Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015412

Physical Location & Seq

Genomic Coordinates Forward (+)

7475416 .. 7477667

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCAAGAGCAGGCGACGAGCTCCCTCGCTGCGAGCTCTCTGCCTTCCAGCAGCGAAAGGTCTTCCAGCTCCGCATTTCATCTTGAAGTTAAAGAAGGCATGGAAAGTGATGAGGAGATCAGAAGAGTGCCGGAGATCGGCGGCGAATCGGCGGGAGCGTCGGCTTCCGGCCTGGAAAACGGCTCGTTGGCCGGTCCAGACCGGGTCCAAGCGGCTGGTGAGAGTCAAAGAAAGAGAGGAAGAAATCCAGCAGACAAGGAAAGCAAGCGGCTGAAGAGGTTGTTGAGGAACAGAGTTTCAGCACAGCTAGCAAGGGAGAGGAAGAAGGCATATTTGAATGATTTGGAAGTGAGACTCAAAGAATTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTTTCCACTTTGCAGAATGAGAATCAGATGCTTAGACAAATATTGAAGAACACAACAGCAAGCCGGAGAGGAGCGGGTGGTAGTGCAAATGCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

165

Amino Acids

17.91

Weight (kDa)

9.34

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11260
fragaria_vesca	FvH4_2g29440
malus_domestica	MD08G1147100.v1.1
prunus_persica	Prupe.1G478400_v2.0.a1
pyrus_communis	pycom08g12390 pycom15g11080
rosa_chinensis	RchiOBHm_Chr6g0298231
rosa_laevigata	RLG00000011523
rosa_multiflora	Rmu_sc0017507.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169840
rosa_rugosa	Rorug06G0279600 Rorug06G0279600 Rorug06G0279700
rosa_samantha	Rh6BG398400 Rh6CG404300
rosa_wichuraiana	Rw6G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	7 cut(s)	72, 141, 152, 212, 268, 470, 488
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	86, 337, 442
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	21, 36, 69, 307, 385
AluI	AGCT	5 cut(s)	21, 36, 69, 307, 385
Alw21I	GWGCWC	2 cut(s)	23, 38
Alw26I	GTCTC	1 cut(s)	346
AoxI	GGCC	2 cut(s)	169, 189
ApeKI	GCWGC	2 cut(s)	29, 51
ApoI	RAATTY	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	194, 205
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	194, 205
BanII	GRGCYC	2 cut(s)	23, 38
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	23, 38
BbvI	GCAGC	2 cut(s)	16, 63
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	5 cut(s)	30, 52, 142, 213, 269
BlsI	GCNGC	5 cut(s)	31, 53, 143, 214, 270
Bme1390I	CCNGG	2 cut(s)	173, 203
Bme18I	GGWCC	2 cut(s)	194, 205
BmgT120I	GGNCC	2 cut(s)	194, 205
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	173, 203
BmsI	GCATC	1 cut(s)	414
BmtI	GCTAGC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	128, 480
BseXI	GCAGC	2 cut(s)	16, 63
BshFI	GGCC	2 cut(s)	171, 191
BsiHKAI	GWGCWC	2 cut(s)	23, 38
BsiSI	CCGG	5 cut(s)	131, 168, 192, 202, 460
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	171, 191
Bsp1286I	GDGCHC	2 cut(s)	23, 38
Bsp143I	GATC	2 cut(s)	117, 135
BspACI	CCGC	7 cut(s)	72, 141, 152, 212, 268, 470, 488
BspANI	GGCC	2 cut(s)	171, 191
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssMI	GATC	2 cut(s)	117, 135
Bst2UI	CCWGG	1 cut(s)	173
Bst6I	CTCTTC	2 cut(s)	118, 269
BstC8I	GCNNGC	5 cut(s)	12, 34, 266, 309, 457
BstDEI	CTNAG	2 cut(s)	381, 428
BstKTI	GATC	2 cut(s)	120, 138
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	2 cut(s)	117, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	171, 201
BstV1I	GCAGC	2 cut(s)	16, 63
BstV2I	GAAGAC	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	171, 191
Cac8I	GCNNGC	5 cut(s)	12, 34, 266, 309, 457
