Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Reverse (-)

42685735 .. 42689072

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGACCGCGGCGGGGACAAGCAGCACCACCAGCAGCTCTCTTTGCCTAAGAGTGCAAGGCAGCAGCACAGATATAACGAATGGATTTTCCGGGATGTTCCAAGTGATATTACAATAGAAGTGAATGGAGGTGCTTTCTCACTGCATAAGTTCCCTCTTGTCTCTCGAAGTGGGCGCATCCGGAAGCTAGTAGCTGAACATAGAGATTCTGATATCTCAAGGGTGGAGCTTCTTAATCTACCAGGAGGCGCTGAAACATTTGAGTTGGCAGCGAAATTCTGTTATGGTATTAACTTTGAAATCACATCAGCAAATGTTGCGCAGCTGTGTTGTATATCCGATTTCCTTGAAATGACTGAAGAGTTCTCAAAAGACAATCTTGGCTCGCGTGCTGAAGAGTATCTCGAAAGCATTGTTTGCAAGAGTCTTGAAATGTGCGTTGAAGTTTTGCAACAATGTGAGACTTTACTTCCTCTAGCTGATGAGCTCAGAGTAATTAGCCGCTGCATAGATGCAATCGCCTCAAAGGCCTGCGTGGAGCAAATTGCTTCAAGCTTCTCCCGCTTGGAGTATAGCAGCTCAGGAAGGCTACACATGAACAGGCAAGCCAAATGTGATGGGGACTGGTGGATAGAAGATCTTTCTGGCCTCCGGGTTGACTTGTACCAAAGAGTCATAACAGCCATGAAGTGTCGTGGAGTCCGCCCCGAGAGTATCGGTGCATCTCTGATGAACTATGCTCAGAAGGAGTTGACAAAGAAGTCCAGCTTATGGAACCCACCTGGCCAGACAAAAGTTGATGTAAATTCAACTGGGCACGAAAAACTAGTGGTTGAAACGATTGTCAGCCTTCTTCCTGTTGAGAAACTTGCTGTTCCAATCAACTTCCTTTTCGGGCTTTTGCGAAGTGCAGTGATTCTTGATTGCACAGTTGCTTGCAGACTTGATCTGGAGAGGAGGATTGGGTCTCAGCTGGATATTGCTTCTCTTGATGATCTTCTGATACCATCTTTCAAGCACTCTGGTGATACTTTGTTTGATGTGGATACGGTGCATAGGATTTTAATTAACTTTTCTCAGCAAGAGGACAGTGAAGAAGAAGAAATGGAAGATGGTTCTGTTTTTGAATCTGATAGTCCTCATTCGCCTTCCCAAACCGCGCTTTTTAAGGTTTCAAAGTTAGTGGACAACTACCTTGCTGAGATTGCTCCTGATGCAAACCTCAAGCTCACTAAATTTCTAGTCATTGCTGATGCTTTGCCTGAACATGCACGAACTGTTCATGATGGGTTATATCGAGCCATAGACATCTATTTAAAAGCCCATCAAGGTTTATCAGATACTGACAAGAAGAAGCTCTGCAAACTAATCGATTTCCAAAAGCTCTCTCAAGAAGCCGGTGCACACGCTGCACAGAATGAGCGCCTCCCTCTCCAGTCGATAGTACAAGTTCTTTACTTTGAGCAATTAAGGCTCAGAAATTCCTTGGGCTGCTCTAATGGTGAAGACGAACACAAGCCAATGCACCAGTCATGGCGGATCAGCAGTGGTGCACTCAGTGCAGCAATGTCTCCTCGAGACAACTATGCATCATTGAGGCGAGAAAACCGTGAGCTAAAACTTGAGCTAGCTCGGCTACGAATGAGACTAAATGATCTTGAGAGAGAACATGTCTGTATGAAGAGGGATATGGAAAAGTCCAACTCTCGTAAATTTATGAGTTCTTTCTCCAAGAAAATTGGCAAGCTAAGCTTCTTTGGACATAGTTCTTCAAGGGCATCCACTTCTCCATCAAGACAATCATATAGAACGGATTCTAAGGTGATCGAAAGAACATGTGCAAGCATAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

617

Amino Acids

69.63

Weight (kDa)

6.26

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	208 - 466	6.2e-95	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	760
Acc16I	TGCGCA	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccII	CGCG	3 cut(s)	9, 388, 1160
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	8 cut(s)	7, 9, 12, 502, 562, 703, 1158, 1537
AclWI	GGATC	1 cut(s)	1547
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	5 cut(s)	275, 805, 1235, 1480, 1712
AcuI	CTGAAG	2 cut(s)	378, 414
AdeI	CACNNNGTG	1 cut(s)	1559
AfaI	GTAC	2 cut(s)	665, 1446
AfiI	CCNNNNNNNGG	2 cut(s)	13, 771
AflIII	ACRYGT	2 cut(s)	1669, 1835
AhlI	ACTAGT	1 cut(s)	826
AjnI	CCWGG	2 cut(s)	241, 781
AleI	CACNNNNGTG	1 cut(s)	1023
