MD08G1147300.v1.1

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0002909
Physical Location & Seq
Forward (+)
14853893 .. 14856040
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1147300.v1.1.491

Sequence Viewer

Length: 402 bp
ATGGAGGGTCTCGCAGAAGGAGTGAACAACTTGCGAATTACAGACGCATCATACAACAAGAAGAAGAATCGCATCCAAGTCTCCAACACCAAAAAGCCCCTCTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCACAACAATGAGGTGGAGCTCTCCGCTCTTGGAATGGCTATTGCCACAGTTGTTACCATTGCTGAGATTCTGAAGAACAATGGATTGGCTTTGGAGAAGAGAATCATGACTTCTACAATTGACATGAGGGAAGATGCAGGAGGGCGGCCCATTCAAAAGGCAAAGATTGAAATACTGCTTGGAAAGTCAGAGAAGTTCGACGAGATAATGGCTGCTGATGCTGATGCAGCTGCTGCGGCCGAGGAAGGCATTGAGTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

5.56

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 23 - 75 1.5e-12 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 3 cut(s) 162, 283, 374
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 2 cut(s) 293, 308
AjuI GAANNNNNNNTTGG 4 cut(s) 206, 238, 300, 332
AluBI AGCT 2 cut(s) 157, 368
AluI AGCT 2 cut(s) 157, 368
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 14, 85
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 2 cut(s) 284, 375
ApeKI GCWGC 5 cut(s) 136, 350, 365, 368, 371
AspS9I GGNCC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 148, 337, 355, 358, 377
BcoDI GTCTC 2 cut(s) 14, 85
BisI GCNGC 7 cut(s) 137, 284, 351, 366, 369, 372, 375
BlsI GCNGC 7 cut(s) 138, 285, 352, 367, 370, 373, 376
BmgT120I GGNCC 1 cut(s) 285
BmsI GCATC 5 cut(s) 56, 81, 262, 346, 352
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 5 cut(s) 148, 337, 355, 358, 377
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 286, 377
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 14, 85
BsnI GGCC 2 cut(s) 286, 377
Bso31I GGTCTC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 159
BspACI CCGC 3 cut(s) 162, 283, 374
BspANI GGCC 2 cut(s) 286, 377
BspCNI CTCAG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 107, 230
BstAPI GCANNNNNTGC 1 cut(s) 371
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 14, 85
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 4 cut(s) 356, 365, 371, 374
BstNSI RCATGY 1 cut(s) 136
BstV1I GCAGC 5 cut(s) 148, 337, 355, 358, 377
BstZI CGGCCG 1 cut(s) 375
BsuRI GGCC 2 cut(s) 286, 377
BtsCI GGATG 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 130
CviAII CATG 3 cut(s) 133, 244, 262
CviJI RGCY 8 cut(s) 97, 157, 176, 227, 286, 350, 368, 377
CviKI_1 RGCY 8 cut(s) 97, 157, 176, 227, 286, 350, 368, 377
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 375
EagI CGGCCG 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 107, 230
EarI CTCTTC 2 cut(s) 107, 230
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 14
Eco52I CGGCCG 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 3 cut(s) 136, 247, 265
FaiI YATR 5 cut(s) 52, 134, 245, 263, 396
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FatI CATG 3 cut(s) 132, 243, 261
Fnu4HI GCNGC 7 cut(s) 137, 284, 351, 366, 369, 372, 375
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 7 cut(s) 137, 284, 351, 366, 369, 372, 375
GluI GCNGC 7 cut(s) 137, 284, 351, 366, 369, 372, 375
HaeIII GGCC 2 cut(s) 286, 377
HgaI GACGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 136, 247, 265
HinfI GANTC 3 cut(s) 67, 205, 240
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 210, 328
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 11, 377
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 136, 275, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 365, 371, 374
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 3 cut(s) 136, 247, 265
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 261
Lsp1109I GCAGC 5 cut(s) 148, 337, 355, 358, 377
LweI GCATC 5 cut(s) 56, 81, 262, 346, 352
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 190
MbiI CCGCTC 1 cut(s) 164
MboII GAAGA 7 cut(s) 73, 76, 94, 97, 223, 247, 281
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 36, 255
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 6 cut(s) 110, 120, 142, 258, 272, 373
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 368
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 356, 365, 371, 374
NlaIII CATG 3 cut(s) 136, 247, 265
NspI RCATGY 1 cut(s) 136
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 3 cut(s) 67, 205, 240
PkrI GCNGC 7 cut(s) 138, 285, 352, 367, 370, 373, 376
Psp124BI GAGCTC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 7 cut(s) 137, 284, 351, 366, 369, 372, 375
Sau96I GGNCC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 159
SetI ASST 5 cut(s) 114, 131, 153, 159, 370
SfaNI GCATC 5 cut(s) 56, 81, 262, 346, 352
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 2 cut(s) 36, 255
SsiI CCGC 3 cut(s) 162, 283, 374
SstI GAGCTC 1 cut(s) 159
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 36, 255
TauI GCSGC 2 cut(s) 286, 377
TfiI GAWTC 3 cut(s) 67, 205, 240
TseI GCWGC 5 cut(s) 136, 350, 365, 368, 371
XceI RCATGY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.