AT2G34160

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002909
Physical Location & Seq
Forward (+)
14426108 .. 14427488
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34160.1

Sequence Viewer

Length: 393 bp
ATGGAAGAGATCACCGATGGAGTGAACAACATGAACTTAGCCACCGATTCGCAGAAGAAAAACCGGATTCAGGTTTCCAACACTAAGAAACCATTGTTCTTCTATGTCAATCTCGCCAAGAGGTATATGCAGCAGTACAATGATGTTGAATTGTCTGCCCTTGGCATGGCCATTGCAACTGTTGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAAGATCATGACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGATTGAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCAGCCAATGAAGAAAAAGAAGATGCAGAAGCTCAGGTGCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

5.28

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 21 - 80 4.4e-11 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 70, 166
AgsI TTSAA 2 cut(s) 149, 246
AluBI AGCT 2 cut(s) 293, 377
AluI AGCT 2 cut(s) 293, 377
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 130, 344, 347
AsuHPI GGTGA 1 cut(s) 4
BalI TGGCCA 1 cut(s) 170
BbvI GCAGC 3 cut(s) 142, 331, 359
BccI CCATC 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 3 cut(s) 131, 345, 348
BlsI GCNGC 3 cut(s) 132, 346, 349
BmsI GCATC 2 cut(s) 256, 358
Bpu10I CCTNAGC 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 166
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 70, 166
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 142, 331, 359
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 70, 166
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 9, 234
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 9, 234
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 181, 190, 250
BstACI GRCGYC 1 cut(s) 277
BstDEI CTNAG 4 cut(s) 37, 84, 294, 378
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 12, 237
BstMBI GATC 2 cut(s) 9, 234
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 3 cut(s) 142, 331, 359
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 268
CciI TCATGA 1 cut(s) 237
Csp6I GTAC 1 cut(s) 136
CviAII CATG 3 cut(s) 31, 166, 238
CviJI RGCY 6 cut(s) 41, 170, 293, 344, 350, 377
CviKI_1 RGCY 6 cut(s) 41, 170, 293, 344, 350, 377
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 4 cut(s) 37, 84, 294, 378
DpnI GATC 2 cut(s) 11, 236
DpnII GATC 2 cut(s) 9, 234
EaeI YGGCCR 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 34, 169, 241
FaiI YATR 6 cut(s) 32, 105, 126, 128, 167, 239
FatI CATG 3 cut(s) 30, 165, 237
Fnu4HI GCNGC 3 cut(s) 131, 345, 348
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 131, 345, 348
GluI GCNGC 3 cut(s) 131, 345, 348
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 3 cut(s) 34, 169, 241
HinfI GANTC 2 cut(s) 47, 67
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 181, 190, 250
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 7 cut(s) 130, 176, 269, 286, 347, 371, 385
HpyF3I CTNAG 4 cut(s) 37, 84, 294, 378
HpySE526I ACGT 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 3 cut(s) 34, 169, 241
Kzo9I GATC 2 cut(s) 9, 234
LpnPI CCDG 4 cut(s) 56, 77, 294, 365
Lsp1109I GCAGC 3 cut(s) 142, 331, 359
LweI GCATC 2 cut(s) 256, 358
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 184, 190
MalI GATC 2 cut(s) 11, 236
MboI GATC 2 cut(s) 9, 234
MboII GAAGA 8 cut(s) 17, 67, 91, 217, 241, 244, 368, 377
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 114, 266
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 64
NdeII GATC 2 cut(s) 9, 234
NlaIII CATG 3 cut(s) 34, 169, 241
PagI TCATGA 1 cut(s) 237
PfeI GAWTC 2 cut(s) 47, 67
PkrI GCNGC 3 cut(s) 132, 346, 349
PstI CTGCAG 1 cut(s) 349
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 3 cut(s) 131, 345, 348
Sau3AI GATC 2 cut(s) 9, 234
SetI ASST 6 cut(s) 75, 125, 280, 295, 379, 384
SfaNI GCATC 2 cut(s) 256, 358
SfcI CTRYAG 1 cut(s) 345
Sse9I AATT 1 cut(s) 149
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 181, 190, 250
TaiI ACGT 1 cut(s) 280
TasI AATT 1 cut(s) 149
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 47, 67
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 3 cut(s) 130, 344, 347
TspDTI ATGAA 3 cut(s) 47, 348, 369
ZraI GACGTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.