Alw21I	GWGCWC	3 cut(s)	489, 1405, 1555
Alw26I	GTCTC	6 cut(s)	166, 455, 972, 1572, 1575, 1639
Alw44I	GTGCAC	2 cut(s)	1401, 1551
AlwI	GGATC	1 cut(s)	1547
AlwNI	CAGNNNCTG	1 cut(s)	1343
Ama87I	CYCGRG	2 cut(s)	707, 1575
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	3 cut(s)	528, 646, 784
ApaLI	GTGCAC	2 cut(s)	1401, 1551
ApoI	RAATTY	5 cut(s)	275, 805, 1235, 1480, 1712
Asp700I	GAANNNNTTC	1 cut(s)	1813
AspLEI	GCGC	5 cut(s)	177, 251, 322, 1162, 1425
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	92, 653
AsuHPI	GGTGA	3 cut(s)	1037, 1514, 1834
AsuNHI	GCTAGC	1 cut(s)	1627
AvaI	CYCGRG	2 cut(s)	707, 1575
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	3 cut(s)	819, 1405, 1555
BalI	TGGCCA	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	1512
Bbv12I	GWGCWC	3 cut(s)	489, 1405, 1555
BccI	CCATC	6 cut(s)	611, 1015, 1106, 1280, 1332, 1798
BcgI	CGANNNNNNTGC	2 cut(s)	1351, 1385
BciT130I	CCWGG	2 cut(s)	243, 783
BciVI	GTATCC	1 cut(s)	1039
BcnI	CCSGG	2 cut(s)	92, 653
BcoDI	GTCTC	6 cut(s)	166, 455, 972, 1572, 1575, 1639
BcuI	ACTAGT	1 cut(s)	826
BfaI	CTAG	5 cut(s)	188, 476, 827, 1241, 1628
BfoI	RGCGCY	2 cut(s)	252, 1426
BfuI	GTATCC	1 cut(s)	1039
BglI	GCCNNNNNGGC	1 cut(s)	527
BglII	AGATCT	1 cut(s)	637
BlpI	GCTNAGC	1 cut(s)	1748
Bme1390I	CCNGG	4 cut(s)	92, 243, 653, 783
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	707, 1575
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	4 cut(s)	92, 243, 653, 783
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	7 cut(s)	186, 502, 731, 1204, 1243, 1598, 1787
BmtI	GCTAGC	1 cut(s)	1631
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	1512
BpmI	CTGGAG	2 cut(s)	971, 1418
Bpu10I	CCTNAGC	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	1748
BpuEI	CTTGAG	5 cut(s)	202, 1208, 1374, 1643, 1679
BpuMI	CCSGG	2 cut(s)	92, 653
Bsa29I	ATCGAT	1 cut(s)	1371
BsaI	GGTCTC	1 cut(s)	972
BsaJI	CCNNGG	2 cut(s)	7, 1485
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 771
Bse118I	RCCGGY	1 cut(s)	1397
Bse1I	ACTGG	4 cut(s)	629, 817, 1435, 1528
Bse3DI	GCAATG	2 cut(s)	1245, 1572
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	243, 783
BseCI	ATCGAT	1 cut(s)	1371
BseDI	CCNNGG	2 cut(s)	7, 1485
BseGI	GGATG	3 cut(s)	100, 177, 1778
BseLI	CCNNNNNNNGG	2 cut(s)	13, 771
BseMI	GCAATG	2 cut(s)	1245, 1572
BseMII	CTCAG	8 cut(s)	502, 594, 755, 983, 1091, 1191, 1489, 1570
BseNI	ACTGG	4 cut(s)	629, 817, 1435, 1528
BseRI	GAGGAG	2 cut(s)	970, 1563
BseSI	GKGCMC	3 cut(s)	819, 1405, 1555
BsgI	GTGCAG	3 cut(s)	930, 1395, 1581
Bsh1236I	CGCG	3 cut(s)	9, 388, 1160
BshFI	GGCC	3 cut(s)	530, 648, 786
BshVI	ATCGAT	1 cut(s)	1371
BsiHKAI	GWGCWC	3 cut(s)	489, 1405, 1555
BsiHKCI	CYCGRG	2 cut(s)	707, 1575
BsiSI	CCGG	4 cut(s)	91, 181, 652, 1398
BslFI	GGGAC	2 cut(s)	29, 635
BslI	CCNNNNNNNGG	2 cut(s)	13, 771
BsmAI	GTCTC	6 cut(s)	166, 455, 972, 1572, 1575, 1639