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	194, 205
CseI	GACGC	1 cut(s)	147
CviAII	CATG	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	381, 428
DpnI	GATC	2 cut(s)	119, 137
DpnII	GATC	2 cut(s)	117, 135
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	118, 269
EarI	CTCTTC	2 cut(s)	118, 269
Ecl136II	GAGCTC	2 cut(s)	21, 36
Eco24I	GRGCYC	2 cut(s)	23, 38
Eco47I	GGWCC	2 cut(s)	194, 205
Eco53kI	GAGCTC	2 cut(s)	21, 36
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	2 cut(s)	21, 36
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	23, 38
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 331
FatI	CATG	1 cut(s)	99
FauI	CCCGC	2 cut(s)	145, 463
Fnu4HI	GCNGC	5 cut(s)	30, 52, 142, 213, 269
FriOI	GRGCYC	2 cut(s)	23, 38
Fsp4HI	GCNGC	5 cut(s)	30, 52, 142, 213, 269
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	5 cut(s)	30, 52, 142, 213, 269
HaeIII	GGCC	2 cut(s)	171, 191
HapII	CCGG	5 cut(s)	131, 168, 192, 202, 460
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	4 cut(s)	146, 223, 354, 418
HpaII	CCGG	5 cut(s)	131, 168, 192, 202, 460
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	122, 382, 423
Hpy188III	TCNNGA	2 cut(s)	83, 197
Hpy99I	CGWCG	2 cut(s)	19, 163
HpyAV	CCTTC	3 cut(s)	54, 89, 319
HpyCH4V	TGCA	3 cut(s)	4, 409, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	381, 428
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	117, 135
LmnI	GCTCC	5 cut(s)	26, 74, 155, 367, 467
Lsp1109I	GCAGC	2 cut(s)	16, 63
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	308
MalI	GATC	2 cut(s)	119, 137
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	2 cut(s)	117, 135
MboII	GAAGA	7 cut(s)	54, 135, 252, 286, 334, 385, 454
MhlI	GDGCHC	2 cut(s)	23, 38
MluCI	AATT	2 cut(s)	362, 376
MlyI	GAGTC	2 cut(s)	232, 348
MnlI	CCTC	8 cut(s)	35, 106, 230, 270, 279, 312, 387, 458
MseI	TTAA	1 cut(s)	90
MspI	CCGG	5 cut(s)	131, 168, 192, 202, 460
MspR9I	CCNGG	2 cut(s)	173, 203
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	117, 135
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	146, 418
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	31, 53, 143, 214, 270
PleI	GAGTC	2 cut(s)	231, 348
PpsI	GAGTC	2 cut(s)	231, 348
Psp124BI	GAGCTC	2 cut(s)	23, 38
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	194, 205
PsyI	GACNNNGTC	1 cut(s)	203
SacI	GAGCTC	2 cut(s)	23, 38
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	5 cut(s)	30, 52, 142, 213, 269
Sau3AI	GATC	2 cut(s)	117, 135
Sau96I	GGNCC	2 cut(s)	194, 205
SchI	GAGTC	2 cut(s)	232, 348
ScrFI	CCNGG	2 cut(s)	173, 203
SduI	GDGCHC	2 cut(s)	23, 38
SetI	ASST	7 cut(s)	23, 38, 62, 71, 281, 309, 387
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	2 cut(s)	194, 205
Sse9I	AATT	2 cut(s)	362, 376
SsiI	CCGC	7 cut(s)	72, 141, 152, 212, 268, 470, 488
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	2 cut(s)	23, 38
StyD4I	CCNGG	2 cut(s)	171, 201
TasI	AATT	2 cut(s)	362, 376
TauI	GCSGC	3 cut(s)	144, 215, 271
TfiI	GAWTC	2 cut(s)	146, 418
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	2 cut(s)	29, 51
TspDTI	ATGAA	1 cut(s)	68
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	194, 205
XapI	RAATTY	1 cut(s)	376
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.