Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Forward (+)

42692246 .. 42699223

Gene Structure 6978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0279700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGACTTATCTTCGTGGTTCCGGCGCACCCTTCTACGGAACACTGAAAAGACCCAGAACCCAGATCCCCCAAAGCCAAATGAACCTCAAGAAGAGCTACTTGGAGTCACGGAGCAGTTGATCAATCATGTCAAGTCTTTCACTGTAGAAACCTTCAAGACTTTCCCTCTCCCAGATGATGAAGGAGCTACTTCTGGTGACAACTCTCTGACAACTTCAAGCAACATTCAGAAAGATCTCTCGGAATGGCAGGAAAGGCATGCCATGCTTGTGCTTTCAAAAGTGAAGGAACTTTCCCACCTAAGATATAAGCTATGCCCAGGCCACATGAAGGAACATCAATTTTGGAGAGTATACTTTATGCTTGTCAAGAAACAGGTGGCCGAATACGAGCTACGTGCCATACAACTAGCAAGGCTCAAAGAAGTGACAATGGAAAATGAAAGGTCTACAAGTGCTGATGCATGTGAAGTTGAAATGGCAGAAGCAAACCACAATGCAGTAGCAAGCTTAGCACCTACAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

176

Amino Acids

20.21

Weight (kDa)

5.71

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSD	PF03909	79 - 125	7.5e-11	BSD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	354, 449
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	36, 331
AgsI	TTSAA	4 cut(s)	157, 219, 279, 476
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	5 cut(s)	97, 188, 313, 394, 510
AluI	AGCT	5 cut(s)	97, 188, 313, 394, 510
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	322, 381
AspLEI	GCGC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	120
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	451
Bpu1102I	GCTNAGC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 331
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	36, 331
BshFI	GGCC	2 cut(s)	324, 383
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	36, 331
BsnI	GGCC	2 cut(s)	324, 383
Bsp143I	GATC	3 cut(s)	64, 120, 235
Bsp1720I	GCTNAGC	1 cut(s)	511
BspANI	GGCC	2 cut(s)	324, 383
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	64, 120, 235
BssNAI	GTATAC	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	261, 508
BstDEI	CTNAG	2 cut(s)	302, 511
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	67, 123, 238
BstMBI	GATC	3 cut(s)	64, 120, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 265, 512
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	2 cut(s)	263, 468
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	64, 235
BstYI	RGATCY	2 cut(s)	64, 235
BstZ17I	GTATAC	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	324, 383
BtsIMutI	CAGTG	2 cut(s)	42, 141
Cac8I	GCNNGC	2 cut(s)	261, 508
CfoI	GCGC	1 cut(s)	27
CviAII	CATG	5 cut(s)	128, 260, 265, 328, 465
CviJI	RGCY	9 cut(s)	76, 97, 188, 313, 324, 383, 394, 418, 510
CviKI_1	RGCY	9 cut(s)	76, 97, 188, 313, 324, 383, 394, 418, 510
DdeI	CTNAG	2 cut(s)	302, 511
DpnI	GATC	3 cut(s)	66, 122, 237
DpnII	GATC	3 cut(s)	64, 120, 235
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	466
FaeI	CATG	5 cut(s)	131, 263, 268, 331, 468
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	5 cut(s)	127, 259, 264, 327, 464
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	354, 449
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	324, 383
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	131, 263, 268, 331, 468
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	355, 450
Hpy188I	TCNGA	3 cut(s)	210, 231, 244
Hpy188III	TCNNGA	3 cut(s)	89, 157, 370
Hpy8I	GTNNAC	2 cut(s)	355, 450
HpyAV	CCTTC	5 cut(s)	41, 163, 176, 280, 325
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	464, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 265, 512
HpyF3I	CTNAG	2 cut(s)	302, 511
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	131, 263, 268, 331, 468
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	64, 120, 235
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	112, 185
LpnPI	CCDG	9 cut(s)	35, 68, 75, 180, 186, 236, 306, 333, 362
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	3 cut(s)	106, 197, 427
MalI	GATC	3 cut(s)	66, 122, 237
MboI	GATC	3 cut(s)	64, 120, 235
MboII	GAAGA	2 cut(s)	3, 104
MflI	RGATCY	2 cut(s)	64, 235
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	96, 177
Mph1103I	ATGCAT	1 cut(s)	466
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	256, 265, 512
NdeII	GATC	3 cut(s)	64, 120, 235
NlaIII	CATG	5 cut(s)	131, 263, 268, 331, 468
NlaIV	GGNNCC	1 cut(s)	20
NmuCI	GTSAC	3 cut(s)	106, 197, 427
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	2 cut(s)	263, 468
PaeI	GCATGC	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	87
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	64, 235
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	87
Sau3AI	GATC	3 cut(s)	64, 120, 235
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	341
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	400
TasI	AATT	1 cut(s)	341
TscAI	CASTG	2 cut(s)	49, 148
TseFI	GTSAC	3 cut(s)	106, 197, 427
Tsp45I	GTSAC	3 cut(s)	106, 197, 427
TspDTI	ATGAA	4 cut(s)	96, 195, 344, 456
TspGWI	ACGGA	2 cut(s)	52, 125
TspRI	CASTG	2 cut(s)	49, 148
XceI	RCATGY	2 cut(s)	263, 468
XmiI	GTMKAC	2 cut(s)	354, 449
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.