Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Reverse (-)

19730693 .. 19731622

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGGGATGGTGCACTTTACGGAAAAAAAGATAGATATCGATGTATCTGATGCATTGAACAGGAAGTTTCAGTGTGCAACATTACAGCGTATGTTTGCTATACTGCTGGAGCACTACAAAGGCAAATGGCCGCTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCTAGCCTGTCTTAGAGAAATCCCAGCCCTATTCTCAGCAGCTATTGCCACAATTGTCACAATTGCGGAAATTCCTAAGAACAATGAGCTGGCTGTTGAGAAAAAAATCATGACATCAACTGTTGACATAAAGGATGATTCTAAAGGGAGACCAGTCCAAGAAGCCAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

114

Amino Acids

12.74

Weight (kDa)

9.07

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	2 cut(s)	134, 233
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	152
AluBI	AGCT	2 cut(s)	209, 256
AluI	AGCT	2 cut(s)	209, 256
Alw21I	GWGCWC	2 cut(s)	18, 117
Alw26I	GTCTC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	18, 117
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	134, 207
BlsI	GCNGC	2 cut(s)	135, 208
BmgBI	CACGTC	1 cut(s)	152
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	15, 307
BseJI	GATNNNNATC	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	133
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	18, 117
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	18, 117
BspACI	CCGC	2 cut(s)	134, 233
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	215
BspDI	ATCGAT	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	143, 179, 202, 243
BstF5I	GGATG	2 cut(s)	15, 307
BstMAI	GTCTC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 212
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	133
BsuTUI	ATCGAT	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	15, 307
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	42
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	8 cut(s)	133, 142, 173, 194, 209, 256, 260, 332
CviKI_1	RGCY	8 cut(s)	133, 142, 173, 194, 209, 256, 260, 332
DdeI	CTNAG	4 cut(s)	143, 179, 202, 243
EaeI	YGGCCR	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	280
FaiI	YATR	5 cut(s)	95, 104, 278, 296, 340
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	134, 207
FokI	GGATG	2 cut(s)	22, 314
Fsp4HI	GCNGC	2 cut(s)	134, 207
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	134, 207
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	16, 149, 292
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	3 cut(s)	16, 149, 292
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	16, 56, 80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 212
HpyF3I	CTNAG	4 cut(s)	143, 179, 202, 243
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	8 cut(s)	49, 95, 124, 140, 187, 204, 242, 333
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	223
MbiI	CCGCTC	1 cut(s)	136
MfeI	CAATTG	3 cut(s)	159, 219, 228
MhlI	GDGCHC	2 cut(s)	18, 117
MluCI	AATT	4 cut(s)	159, 219, 228, 237
Mph1103I	ATGCAT	1 cut(s)	58
MunI	CAATTG	3 cut(s)	159, 219, 228
MwoI	GCNNNNNNNGC	2 cut(s)	139, 212
NlaIII	CATG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	58
PagI	TCATGA	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	135, 208
PspFI	CCCAGC	1 cut(s)	190
SatI	GCNGC	2 cut(s)	134, 207
SduI	GDGCHC	2 cut(s)	18, 117
SetI	ASST	4 cut(s)	154, 211, 258, 339
SfaNI	GCATC	1 cut(s)	43
Sse9I	AATT	4 cut(s)	159, 219, 228, 237
SsiI	CCGC	2 cut(s)	134, 233
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	42
TasI	AATT	4 cut(s)	159, 219, 228, 237
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	80
VneI	GTGCAC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	237
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.