pycom08g12430

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0002909
Physical Location & Seq
Forward (+)
10861562 .. 10863160
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g12430.1

Sequence Viewer

Length: 405 bp
ATGGAGGGTCTCGCAGAAGGAGTGAACAACTTGCGAATTACAGACGCATCATACAACAACAAGAAGAAGAATCGCATCCAAGTCTCCAACACCAAAAAGCCGCTCTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCACAACAACGAGGTGGAGCTCTCCGCTCTTGGAATGGCTATTGCCACAGTTGTTACCATTGCTGAGATTCTGAAGAACAATGGATTGGCTTTGGAGAAGAGAATCATGACTTCTACAATTGACATGAGGGAAGATGCAGGAGGGCGGCCCATTCAAAAGGCAAAGATCGAAATACTTCTTGAAAAGTCAGAGAAGTTCGACGAGATAATGGCTGCTGATGCTGATGCAGCTGCTGCGGCTGAGGAAGGGATTGAGTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

135

Amino Acids

14.89

Weight (kDa)

5.34

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 24 - 76 1.5e-12 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 103, 167
AciI CCGC 4 cut(s) 101, 165, 286, 377
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 296, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 160, 371
AluI AGCT 2 cut(s) 160, 371
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 14, 88
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 5 cut(s) 139, 353, 368, 371, 374
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 5 cut(s) 151, 340, 358, 361, 380
BcoDI GTCTC 2 cut(s) 14, 88
BisI GCNGC 8 cut(s) 101, 140, 287, 354, 369, 372, 375, 378
BlsI GCNGC 8 cut(s) 102, 141, 288, 355, 370, 373, 376, 379
BmgT120I GGNCC 1 cut(s) 288
BmsI GCATC 5 cut(s) 56, 84, 265, 349, 355
Bpu10I CCTNAGC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 198
BseGI GGATG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 195, 372
BseXI GCAGC 5 cut(s) 151, 340, 358, 361, 380
BshFI GGCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 14, 88
BsnI GGCC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 4 cut(s) 101, 165, 286, 377
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 196, 373
BspHI TCATGA 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 2 cut(s) 103, 167
BsrDI GCAATG 1 cut(s) 198
BssMI GATC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 110, 233
BstAPI GCANNNNNTGC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 204, 381
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 14, 88
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 4 cut(s) 359, 368, 374, 377
BstNSI RCATGY 1 cut(s) 139
BstV1I GCAGC 5 cut(s) 151, 340, 358, 361, 380
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 136, 247, 265
CviJI RGCY 8 cut(s) 100, 160, 179, 230, 289, 353, 371, 380
CviKI_1 RGCY 8 cut(s) 100, 160, 179, 230, 289, 353, 371, 380
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 204, 381
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 110, 233
EarI CTCTTC 2 cut(s) 110, 233
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 3 cut(s) 139, 250, 268
FaiI YATR 5 cut(s) 52, 137, 248, 266, 399
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 3 cut(s) 135, 246, 264
Fnu4HI GCNGC 8 cut(s) 101, 140, 287, 354, 369, 372, 375, 378
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 8 cut(s) 101, 140, 287, 354, 369, 372, 375, 378
GluI GCNGC 8 cut(s) 101, 140, 287, 354, 369, 372, 375, 378
HaeIII GGCC 1 cut(s) 289
HgaI GACGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 139, 250, 268
HinfI GANTC 3 cut(s) 70, 208, 243
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 213, 331
Hpy188III TCNNGA 2 cut(s) 247, 320
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 11, 380
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 139, 278, 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 368, 374, 377
HpyF3I CTNAG 2 cut(s) 204, 381
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 3 cut(s) 139, 250, 268
Kzo9I GATC 1 cut(s) 306
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 264
Lsp1109I GCAGC 5 cut(s) 151, 340, 358, 361, 380
LweI GCATC 5 cut(s) 56, 84, 265, 349, 355
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 308
MbiI CCGCTC 2 cut(s) 103, 167
MboI GATC 1 cut(s) 306
MboII GAAGA 7 cut(s) 76, 79, 97, 100, 226, 250, 284
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 2 cut(s) 36, 258
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 123, 145, 261, 275, 376
MroXI GAANNNNTTC 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 371
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 359, 368, 374, 377
NdeII GATC 1 cut(s) 306
NlaIII CATG 3 cut(s) 139, 250, 268
NspI RCATGY 1 cut(s) 139
PagI TCATGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 70, 208, 243
PkrI GCNGC 8 cut(s) 102, 141, 288, 355, 370, 373, 376, 379
Psp124BI GAGCTC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 110
SatI GCNGC 8 cut(s) 101, 140, 287, 354, 369, 372, 375, 378
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 162
SetI ASST 5 cut(s) 117, 134, 156, 162, 373
SfaNI GCATC 5 cut(s) 56, 84, 265, 349, 355
Sse9I AATT 2 cut(s) 36, 258
SsiI CCGC 4 cut(s) 101, 165, 286, 377
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 309, 339
TasI AATT 2 cut(s) 36, 258
TauI GCSGC 3 cut(s) 103, 289, 380
TfiI GAWTC 3 cut(s) 70, 208, 243
TseI GCWGC 5 cut(s) 139, 353, 368, 371, 374
XceI RCATGY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.