BsmFI	GGGAC	2 cut(s)	29, 635
BsnI	GGCC	3 cut(s)	530, 648, 786
Bso31I	GGTCTC	1 cut(s)	972
BsoBI	CYCGRG	2 cut(s)	707, 1575
Bsp1286I	GDGCHC	4 cut(s)	489, 819, 1405, 1555
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
Bsp1720I	GCTNAGC	1 cut(s)	1748
BspACI	CCGC	8 cut(s)	7, 9, 12, 502, 562, 703, 1158, 1537
BspANI	GGCC	3 cut(s)	530, 648, 786
BspCNI	CTCAG	8 cut(s)	501, 593, 754, 982, 1090, 1192, 1488, 1569
BspDI	ATCGAT	1 cut(s)	1371
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	9, 388, 1160
BspHI	TCATGA	1 cut(s)	1282
BspLI	GGNNCC	1 cut(s)	776
BspOI	GCTAGC	1 cut(s)	1631
BspPI	GGATC	1 cut(s)	1547
BspTNI	GGTCTC	1 cut(s)	972
BsrDI	GCAATG	2 cut(s)	1245, 1572
BsrFI	RCCGGY	1 cut(s)	1397
BsrI	ACTGG	4 cut(s)	629, 817, 1435, 1528
BssAI	RCCGGY	1 cut(s)	1397
BssECI	CCNNGG	2 cut(s)	7, 1485
BssMI	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
BssT1I	CCWWGG	1 cut(s)	1485
Bst2UI	CCWGG	2 cut(s)	243, 783
Bst4CI	ACNGT	5 cut(s)	931, 1051, 1091, 1279, 1610
Bst6I	CTCTTC	3 cut(s)	354, 390, 1676
BstAPI	GCANNNNNTGC	4 cut(s)	317, 417, 1409, 1559
BstC8I	GCNNGC	8 cut(s)	386, 390, 532, 606, 937, 1629, 1745, 1843
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	3 cut(s)	100, 177, 1778
BstFNI	CGCG	3 cut(s)	9, 388, 1160
BstH2I	RGCGCY	2 cut(s)	252, 1426
BstHHI	GCGC	5 cut(s)	177, 251, 322, 1162, 1425
BstKTI	GATC	6 cut(s)	640, 949, 997, 1542, 1657, 1827
BstMAI	GTCTC	6 cut(s)	166, 455, 972, 1572, 1575, 1639
BstMBI	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
BstNI	CCWGG	2 cut(s)	243, 783
BstNSI	RCATGY	3 cut(s)	1271, 1673, 1839
BstSCI	CCNGG	4 cut(s)	90, 241, 651, 781
BstSLI	GKGCMC	3 cut(s)	819, 1405, 1555
BstUI	CGCG	3 cut(s)	9, 388, 1160
BstV2I	GAAGAC	1 cut(s)	1512
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	1371
BsuI	GTATCC	1 cut(s)	1039
BsuRI	GGCC	3 cut(s)	530, 648, 786
BsuTUI	ATCGAT	1 cut(s)	1371
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	100, 177, 1778
BtsI	GCAGTG	3 cut(s)	140, 918, 1552
BtsIMutI	CAGTG	5 cut(s)	140, 918, 1096, 1552, 1564
Cac8I	GCNNGC	8 cut(s)	386, 390, 532, 606, 937, 1629, 1745, 1843
CaiI	CAGNNNCTG	1 cut(s)	1343
CciI	TCATGA	1 cut(s)	1282
CfoI	GCGC	5 cut(s)	177, 251, 322, 1162, 1425
Cfr10I	RCCGGY	1 cut(s)	1397
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	1371
Csp6I	GTAC	2 cut(s)	664, 1445
CspCI	CAANNNNNGTGG	2 cut(s)	1164, 1199
CviAII	CATG	7 cut(s)	595, 685, 1268, 1283, 1533, 1670, 1836
CviQI	GTAC	2 cut(s)	664, 1445
DpnI	GATC	6 cut(s)	639, 948, 996, 1541, 1656, 1826
DpnII	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
DraI	TTTAAA	1 cut(s)	1317
DraIII	CACNNNGTG	1 cut(s)	1559
DrdI	GACNNNNNNGTC	1 cut(s)	760
DseDI	GACNNNNNNGTC	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	3 cut(s)	354, 390, 1676
EarI	CTCTTC	3 cut(s)	354, 390, 1676
EciI	GGCGGA	2 cut(s)	692, 1552
