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	197, 208
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	230, 260
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	172, 301
BisI	GCNGC	4 cut(s)	33, 145, 219, 249
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	4 cut(s)	34, 146, 220, 250
Bme1390I	CCNGG	2 cut(s)	14, 206
Bme18I	GGWCC	2 cut(s)	197, 208
BmgT120I	GGNCC	2 cut(s)	197, 208
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	14, 206
BmsI	GCATC	2 cut(s)	170, 414
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	3 cut(s)	182, 194, 459
BseBI	CCWGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	317, 372
BseRI	GAGGAG	2 cut(s)	131, 480
BseXI	GCAGC	2 cut(s)	230, 260
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	172, 301
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	120, 491
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	2 cut(s)	33, 144
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	316, 373
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	172
BsrFI	RCCGGY	3 cut(s)	182, 194, 459
BssAI	RCCGGY	3 cut(s)	182, 194, 459
BssMI	GATC	2 cut(s)	120, 491
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	37, 309, 457, 461
BstDEI	CTNAG	3 cut(s)	303, 381, 428
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	123, 494
BstMAI	GTCTC	2 cut(s)	172, 301
BstMBI	GATC	2 cut(s)	120, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 204
BstV1I	GCAGC	2 cut(s)	230, 260
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	4 cut(s)	37, 309, 457, 461
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	3 cut(s)	182, 194, 459
Cfr13I	GGNCC	2 cut(s)	197, 208
CviAII	CATG	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	303, 381, 428
DpnI	GATC	2 cut(s)	122, 493
DpnII	GATC	2 cut(s)	120, 491
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	197, 208
Eco57I	CTGAAG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	104, 331, 435, 437
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	33, 145, 219, 249
Fsp4HI	GCNGC	4 cut(s)	33, 145, 219, 249
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	4 cut(s)	33, 145, 219, 249
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	149, 294, 418
HpaII	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
Hpy188I	TCNGA	2 cut(s)	382, 423
Hpy188III	TCNNGA	2 cut(s)	124, 200
HpyAV	CCTTC	3 cut(s)	57, 92, 319
HpyCH4V	TGCA	4 cut(s)	7, 77, 409, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	303, 381, 428
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	459
KroNI	GCCGGC	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	120, 491
LmnI	GCTCC	2 cut(s)	158, 367
Lsp1109I	GCAGC	2 cut(s)	230, 260
LweI	GCATC	2 cut(s)	170, 414
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	2 cut(s)	122, 493
MboI	GATC	2 cut(s)	120, 491
MboII	GAAGA	6 cut(s)	57, 252, 286, 334, 385, 454
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	54, 109, 228, 261, 270, 306, 387, 458, 461
MroNI	GCCGGC	1 cut(s)	459
MseI	TTAA	2 cut(s)	93, 284
MspA1I	CMGCKG	2 cut(s)	221, 251
MspI	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
MspR9I	CCNGG	2 cut(s)	14, 206
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	308
NaeI	GCCGGC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	120, 491
NgoMIV	GCCGGC	1 cut(s)	459
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	149, 418
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	34, 146, 220, 250
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	197, 208
PsuI	RGATCY	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	2 cut(s)	221, 251
SaqAI	TTAA	2 cut(s)	93, 284
SatI	GCNGC	4 cut(s)	33, 145, 219, 249
Sau3AI	GATC	2 cut(s)	120, 491
Sau96I	GGNCC	2 cut(s)	197, 208
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	14, 206
SfaNI	GCATC	2 cut(s)	170, 414
SinI	GGWCC	2 cut(s)	197, 208
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	33, 144
StyD4I	CCNGG	2 cut(s)	12, 204
TaqI	TCGA	2 cut(s)	50, 87
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	376
TauI	GCSGC	2 cut(s)	35, 147
TfiI	GAWTC	2 cut(s)	149, 418
Tru1I	TTAA	2 cut(s)	93, 284
Tru9I	TTAA	2 cut(s)	93, 284
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	218, 248
Tsp45I	GTSAC	1 cut(s)	338
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	197, 208
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.