Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Forward (+)

6088007 .. 6091021

Gene Structure 3015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G082200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGGAGATTACTGAGGGTGTGAACAACATCATCATCGCAGATTCACACAAGAAGAACCGAATTCAGGTCTCGAATACCAAAAAGCCCCTCTTCTTCTATGTTAATCTTGCCAAGAGGTATATGCAACAGTATAATGAGGTGGAGCTCTCTGCTTTAGGAATGGCTATTGCCACTGTTGTTACAATTGCAGAAATTCTGAAAAACAATGGGCTGGCCGTTGAGAAAAAAATCATGACGTCGACTGTTGACATAAAGGATGATTCTAGAGGGAGACCAGTCCAGAAAGCCAAGATTGAAATTATACTTGGGAAGTCGGAAAACTTTGATGATTTGATGGCCGCTGCAGCTGAGGAGAGGGAAATTGCAGGTGCTGAGGAGCTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

5.27

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AatII	GACGTC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	1 cut(s)	342
AcoI	YGGCCR	2 cut(s)	216, 339
AcsI	RAATTY	2 cut(s)	63, 195
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	148, 350, 382, 387
AluI	AGCT	4 cut(s)	148, 350, 382, 387
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	76, 268
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	216, 339
ApeKI	GCWGC	2 cut(s)	344, 347
ApoI	RAATTY	2 cut(s)	63, 195
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvCI	CCTCAGC	2 cut(s)	351, 375
BbvI	GCAGC	2 cut(s)	331, 359
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	76, 268
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	3 cut(s)	342, 345, 348
BlpI	GCTNAGC	1 cut(s)	383
BlsI	GCNGC	3 cut(s)	343, 346, 349
Bpu10I	CCTNAGC	2 cut(s)	351, 375
Bpu1102I	GCTNAGC	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	2 cut(s)	76, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	3 cut(s)	6, 342, 366
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	2 cut(s)	20, 368
BseXI	GCAGC	2 cut(s)	331, 359
BshFI	GGCC	2 cut(s)	218, 341
BsiHKAI	GWGCWC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	76, 268
BsnI	GGCC	2 cut(s)	218, 341
Bso31I	GGTCTC	2 cut(s)	76, 268
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	2 cut(s)	218, 341
BspCNI	CTCAG	3 cut(s)	7, 343, 367
BspHI	TCATGA	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	359
BspTNI	GGTCTC	2 cut(s)	76, 268
BsrI	ACTGG	1 cut(s)	278
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	132, 178, 247
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	4 cut(s)	15, 351, 375, 383
BstF5I	GGATG	1 cut(s)	265
BstMAI	GTCTC	2 cut(s)	76, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	331, 359
BsuRI	GGCC	2 cut(s)	218, 341
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	234
CviAII	CATG	1 cut(s)	235
DdeI	CTNAG	4 cut(s)	15, 351, 375, 383
EaeI	YGGCCR	2 cut(s)	216, 339
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	2 cut(s)	76, 268
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	238
FaiI	YATR	7 cut(s)	102, 123, 125, 135, 236, 254, 305
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	342, 345, 348
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	342, 345, 348
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	3 cut(s)	342, 345, 348
HaeIII	GGCC	2 cut(s)	218, 341
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	238
HincII	GTYRAC	2 cut(s)	243, 250
HindII	GTYRAC	2 cut(s)	243, 250
HinfI	GANTC	2 cut(s)	44, 263
Hpy166II	GTNNAC	3 cut(s)	25, 243, 250
Hpy188I	TCNGA	2 cut(s)	201, 319
Hpy188III	TCNNGA	4 cut(s)	73, 235, 267, 283
Hpy8I	GTNNAC	3 cut(s)	25, 243, 250
Hpy99I	CGWCG	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	132, 178, 247
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	4 cut(s)	127, 191, 347, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	4 cut(s)	15, 351, 375, 383
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	145, 379
LpnPI	CCDG	5 cut(s)	53, 200, 291, 296, 354
Lsp1109I	GCAGC	2 cut(s)	331, 359
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	67, 85, 88
MfeI	CAATTG	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	5 cut(s)	63, 186, 195, 300, 363
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	10, 101, 111, 133, 263, 346, 351, 370
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	344, 350
MunI	CAATTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	238
PagI	TCATGA	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	44, 263
PkrI	GCNGC	3 cut(s)	343, 346, 349
Psp124BI	GAGCTC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	342, 345, 348
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	9 cut(s)	72, 122, 144, 150, 242, 352, 373, 384, 389
SfcI	CTRYAG	1 cut(s)	345
Sse9I	AATT	5 cut(s)	63, 186, 195, 300, 363
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	132, 178, 247
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	74, 242
TasI	AATT	5 cut(s)	63, 186, 195, 300, 363
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	44, 263
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	2 cut(s)	344, 347
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	63, 195
XbaI	TCTAGA	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	267
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.