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	1485
Eco147I	AGGCCT	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	2 cut(s)	378, 414
Eco88I	CYCGRG	2 cut(s)	707, 1575
EcoICRI	GAGCTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	241, 781
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	1485
EcoT22I	ATGCAT	1 cut(s)	1591
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	1485
FaeI	CATG	7 cut(s)	598, 688, 1271, 1286, 1536, 1673, 1839
FalI	AAGNNNNNCTT	6 cut(s)	363, 395, 752, 784, 1736, 1768
FaqI	GGGAC	2 cut(s)	29, 635
FatI	CATG	7 cut(s)	594, 684, 1267, 1282, 1532, 1669, 1835
FauI	CCCGC	2 cut(s)	5, 569
FokI	GGATG	3 cut(s)	107, 164, 1765
FriOI	GRGCYC	1 cut(s)	489
FspBI	CTAG	5 cut(s)	188, 476, 827, 1241, 1628
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	5 cut(s)	176, 250, 321, 1161, 1424
GsuI	CTGGAG	2 cut(s)	971, 1418
HaeII	RGCGCY	2 cut(s)	252, 1426
HaeIII	GGCC	3 cut(s)	530, 648, 786
HapII	CCGG	4 cut(s)	91, 181, 652, 1398
HhaI	GCGC	5 cut(s)	177, 251, 322, 1162, 1425
Hin1II	CATG	7 cut(s)	598, 688, 1271, 1286, 1536, 1673, 1839
Hin6I	GCGC	5 cut(s)	175, 249, 320, 1160, 1423
HinP1I	GCGC	5 cut(s)	175, 249, 320, 1160, 1423
HincII	GTYRAC	2 cut(s)	658, 753
HindII	GTYRAC	2 cut(s)	658, 753
HindIII	AAGCTT	2 cut(s)	553, 1750
HinfI	GANTC	7 cut(s)	206, 424, 672, 699, 916, 1127, 1814
HpaII	CCGG	4 cut(s)	91, 181, 652, 1398
HphI	GGTGA	3 cut(s)	1037, 1514, 1834
Hpy166II	GTNNAC	5 cut(s)	658, 753, 1186, 1403, 1553
Hpy188I	TCNGA	9 cut(s)	211, 340, 491, 729, 744, 1002, 1132, 1339, 1478
Hpy8I	GTNNAC	5 cut(s)	658, 753, 1186, 1403, 1553
HpyAV	CCTTC	4 cut(s)	579, 739, 860, 1158
HpyCH4III	ACNGT	5 cut(s)	931, 1051, 1091, 1279, 1610
Hsp92II	CATG	7 cut(s)	598, 688, 1271, 1286, 1536, 1673, 1839
HspAI	GCGC	5 cut(s)	175, 249, 320, 1160, 1423
Kpn2I	TCCGGA	1 cut(s)	180
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
LmnI	GCTCC	3 cut(s)	226, 538, 1213
LweI	GCATC	7 cut(s)	186, 502, 731, 1204, 1243, 1598, 1787
MaeI	CTAG	5 cut(s)	188, 476, 827, 1241, 1628
MalI	GATC	6 cut(s)	639, 948, 996, 1541, 1656, 1826
MboI	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	4 cut(s)	489, 819, 1405, 1555
MlsI	TGGCCA	1 cut(s)	786
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	3 cut(s)	433, 681, 708
MmeI	TCCRAC	1 cut(s)	1725
Mox20I	TGGCCA	1 cut(s)	786
Mph1103I	ATGCAT	1 cut(s)	1591
MroI	TCCGGA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	1813
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	7 cut(s)	234, 291, 1064, 1068, 1167, 1316, 1469
MslI	CAYNNNNRTG	1 cut(s)	1023
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	4 cut(s)	9, 325, 504, 973
MspI	CCGG	4 cut(s)	91, 181, 652, 1398
MspR9I	CCNGG	4 cut(s)	92, 243, 653, 783
MvaI	CCWGG	2 cut(s)	243, 783
MvnI	CGCG	3 cut(s)	9, 388, 1160
NciI	CCSGG	2 cut(s)	92, 653
NdeII	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
