Rh2BG387600

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002909
Physical Location & Seq
Reverse (-)
55136051 .. 55139607
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG387600.1

Sequence Viewer

Length: 360 bp
ATGGAGGCTGTTGTAGAGATTACCGAGGCTATGAACAACGTCACCATCAACAACTCAGATTCACACAAGAAGAACCGAATTCAGGTCTCGAACACCAAAAAGCCCCTCTTCTTCTACGTCAATCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTGGAGCTATCTGCCTTGGGAATGGCTATTGCCACAGTTGTGACAATTGCAGAAATTCTCAAGAACAATGGGCTGGCTGTTGAGAAAAAAATCATGACATCAACTGTTGACATAAAGGATGATTCTAGAGGGAGACCAGTCCAAAAAGCCAAGGTATTTGAATATGATATTCTATTAGGAAATTCCCTGTTAACTTGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

8.86

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 25 - 86 1e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 78, 210, 337
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 317
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 91, 283
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 3 cut(s) 78, 210, 337
AsuHPI GGTGA 1 cut(s) 34
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 91, 283
BfaI CTAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 200
BsaI GGTCTC 2 cut(s) 91, 283
BsaJI CCNNGG 3 cut(s) 24, 171, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 24, 171, 306
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 91, 283
Bso31I GGTCTC 2 cut(s) 91, 283
BspCNI CTCAG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 249
BspTNI GGTCTC 2 cut(s) 91, 283
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 24, 171, 306
BssT1I CCWWGG 2 cut(s) 171, 306
Bst4CI ACNGT 2 cut(s) 193, 262
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 91, 283
BstV1I GCAGC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 249
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 250
CviJI RGCY 8 cut(s) 8, 29, 103, 163, 182, 229, 233, 305
CviKI_1 RGCY 8 cut(s) 8, 29, 103, 163, 182, 229, 233, 305
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 171, 306
Eco31I GGTCTC 2 cut(s) 91, 283
EcoRI GAATTC 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 171, 306
ErhI CCWWGG 2 cut(s) 171, 306
FaeI CATG 1 cut(s) 253
FaiI YATR 6 cut(s) 32, 138, 140, 251, 269, 321
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 253
HincII GTYRAC 2 cut(s) 265, 348
HindII GTYRAC 2 cut(s) 265, 348
HinfI GANTC 2 cut(s) 59, 278
HpaI GTTAAC 1 cut(s) 348
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 265, 348
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 4 cut(s) 88, 217, 250, 282
Hpy8I GTNNAC 2 cut(s) 265, 348
HpyCH4III ACNGT 2 cut(s) 193, 262
HpyCH4IV ACGT 2 cut(s) 39, 117
HpyCH4V TGCA 2 cut(s) 142, 206
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 2 cut(s) 39, 117
Hsp92II CATG 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 68, 215, 306, 356
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 39, 117
MaeIII GTNAC 2 cut(s) 40, 196
MboII GAAGA 3 cut(s) 82, 100, 103
MfeI CAATTG 1 cut(s) 201
MluCI AATT 4 cut(s) 78, 201, 210, 337
MnlI CCTC 5 cut(s) 19, 116, 126, 148, 278
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 194
MunI CAATTG 1 cut(s) 201
NlaIII CATG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 40, 196
OliI CACNNNNGTG 1 cut(s) 194
PagI TCATGA 1 cut(s) 249
PfeI GAWTC 2 cut(s) 59, 278
PkrI GCNGC 1 cut(s) 144
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 143
SetI ASST 7 cut(s) 42, 87, 120, 137, 159, 165, 312
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 4 cut(s) 78, 201, 210, 337
SspMI CTAG 1 cut(s) 282
StyI CCWWGG 2 cut(s) 171, 306
TaaI ACNGT 2 cut(s) 193, 262
TaiI ACGT 2 cut(s) 42, 120
TaqI TCGA 1 cut(s) 89
TasI AATT 4 cut(s) 78, 201, 210, 337
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 59, 278
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TseFI GTSAC 2 cut(s) 40, 196
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 2 cut(s) 40, 196
TspDTI ATGAA 1 cut(s) 47
XapI RAATTY 3 cut(s) 78, 210, 337
XbaI TCTAGA 1 cut(s) 281
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.