Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Forward (+)

13924446 .. 13925573

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGTCGAGTGCGATTGTTGTTGTTGCGGATGGGATTAAGGCTACGGTGACGGTGAACGACAACAAGCCTGTTGTCGTTGCTACTGGCGGTGGTGGCGAGGCCATTGCTACCTGCGGTGTTGGGGAGGCCATTGCTACATGCGGTGTTGGCGAGGCCATTGCTACATGCGACGGTGGGGATGTTGCTACCGCTGAGACTCAGAAGACGAAGAAGCTGAAGAACAAGAATCGGATCCACGTTTCGCACACCAAGCGTCCATTCTTCTTCTACTGCAATCTTGCCAAGAGGTACATCAAGCAGTACAATGCAGTTGAGCTCTCTGCATTGGGAATGGGTACCGACAACTTGTTCGATCTTCCTCCTTTCCGTTTGCATGTATATTTGTTTATGTTATTTTTCCGTCATCGACAATATTGGCTGCAGTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

145

Amino Acids

15.75

Weight (kDa)

8.93

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	338
AciI	CCGC	5 cut(s)	29, 90, 117, 144, 192
AclWI	GGATC	2 cut(s)	229, 242
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	3 cut(s)	293, 305, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	217, 319
AluI	AGCT	2 cut(s)	217, 319
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	229, 242
AoxI	GGCC	3 cut(s)	102, 129, 156
ApeKI	GCWGC	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
Asp718I	GGTACC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	61, 67
BamHI	GGATCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	4 cut(s)	89, 123, 143, 177
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	236, 340
BpiI	GAAGAC	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	3 cut(s)	105, 132, 159
BseGI	GGATG	2 cut(s)	37, 187
BseMI	GCAATG	3 cut(s)	105, 132, 159
BseMII	CTCAG	2 cut(s)	186, 215
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	3 cut(s)	104, 131, 158
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	104, 131, 158
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	234, 355
BspACI	CCGC	5 cut(s)	29, 90, 117, 144, 192
BspANI	GGCC	3 cut(s)	104, 131, 158
BspCNI	CTCAG	2 cut(s)	187, 214
BspLI	GGNNCC	2 cut(s)	236, 340
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	229, 242
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	3 cut(s)	105, 132, 159
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	234, 355
Bst4CI	ACNGT	3 cut(s)	49, 55, 176
BstDEI	CTNAG	3 cut(s)	195, 201, 432
BstF5I	GGATG	2 cut(s)	37, 187
BstKTI	GATC	2 cut(s)	237, 358
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	234, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 150, 253
BstNSI	RCATGY	3 cut(s)	144, 171, 380
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	104, 131, 158
BtsCI	GGATG	2 cut(s)	37, 187
BveI	ACCTGC	1 cut(s)	122
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	292, 304, 339
CviAII	CATG	3 cut(s)	141, 168, 377
CviJI	RGCY	8 cut(s)	44, 70, 104, 131, 158, 217, 319, 421
CviKI_1	RGCY	8 cut(s)	44, 70, 104, 131, 158, 217, 319, 421
CviQI	GTAC	3 cut(s)	292, 304, 339
DdeI	CTNAG	3 cut(s)	195, 201, 432
DpnI	GATC	2 cut(s)	236, 357
DpnII	GATC	2 cut(s)	234, 355
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	3 cut(s)	144, 171, 380
FaiI	YATR	5 cut(s)	142, 169, 378, 382, 392
FatI	CATG	3 cut(s)	140, 167, 376
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	44, 194
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	104, 131, 158
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	144, 171, 380
HinfI	GANTC	3 cut(s)	5, 199, 229
HphI	GGTGA	2 cut(s)	61, 67
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	204, 234
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	49, 55, 176
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	5 cut(s)	276, 311, 326, 376, 424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 150, 253
HpyF3I	CTNAG	3 cut(s)	195, 201, 432
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	144, 171, 380
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	234, 355
LpnPI	CCDG	3 cut(s)	72, 84, 127
Lsp1109I	GCAGC	1 cut(s)	408
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	236, 357
MboI	GATC	2 cut(s)	234, 355
MboII	GAAGA	6 cut(s)	217, 223, 232, 256, 259, 350
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	14, 193
MnlI	CCTC	5 cut(s)	94, 121, 148, 282, 372
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	96, 150, 253
NdeII	GATC	2 cut(s)	234, 355
NlaIII	CATG	3 cut(s)	144, 171, 380
NlaIV	GGNNCC	2 cut(s)	236, 340
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	3 cut(s)	144, 171, 380
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	2 cut(s)	13, 193
PpsI	GAGTC	2 cut(s)	13, 193
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	236, 340
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	3 cut(s)	293, 305, 340
RsaNI	GTAC	3 cut(s)	292, 304, 339
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	234, 355
SchI	GAGTC	2 cut(s)	14, 193
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	5 cut(s)	116, 219, 243, 293, 321
SfcI	CTRYAG	1 cut(s)	422
SsiI	CCGC	5 cut(s)	29, 90, 117, 144, 192
SspI	AATATT	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	49, 55, 176
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	8, 354, 409
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	49
TspGWI	ACGGA	2 cut(s)	359, 392
XceI	RCATGY	3 cut(s)	144, 171, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.