Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Forward (+)

19471718 .. 19474035

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGGAGATAACTGAAGGCGTGAACAATATCACCGTCAATGCCTCCGATTCGCACAAGAAGAACCGAATTCAGGTATCGAATACCAAGAAGCCACTATTCTTCTATGTAAATCTTGCCAAGAGGTATATGCAACAGTACAATGAGGTGGAGCTCTCTGCTTTGGGAATGGCTATTGCCACAGTTGTCACAATCGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAGAAGAAAATCATGACATCGACTGTTGACATAAAGGATGATTCTAGGGGAAGACCGGTGCAAAAGGCCAAGATTGAGATAGTACTTGGGAAGTCGGAAGACTTTGATGACTTGATGGCCGCTGCAGCTGAGGAGAGGTTGATTGCAGCTGCGGAGGAGCAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

132

Amino Acids

14.52

Weight (kDa)

5.26

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	348, 380
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	69, 201
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	140, 312
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgeI	ACCGGT	1 cut(s)	283
AluBI	AGCT	4 cut(s)	154, 356, 377, 393
AluI	AGCT	4 cut(s)	154, 356, 377, 393
Alw21I	GWGCWC	1 cut(s)	156
AoxI	GGCC	2 cut(s)	294, 345
ApeKI	GCWGC	4 cut(s)	350, 353, 374, 377
ApoI	RAATTY	2 cut(s)	69, 201
AsiGI	ACCGGT	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	286, 333
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	337, 364, 365, 386
BccI	CCATC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	5 cut(s)	348, 351, 354, 375, 378
BlsI	GCNGC	5 cut(s)	349, 352, 355, 376, 379
BmcAI	AGTACT	1 cut(s)	312
BpiI	GAAGAC	2 cut(s)	286, 333
Bpu10I	CCTNAGC	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	20, 374
BseXI	GCAGC	4 cut(s)	337, 364, 365, 386
BshFI	GGCC	2 cut(s)	296, 347
BshTI	ACCGGT	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	73
BsnI	GGCC	2 cut(s)	296, 347
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	348, 380
BspANI	GGCC	2 cut(s)	296, 347
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	283
Bst4CI	ACNGT	4 cut(s)	37, 138, 184, 253
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	337, 364, 365, 386
BstV2I	GAAGAC	2 cut(s)	286, 333
BsuRI	GGCC	2 cut(s)	296, 347
BtsCI	GGATG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	139, 311
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	94, 154, 173, 224, 296, 347, 356, 377, 393
CviKI_1	RGCY	9 cut(s)	94, 154, 173, 224, 296, 347, 356, 377, 393
CviQI	GTAC	2 cut(s)	139, 311
DdeI	CTNAG	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	244
FaiI	YATR	5 cut(s)	108, 129, 131, 242, 260
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	348, 351, 354, 375, 378
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	348, 351, 354, 375, 378
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	5 cut(s)	348, 351, 354, 375, 378
HaeIII	GGCC	2 cut(s)	296, 347
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	50, 269
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	25, 256
Hpy188I	TCNGA	3 cut(s)	49, 207, 325
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	25, 256
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	4 cut(s)	37, 138, 184, 253
HpyCH4V	TGCA	4 cut(s)	133, 289, 353, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	151, 385
LpnPI	CCDG	3 cut(s)	59, 206, 297
Lsp1109I	GCAGC	4 cut(s)	337, 364, 365, 386
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	187
MboII	GAAGA	5 cut(s)	73, 94, 244, 291, 338
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	69, 201
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	55, 117, 139, 352, 357, 376
MspA1I	CMGCKG	3 cut(s)	350, 356, 377
MspI	CCGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	50, 269
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	5 cut(s)	349, 352, 355, 376, 379
Psp124BI	GAGCTC	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	355
PvuII	CAGCTG	2 cut(s)	356, 377
RsaI	GTAC	2 cut(s)	140, 312
RsaNI	GTAC	2 cut(s)	139, 311
SacI	GAGCTC	1 cut(s)	156
SatI	GCNGC	5 cut(s)	348, 351, 354, 375, 378
ScaI	AGTACT	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	8 cut(s)	78, 128, 150, 156, 358, 368, 379, 395
SfcI	CTRYAG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	69, 201
SsiI	CCGC	2 cut(s)	348, 380
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	37, 138, 184, 253
TaqI	TCGA	2 cut(s)	80, 248
TasI	AATT	2 cut(s)	69, 201
TatI	WGTACW	2 cut(s)	138, 310
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	50, 269
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	350, 353, 374, 377
Tsp45I	GTSAC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	69, 201
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.