Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Forward (+)

40039065 .. 40041159

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G478400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAAGAGCAAGCGACGAGCTCCCTTGCCGCGAGCTCTCTTCCGTCGAGCAGCGAAAGGTCTTCGAGCTCTGCATTCCAAGTTGAAGTCAAAGAAGGCATGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAATCTGCCGGAGCGTCAATCTCCGGCAGGGAAACCGGTTCGTTGGCCGGTCCGGACCGGGCCCAAGTGGTAGGTGAGGGGCAAAGAAAGAGAGGAAGAAGTCCAGCTGACAAGGAAAGCAAGAGGCTGAAGAGGTTATTAAGGAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAGAAGGCATACTTGAGTGATTTGGAAGTGAGAGTCAAAGACTTGGAGCAGAAAAACTCTGAGCTTGAGGAGAAGCTTTCCACTTTGCAGAATGAGAATCAGATGCTTAGACATATACTGAAGAACACAACGGCAAGCCGGAGAGGAGCAGGCAGTAATGCAAATGCAGAAGGATCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

168

Amino Acids

18.21

Weight (kDa)

9.51

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	30, 141
AclWI	GGATC	2 cut(s)	489, 502
AcoI	YGGCCR	1 cut(s)	189
AcuI	CTGAAG	2 cut(s)	293, 461
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	6 cut(s)	21, 36, 69, 251, 385, 397
AluI	AGCT	6 cut(s)	21, 36, 69, 251, 385, 397
Alw21I	GWGCWC	3 cut(s)	23, 38, 71
AlwI	GGATC	2 cut(s)	489, 502
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	2 cut(s)	189, 204
ApaI	GGGCCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	51
AsiGI	ACCGGT	1 cut(s)	179
AspS9I	GGNCC	4 cut(s)	194, 199, 204, 205
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	194, 199
BaeGI	GKGCMC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	494
BanII	GRGCYC	4 cut(s)	23, 38, 71, 208
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	3 cut(s)	23, 38, 71
BbvI	GCAGC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	30, 52, 142
BlsI	GCNGC	3 cut(s)	31, 53, 143
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	194, 199
BmgT120I	GGNCC	4 cut(s)	194, 199, 204, 205
BmiI	GGNNCC	2 cut(s)	206, 496
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	355, 407
BpuMI	CCSGG	1 cut(s)	203
BsaWI	WCCGGW	2 cut(s)	179, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse118I	RCCGGY	2 cut(s)	179, 191
BseAI	TCCGGA	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	3 cut(s)	128, 404, 480
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	191, 206
BshTI	ACCGGT	1 cut(s)	179
BsiHKAI	GWGCWC	3 cut(s)	23, 38, 71
BsiSI	CCGG	8 cut(s)	131, 153, 168, 180, 192, 197, 202, 460
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	191, 206
Bsp120I	GGGCCC	1 cut(s)	204
Bsp1286I	GDGCHC	4 cut(s)	23, 38, 71, 208
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	117, 494
BspACI	CCGC	2 cut(s)	30, 141
BspANI	GGCC	2 cut(s)	191, 206
BspCNI	CTCAG	1 cut(s)	373
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	206, 496
BspPI	GGATC	2 cut(s)	489, 502
BsrFI	RCCGGY	2 cut(s)	179, 191
BssAI	RCCGGY	2 cut(s)	179, 191
BssMI	GATC	2 cut(s)	117, 494
Bst6I	CTCTTC	2 cut(s)	45, 269
BstC8I	GCNNGC	5 cut(s)	12, 34, 309, 457, 472
BstDEI	CTNAG	2 cut(s)	381, 428
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	120, 497
BstMBI	GATC	2 cut(s)	117, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	191, 206
Cac8I	GCNNGC	5 cut(s)	12, 34, 309, 457, 472
Cfr10I	RCCGGY	2 cut(s)	179, 191
Cfr13I	GGNCC	4 cut(s)	194, 199, 204, 205
CpoI	CGGWCCG	2 cut(s)	194, 199
CseI	GACGC	1 cut(s)	147
