Rroxscaffold_7G00169860

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002909
Physical Location & Seq
Forward (+)
10368918 .. 10370704
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169860.1

Sequence Viewer

Length: 390 bp
ATGGACGGTCTCACCGAAGCAGTGAACGACTTGCACATCACCGATTCGGCGGCCAACAAGAAGAACCGCATCCAAGTCTCAAACACCAAGAAGCCCCTCTTCTTCTATGTCAATCTCGCCAAGAAGTACATGCAGCTCAACAATGAGGTGGAGCTTTCCGGTCTCGGAATGGCTATTGCTACAGTTGTGACCATTGCTGAGATTCTCAAGAACAATGGATTGGCTGTTGAGAAGAAGATCATCACCAAAACTGTTGACATGAGGGAGGATGCAGGAGGGCGCCCAATTCAGAAAGCTAAGATTGAGATACTTCTGGGAAAGTCAGACAAGTTTGACGAGATAATGGCTGCTGCTGCCGAGGAAGCCAATGAATATGAGGAGCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

129

Amino Acids

14.23

Weight (kDa)

5.26

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 22 - 82 2.9e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AciI CCGC 2 cut(s) 50, 67
AcoI YGGCCR 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 136, 154, 296
AluI AGCT 3 cut(s) 136, 154, 296
Alw26I GTCTC 3 cut(s) 14, 82, 167
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 4 cut(s) 133, 347, 350, 353
AspLEI GCGC 1 cut(s) 282
AsuHPI GGTGA 3 cut(s) 4, 31, 235
BanI GGYRCC 1 cut(s) 279
BbvI GCAGC 4 cut(s) 145, 334, 337, 340
BcoDI GTCTC 3 cut(s) 14, 82, 167
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 283
BisI GCNGC 5 cut(s) 51, 134, 348, 351, 354
BlsI GCNGC 5 cut(s) 52, 135, 349, 352, 355
BmiI GGNNCC 1 cut(s) 281
BmsI GCATC 2 cut(s) 78, 259
BpuEI CTTGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 2 cut(s) 14, 167
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 69, 274
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 145, 334, 337, 340
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 14, 82, 167
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 2 cut(s) 14, 167
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 2 cut(s) 50, 67
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 279
BspTNI GGTCTC 2 cut(s) 14, 167
BsrDI GCAATG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 8, 184, 253
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 198, 297
BstF5I GGATG 2 cut(s) 69, 274
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 3 cut(s) 14, 82, 167
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 353, 362
BstNSI RCATGY 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 145, 334, 337, 340
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 2 cut(s) 69, 274
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CfoI GCGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 130, 259
CviJI RGCY 9 cut(s) 53, 94, 136, 154, 173, 224, 296, 347, 365
CviKI_1 RGCY 9 cut(s) 53, 94, 136, 154, 173, 224, 296, 347, 365
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 198, 297
DinI GGCGCC 1 cut(s) 281
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco31I GGTCTC 2 cut(s) 14, 167
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
FaeI CATG 2 cut(s) 133, 262
FaiI YATR 4 cut(s) 108, 131, 260, 375
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 2 cut(s) 129, 258
Fnu4HI GCNGC 5 cut(s) 51, 134, 348, 351, 354
FokI GGATG 2 cut(s) 56, 281
Fsp4HI GCNGC 5 cut(s) 51, 134, 348, 351, 354
GlaI GCGC 1 cut(s) 281
GluI GCNGC 5 cut(s) 51, 134, 348, 351, 354
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 2 cut(s) 133, 262
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 44, 202
HpaII CCGG 1 cut(s) 159
HphI GGTGA 3 cut(s) 4, 31, 235
Hpy166II GTNNAC 2 cut(s) 25, 256
Hpy188I TCNGA 3 cut(s) 167, 291, 325
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 25, 256
HpyCH4III ACNGT 3 cut(s) 8, 184, 253
HpyCH4V TGCA 3 cut(s) 34, 133, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 362
HpyF3I CTNAG 2 cut(s) 198, 297
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 2 cut(s) 133, 262
HspAI GCGC 1 cut(s) 280
KasI GGCGCC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 151, 379
LpnPI CCDG 3 cut(s) 172, 258, 299
Lsp1109I GCAGC 4 cut(s) 145, 334, 337, 340
LweI GCATC 2 cut(s) 78, 259
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 5 cut(s) 73, 91, 94, 244, 247
MluCI AATT 1 cut(s) 285
Mly113I GGCGCC 1 cut(s) 280
MnlI CCTC 7 cut(s) 107, 139, 255, 259, 269, 352, 370
MspI CCGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 353, 362
NarI GGCGCC 1 cut(s) 280
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 133, 262
NlaIV GGNNCC 1 cut(s) 281
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 2 cut(s) 44, 202
PkrI GCNGC 5 cut(s) 52, 135, 349, 352, 355
PluTI GGCGCC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 5 cut(s) 51, 134, 348, 351, 354
Sau3AI GATC 1 cut(s) 237
SetI ASST 4 cut(s) 138, 150, 156, 298
SfaNI GCATC 2 cut(s) 78, 259
SfcI CTRYAG 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 285
SsiI CCGC 2 cut(s) 50, 67
SspDI GGCGCC 1 cut(s) 279
TaaI ACNGT 3 cut(s) 8, 184, 253
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 44, 202
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 4 cut(s) 133, 347, 350, 353
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 27
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.