Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Forward (+)

10357062 .. 10359576

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTGCAAGACCAGGCGACCAGCTCTCTTGCCGCCAGCTCTCTGCCTTCGAGCAGTGAGAGGTCTTCCAGCTCTGCATTCCAGCTCGAAGTTAAAGAAGGCATGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAATCAGCCGGAGCATCGGTCTCTGGCAGGGAAGCCGGTTCGGTGGCCGGTCCAGACCGGGTCCAAGTGGCAGGTGACCAACGAAAGAGGGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGTTGAAGAGGTTGTTAAGGAACAGAGTCTCTGCTCAGCAAGCGAGGGAAAGGAAGAAGGCATACTTGAGTGACTTGGAAGTTAGAGTGAAAGACTTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTCTCTACTTTGCAGAATGAGAATCAGATGCTTAGACATATATTGAAGAACACAACAGCAAGCCGGCGAGGAGGTAGTGGTGCAAATGCTGATGGATCTTTATTTTGTGCCAATTGTGGCATCAGAAATGTGCAGGGTGAAGGAAATAGTAGTGGTGGTTTTGCAAATGTAGAAAAGAGTTTGCGTACTGGTTACTCTGGAATTGTTGTAAAACCTTTATGGAGGAGGTTGAGTGTATCACTAATTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

215

Amino Acids

23.35

Weight (kDa)

9.88

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	86 - 146	4.9e-14	bZIP transcription factor
bZIP_2	PF07716	86 - 139	1.3e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	2 cut(s)	33, 144
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	274, 442
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	6 cut(s)	24, 39, 72, 85, 251, 385
AluI	AGCT	6 cut(s)	24, 39, 72, 85, 251, 385
Alw26I	GTCTC	2 cut(s)	172, 301
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	197, 208
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	233, 545
AvaII	GGWCC	2 cut(s)	197, 208
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	172, 301
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	33, 145
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	34, 146
Bme1390I	CCNGG	2 cut(s)	14, 206
Bme18I	GGWCC	2 cut(s)	197, 208
BmgT120I	GGNCC	2 cut(s)	197, 208
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	14, 206
BmsI	GCATC	3 cut(s)	170, 414, 525
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 613, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	3 cut(s)	182, 194, 459
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	317, 372
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	3 cut(s)	131, 480, 634
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	172, 301
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	120, 491
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	2 cut(s)	33, 144
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	316, 373
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	172
BsrFI	RCCGGY	3 cut(s)	182, 194, 459
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	3 cut(s)	182, 194, 459
BssMI	GATC	2 cut(s)	120, 491
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	37, 309, 457, 461
BstDEI	CTNAG	3 cut(s)	303, 381, 428
BstEII	GGTNACC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	123, 494
BstMAI	GTCTC	2 cut(s)	172, 301
BstMBI	GATC	2 cut(s)	120, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	12, 204
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	37, 309, 457, 461
Cfr10I	RCCGGY	3 cut(s)	182, 194, 459
Cfr13I	GGNCC	2 cut(s)	197, 208
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	3 cut(s)	303, 381, 428
DpnI	GATC	2 cut(s)	122, 493
DpnII	GATC	2 cut(s)	120, 491
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	197, 208
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	104, 331, 435, 437, 616
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	33, 145
Fsp4HI	GCNGC	2 cut(s)	33, 145
GluI	GCNGC	2 cut(s)	33, 145
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	3 cut(s)	149, 294, 418
HpaII	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
HphI	GGTGA	2 cut(s)	233, 545
Hpy188I	TCNGA	3 cut(s)	382, 423, 521
Hpy188III	TCNNGA	3 cut(s)	124, 200, 594
HpyAV	CCTTC	4 cut(s)	57, 92, 319, 530
HpyCH4V	TGCA	6 cut(s)	7, 77, 409, 479, 529, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	303, 381, 428
Hsp92II	CATG	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	459
KroNI	GCCGGC	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	120, 491
LmnI	GCTCC	2 cut(s)	158, 367
LweI	GCATC	3 cut(s)	170, 414, 525
MaeIII	GTNAC	3 cut(s)	221, 338, 587
MalI	GATC	2 cut(s)	122, 493
MboI	GATC	2 cut(s)	120, 491
MboII	GAAGA	6 cut(s)	57, 252, 286, 334, 385, 454
MfeI	CAATTG	1 cut(s)	508
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	4 cut(s)	376, 508, 597, 639
MlyI	GAGTC	1 cut(s)	303
MroNI	GCCGGC	1 cut(s)	459
MseI	TTAA	2 cut(s)	93, 284
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	6 cut(s)	134, 156, 183, 195, 205, 460
MspR9I	CCNGG	2 cut(s)	14, 206
MunI	CAATTG	1 cut(s)	508
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	308
NaeI	GCCGGC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	120, 491
NgoMIV	GCCGGC	1 cut(s)	459
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	221, 338
PaqCI	CACCTGC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	149, 418
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	34, 146
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	197, 208
PsuI	RGATCY	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	93, 284
SatI	GCNGC	2 cut(s)	33, 145
Sau3AI	GATC	2 cut(s)	120, 491
Sau96I	GGNCC	2 cut(s)	197, 208
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	14, 206
SfaNI	GCATC	3 cut(s)	170, 414, 525
SinI	GGWCC	2 cut(s)	197, 208
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	376, 508, 597, 639
SsiI	CCGC	2 cut(s)	33, 144
StyD4I	CCNGG	2 cut(s)	12, 204
TaqI	TCGA	3 cut(s)	50, 87, 643
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	376, 508, 597, 639
TauI	GCSGC	2 cut(s)	35, 147
TfiI	GAWTC	2 cut(s)	149, 418
Tru1I	TTAA	2 cut(s)	93, 284
Tru9I	TTAA	2 cut(s)	93, 284
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	221, 338
Tsp45I	GTSAC	2 cut(s)	221, 338
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	197, 208
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.