CspAI	ACCGGT	1 cut(s)	179
CspI	CGGWCCG	2 cut(s)	194, 199
CviAII	CATG	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	381, 428
DpnI	GATC	2 cut(s)	119, 496
DpnII	GATC	2 cut(s)	117, 494
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	45, 269
EarI	CTCTTC	2 cut(s)	45, 269
Ecl136II	GAGCTC	3 cut(s)	21, 36, 69
Eco24I	GRGCYC	4 cut(s)	23, 38, 71, 208
Eco47I	GGWCC	2 cut(s)	194, 199
Eco53kI	GAGCTC	3 cut(s)	21, 36, 69
Eco57I	CTGAAG	2 cut(s)	293, 461
EcoICRI	GAGCTC	3 cut(s)	21, 36, 69
EcoT38I	GRGCYC	4 cut(s)	23, 38, 71, 208
FaeI	CATG	1 cut(s)	103
FaiI	YATR	5 cut(s)	101, 331, 435, 437, 502
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	30, 52, 142
FriOI	GRGCYC	4 cut(s)	23, 38, 71, 208
Fsp4HI	GCNGC	3 cut(s)	30, 52, 142
GluI	GCNGC	3 cut(s)	30, 52, 142
HaeIII	GGCC	2 cut(s)	191, 206
HapII	CCGG	8 cut(s)	131, 153, 168, 180, 192, 197, 202, 460
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	3 cut(s)	146, 354, 418
HpaII	CCGG	8 cut(s)	131, 153, 168, 180, 192, 197, 202, 460
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	382, 423
Hpy188III	TCNNGA	2 cut(s)	121, 197
Hpy99I	CGWCG	2 cut(s)	19, 49
HpyAV	CCTTC	3 cut(s)	89, 319, 485
HpyCH4V	TGCA	5 cut(s)	4, 74, 409, 482, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	381, 428
Hsp92II	CATG	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	117, 494
LmnI	GCTCC	4 cut(s)	26, 155, 367, 467
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	414
MalI	GATC	2 cut(s)	119, 496
MboI	GATC	2 cut(s)	117, 494
MboII	GAAGA	6 cut(s)	32, 54, 252, 286, 334, 454
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	4 cut(s)	23, 38, 71, 208
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	8 cut(s)	106, 214, 230, 261, 270, 312, 382, 458
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	8 cut(s)	131, 153, 168, 180, 192, 197, 202, 460
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	74
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	117, 494
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	206, 496
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	146, 418
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	31, 53, 143
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp124BI	GAGCTC	3 cut(s)	23, 38, 71
PspN4I	GGNNCC	2 cut(s)	206, 496
PspOMI	GGGCCC	1 cut(s)	204
PspPI	GGNCC	4 cut(s)	194, 199, 204, 205
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	251
Rsr2I	CGGWCCG	2 cut(s)	194, 199
RsrII	CGGWCCG	2 cut(s)	194, 199
SacI	GAGCTC	3 cut(s)	23, 38, 71
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	3 cut(s)	30, 52, 142
Sau3AI	GATC	2 cut(s)	117, 494
Sau96I	GGNCC	4 cut(s)	194, 199, 204, 205
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	4 cut(s)	23, 38, 71, 208
SetI	ASST	9 cut(s)	23, 38, 62, 71, 220, 253, 281, 387, 399
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	2 cut(s)	194, 199
SmlI	CTYRAG	2 cut(s)	334, 386
SmoI	CTYRAG	2 cut(s)	334, 386
SsiI	CCGC	2 cut(s)	30, 141
SstI	GAGCTC	3 cut(s)	23, 38, 71
StyD4I	CCNGG	1 cut(s)	201
TaqI	TCGA	2 cut(s)	47, 65
TauI	GCSGC	2 cut(s)	32, 144
TfiI	GAWTC	2 cut(s)	146, 418
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseI	GCWGC	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	2 cut(s)	194, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.