MD15G1123300.v1.1

Alba

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002909
Physical Location & Seq
Forward (+)
8932880 .. 8934862
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1123300.v1.1.491

Sequence Viewer

Length: 417 bp
ATGGAGGGTCTGGCAGAAGAAGTGAACAACTTGCAAATTACAGACGCATCGTACAACAAGAACAATAAGAATCGCATCCAAGTCTCCAACACCAAAAAGCCCGTCTTCTTCTATGTCAATCTCGCCAAGAGGTACATGCAGCAGAACAACGAGGTGGAGCTCTCCGCTCTCGGAATGGCTATTGCCACAGTGGTTACCATTGCCGAGATTCTGAAGAATAATGGATTGGCCGTTGAGAAGAGAATCATGACTTCGACAATTAACATGAGGGAGGATGCAGGAGGGCGGCCAATTCAAAAGGCAAAGATTGAAATACTGCTCGGAAAGTCAGAGAAGTTCGACGAGATAATGGCTGCTGATGCTGCTGCTGCGGCTGCTGCCGCCGCCGAGGAAGGCATTGAGTATGAGCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

139

Amino Acids

15.12

Weight (kDa)

5.11

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 24 - 78 2.2e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 167
AciI CCGC 5 cut(s) 165, 286, 371, 381, 384
AcoI YGGCCR 2 cut(s) 228, 287
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 2 cut(s) 53, 134
AgsI TTSAA 2 cut(s) 296, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 88
AoxI GGCC 2 cut(s) 228, 287
ApeKI GCWGC 7 cut(s) 139, 353, 362, 365, 368, 374, 377
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 7 cut(s) 151, 340, 349, 352, 355, 361, 364
BceAI ACGGC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 88
BmsI GCATC 4 cut(s) 56, 84, 265, 349
BpiI GAAGAC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 75, 280
BseMI GCAATG 1 cut(s) 198
BseXI GCAGC 7 cut(s) 151, 340, 349, 352, 355, 361, 364
BshFI GGCC 2 cut(s) 230, 289
BsiHKAI GWGCWC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 2 cut(s) 230, 289
Bsp1286I GDGCHC 1 cut(s) 162
BspACI CCGC 5 cut(s) 165, 286, 371, 381, 384
BspANI GGCC 2 cut(s) 230, 289
BspHI TCATGA 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 233
BstEII GGTNACC 1 cut(s) 193
BstF5I GGATG 2 cut(s) 75, 280
BstMAI GTCTC 1 cut(s) 88
BstMWI GCNNNNNNNGC 8 cut(s) 359, 362, 368, 371, 374, 377, 380, 383
BstNSI RCATGY 1 cut(s) 139
BstPI GGTNACC 1 cut(s) 193
BstV1I GCAGC 7 cut(s) 151, 340, 349, 352, 355, 361, 364
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 230, 289
BtsCI GGATG 2 cut(s) 75, 280
BtsIMutI CAGTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 246
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 52, 133
CviAII CATG 3 cut(s) 136, 247, 265
CviJI RGCY 7 cut(s) 100, 160, 179, 230, 289, 353, 374
CviKI_1 RGCY 7 cut(s) 100, 160, 179, 230, 289, 353, 374
CviQI GTAC 2 cut(s) 52, 133
EaeI YGGCCR 2 cut(s) 228, 287
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 3 cut(s) 139, 250, 268
FaiI YATR 5 cut(s) 114, 137, 248, 266, 405
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 3 cut(s) 135, 246, 264
FokI GGATG 2 cut(s) 62, 287
FriOI GRGCYC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 230, 289
HgaI GACGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 139, 250, 268
HinfI GANTC 3 cut(s) 70, 208, 243
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 173, 213, 323, 331
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 3 cut(s) 34, 139, 278
HpyF10VI GCNNNNNNNGC 8 cut(s) 359, 362, 368, 371, 374, 377, 380, 383
Hsp92II CATG 3 cut(s) 139, 250, 268
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 264
Lsp1109I GCAGC 7 cut(s) 151, 340, 349, 352, 355, 361, 364
LweI GCATC 4 cut(s) 56, 84, 265, 349
MaeIII GTNAC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 167
MboII GAAGA 5 cut(s) 29, 97, 100, 226, 250
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 3 cut(s) 36, 258, 291
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 6 cut(s) 123, 145, 261, 265, 275, 382
MseI TTAA 1 cut(s) 261
MwoI GCNNNNNNNGC 8 cut(s) 359, 362, 368, 371, 374, 377, 380, 383
NlaIII CATG 3 cut(s) 139, 250, 268
NmeAIII GCCGAG 2 cut(s) 229, 412
NspI RCATGY 1 cut(s) 139
PagI TCATGA 1 cut(s) 246
PfeI GAWTC 3 cut(s) 70, 208, 243
Psp124BI GAGCTC 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 193
RsaI GTAC 2 cut(s) 53, 134
RsaNI GTAC 2 cut(s) 52, 133
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 261
SduI GDGCHC 1 cut(s) 162
SetI ASST 3 cut(s) 134, 156, 162
SfaNI GCATC 4 cut(s) 56, 84, 265, 349
Sse9I AATT 3 cut(s) 36, 258, 291
SsiI CCGC 5 cut(s) 165, 286, 371, 381, 384
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 254, 339
TasI AATT 3 cut(s) 36, 258, 291
TauI GCSGC 4 cut(s) 289, 374, 383, 386
TfiI GAWTC 3 cut(s) 70, 208, 243
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 195
TseI GCWGC 7 cut(s) 139, 353, 362, 365, 368, 374, 377
TspRI CASTG 1 cut(s) 195
XceI RCATGY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.