NheI	GCTAGC	1 cut(s)	1627
NlaIII	CATG	7 cut(s)	598, 688, 1271, 1286, 1536, 1673, 1839
NlaIV	GGNNCC	1 cut(s)	776
NmeAIII	GCCGAG	1 cut(s)	1612
NsbI	TGCGCA	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	1591
NspI	RCATGY	3 cut(s)	1271, 1673, 1839
OliI	CACNNNNGTG	1 cut(s)	1023
PacI	TTAATTAA	1 cut(s)	1068
PaeR7I	CTCGAG	1 cut(s)	1575
PagI	TCATGA	1 cut(s)	1282
PceI	AGGCCT	1 cut(s)	530
PciI	ACATGT	2 cut(s)	1669, 1835
PdmI	GAANNNNTTC	1 cut(s)	1813
PfeI	GAWTC	4 cut(s)	206, 916, 1127, 1814
PflMI	CCANNNNNTGG	1 cut(s)	771
PfoI	TCCNGGA	1 cut(s)	90
PleI	GAGTC	3 cut(s)	432, 680, 707
PpsI	GAGTC	3 cut(s)	432, 680, 707
PscI	ACATGT	2 cut(s)	1669, 1835
Psp124BI	GAGCTC	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	241, 781
PspGI	CCWGG	2 cut(s)	241, 781
PspN4I	GGNNCC	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	1343
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	2 cut(s)	325, 973
RsaI	GTAC	2 cut(s)	665, 1446
RsaNI	GTAC	2 cut(s)	664, 1445
RseI	CAYNNNNRTG	1 cut(s)	1023
SacI	GAGCTC	1 cut(s)	489
SacII	CCGCGG	1 cut(s)	10
SaqAI	TTAA	7 cut(s)	234, 291, 1064, 1068, 1167, 1316, 1469
Sau3AI	GATC	6 cut(s)	637, 946, 994, 1539, 1654, 1824
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	433, 681, 708
ScrFI	CCNGG	4 cut(s)	92, 243, 653, 783
SduI	GDGCHC	4 cut(s)	489, 819, 1405, 1555
SfaNI	GCATC	7 cut(s)	186, 502, 731, 1204, 1243, 1598, 1787
Sfr274I	CTCGAG	1 cut(s)	1575
Sfr303I	CCGCGG	1 cut(s)	10
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	1575
SmiMI	CAYNNNNRTG	1 cut(s)	1023
SmlI	CTYRAG	6 cut(s)	217, 1223, 1389, 1575, 1622, 1658
SmoI	CTYRAG	6 cut(s)	217, 1223, 1389, 1575, 1622, 1658
SpeI	ACTAGT	1 cut(s)	826
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	8 cut(s)	7, 9, 12, 502, 562, 703, 1158, 1537
SspMI	CTAG	5 cut(s)	188, 476, 827, 1241, 1628
SstI	GAGCTC	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	4 cut(s)	90, 241, 651, 781
StyI	CCWWGG	1 cut(s)	1485
TaaI	ACNGT	5 cut(s)	931, 1051, 1091, 1279, 1610
TaqI	TCGA	7 cut(s)	166, 405, 1297, 1371, 1439, 1576, 1827
TatI	WGTACW	1 cut(s)	1444
TauI	GCSGC	2 cut(s)	12, 504
TfiI	GAWTC	4 cut(s)	206, 916, 1127, 1814
Tru1I	TTAA	7 cut(s)	234, 291, 1064, 1068, 1167, 1316, 1469
Tru9I	TTAA	7 cut(s)	234, 291, 1064, 1068, 1167, 1316, 1469
TscAI	CASTG	5 cut(s)	147, 918, 1096, 1552, 1564
TspDTI	ATGAA	5 cut(s)	611, 701, 746, 1271, 1694
TspGWI	ACGGA	1 cut(s)	1826
TspRI	CASTG	5 cut(s)	147, 918, 1096, 1552, 1564
Van91I	CCANNNNNTGG	1 cut(s)	771
VneI	GTGCAC	2 cut(s)	1401, 1551
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	5 cut(s)	275, 805, 1235, 1480, 1712
XceI	RCATGY	3 cut(s)	1271, 1673, 1839
XhoI	CTCGAG	1 cut(s)	1575
XmnI	GAANNNNTTC	1 cut(s)	1813
XspI	CTAG	5 cut(s)	188, 476, 827, 1241, 1628
Zsp2I	ATGCAT	1 cut(s)	1591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.