Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Forward (+)

10254092 .. 10256106

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTGCAAGACCAGGCGACCAGCTCTCTGGCCGCCAGCTCGCTGCCTTCGAGCAGTGAGAGGTCTTCCAGCTCTGCATTCCAGCTCGAAGTTAAAGAAGGCATGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAATCAGCCGGAGCATCGGTCTCTGGCAGGGAAGCCGGTTCGGTGGCCGGTCCAGACCGGGTCCAAGTGGCAGGTGAGAACCAAAGAAAGAGGGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGTTGAAGAGGTTGTTAAGGAACAGAGTCTCTGCTCAGCAAGCGAGGGAAAGGAAGAAGGCATACTTGAGTGACTTGGAAGTTAGAGTGAAAGACTTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTCTCTACTTTGCAGAATGAGAATCAGATGCTTAGACATATATTGAAGAACACAACAGCAAGCCGGCGAGGAGGTAGTGGTGCAAATGCTGATGGATCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

168

Amino Acids

18.19

Weight (kDa)

9.56

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	87 - 147	3e-14	bZIP transcription factor
bZIP_2	PF07716	87 - 140	6.2e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	2 cut(s)	33, 144
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	2 cut(s)	30, 192
AcsI	RAATTY	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	277, 445
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	6 cut(s)	24, 39, 72, 85, 254, 388
AluI	AGCT	6 cut(s)	24, 39, 72, 85, 254, 388
Alw26I	GTCTC	2 cut(s)	172, 304
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	2 cut(s)	30, 192
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	197, 208
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	197, 208
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	172, 304
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	33, 44, 145
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	34, 45, 146
Bme1390I	CCNGG	2 cut(s)	14, 206
Bme18I	GGWCC	2 cut(s)	197, 208
BmgT120I	GGNCC	2 cut(s)	197, 208
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	14, 206
BmsI	GCATC	2 cut(s)	170, 417
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	3 cut(s)	182, 194, 462
BseBI	CCWGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	320, 375
BseRI	GAGGAG	2 cut(s)	131, 483
BseXI	GCAGC	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	250
BshFI	GGCC	2 cut(s)	32, 194
BsiSI	CCGG	6 cut(s)	134, 156, 183, 195, 205, 463
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	172, 304
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	32, 194
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	120, 494
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	33, 144
BspANI	GGCC	2 cut(s)	32, 194
BspCNI	CTCAG	2 cut(s)	319, 376
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	172
BsrFI	RCCGGY	3 cut(s)	182, 194, 462
BssAI	RCCGGY	3 cut(s)	182, 194, 462
BssMI	GATC	2 cut(s)	120, 494
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	5 cut(s)	37, 41, 312, 460, 464
BstDEI	CTNAG	3 cut(s)	306, 384, 431
BstKTI	GATC	2 cut(s)	123, 497
BstMAI	GTCTC	2 cut(s)	172, 304
BstMBI	GATC	2 cut(s)	120, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 204
BstV1I	GCAGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	32, 194
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	5 cut(s)	37, 41, 312, 460, 464
Cfr10I	RCCGGY	3 cut(s)	182, 194, 462
Cfr13I	GGNCC	2 cut(s)	197, 208
CviAII	CATG	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	306, 384, 431
DpnI	GATC	2 cut(s)	122, 496
DpnII	GATC	2 cut(s)	120, 494
EaeI	YGGCCR	2 cut(s)	30, 192
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	197, 208
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	106
FaiI	YATR	4 cut(s)	104, 334, 438, 440
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	33, 44, 145
Fsp4HI	GCNGC	3 cut(s)	33, 44, 145
GluI	GCNGC	3 cut(s)	33, 44, 145
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	32, 194
HapII	CCGG	6 cut(s)	134, 156, 183, 195, 205, 463
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	3 cut(s)	149, 297, 421
HpaII	CCGG	6 cut(s)	134, 156, 183, 195, 205, 463
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	385, 426
Hpy188III	TCNNGA	2 cut(s)	124, 200
HpyAV	CCTTC	3 cut(s)	57, 92, 322
HpyCH4V	TGCA	4 cut(s)	7, 77, 412, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	306, 384, 431
Hsp92II	CATG	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	462
KroNI	GCCGGC	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	120, 494
LmnI	GCTCC	2 cut(s)	158, 370
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	170, 417
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	122, 496
MboI	GATC	2 cut(s)	120, 494
MboII	GAAGA	6 cut(s)	57, 255, 289, 337, 388, 457
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	306
MnlI	CCTC	9 cut(s)	54, 109, 231, 264, 273, 309, 390, 461, 464
MroNI	GCCGGC	1 cut(s)	462
MseI	TTAA	2 cut(s)	93, 287
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	6 cut(s)	134, 156, 183, 195, 205, 463
MspR9I	CCNGG	2 cut(s)	14, 206
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	311
NaeI	GCCGGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	120, 494
NgoMIV	GCCGGC	1 cut(s)	462
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	149, 421
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	34, 45, 146
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	197, 208
PsuI	RGATCY	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	93, 287
SatI	GCNGC	3 cut(s)	33, 44, 145
Sau3AI	GATC	2 cut(s)	120, 494
Sau96I	GGNCC	2 cut(s)	197, 208
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	14, 206
SfaNI	GCATC	2 cut(s)	170, 417
SinI	GGWCC	2 cut(s)	197, 208
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	2 cut(s)	33, 144
StyD4I	CCNGG	2 cut(s)	12, 204
TaqI	TCGA	2 cut(s)	50, 87
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	379
TauI	GCSGC	2 cut(s)	35, 147
TfiI	GAWTC	2 cut(s)	149, 421
Tru1I	TTAA	2 cut(s)	93, 287
Tru9I	TTAA	2 cut(s)	93, 287
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	341
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	197, 208
XapI	RAATTY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.