Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Forward (+)

40051743 .. 40053741

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G478700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATGGTGTCACAGAGGGAGTGAACAACTTGCAGATCACGGACTCATCATACAACAACAAGAAGAATCGCATCCAAGTCTCAAATACCAAAAAGCCCCTCTTCTTCTATGTCAATCTTGCCAAGAGGTACATGGAGCAGAACAATGAGGTGGAGCTCTCTGCCCTTGGAATGGCTATTGCTACTGTTGTTACCATTGCTGAGATTCTGAAGAACAATGGATTGGCTTTCGAGAAAAAGATCACGACTTCTACAATTGACATGAGGGAGGATGCAGGGGGGCGGCCAATTCAAAAGGCAAAGATTGAAATACTGCTAGGAAAGTCTGAGAAGTTTGACGAGATAATGGCCGCTGATGCTGCTGCTGCTGCTGTTGCTGCAGAGGAAGCCCTTGAGTATGAGCAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

137

Amino Acids

14.93

Weight (kDa)

4.96

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	283, 351
AcoI	YGGCCR	2 cut(s)	284, 348
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	293, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	284, 348
ApeKI	GCWGC	5 cut(s)	359, 362, 365, 368, 377
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	5 cut(s)	346, 349, 352, 355, 364
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	7 cut(s)	284, 351, 360, 363, 366, 369, 378
BlsI	GCNGC	7 cut(s)	285, 352, 361, 364, 367, 370, 379
BmsI	GCATC	3 cut(s)	81, 262, 346
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	10, 72, 277
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	192, 318
BseXI	GCAGC	5 cut(s)	346, 349, 352, 355, 364
BshFI	GGCC	2 cut(s)	286, 350
BsiHKAI	GWGCWC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	286, 350
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	36, 240
BspACI	CCGC	2 cut(s)	283, 351
BspANI	GGCC	2 cut(s)	286, 350
BspCNI	CTCAG	2 cut(s)	193, 319
BspMAI	CTGCAG	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	36, 240
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	201, 327
BstF5I	GGATG	3 cut(s)	10, 72, 277
BstKTI	GATC	2 cut(s)	39, 243
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	36, 240
BstMWI	GCNNNNNNNGC	7 cut(s)	356, 359, 365, 368, 374, 377, 386
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	346, 349, 352, 355, 364
BsuRI	GGCC	2 cut(s)	286, 350
BtsCI	GGATG	3 cut(s)	10, 72, 277
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	133, 262
CviJI	RGCY	7 cut(s)	97, 157, 176, 227, 286, 350, 389
CviKI_1	RGCY	7 cut(s)	97, 157, 176, 227, 286, 350, 389
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	201, 327
DpnI	GATC	2 cut(s)	38, 242
DpnII	GATC	2 cut(s)	36, 240
EaeI	YGGCCR	2 cut(s)	284, 348
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	136, 265
FaiI	YATR	5 cut(s)	52, 111, 134, 263, 399
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	2 cut(s)	132, 261
Fnu4HI	GCNGC	7 cut(s)	284, 351, 360, 363, 366, 369, 378
FokI	GGATG	3 cut(s)	17, 59, 284
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	7 cut(s)	284, 351, 360, 363, 366, 369, 378
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	7 cut(s)	284, 351, 360, 363, 366, 369, 378
HaeIII	GGCC	2 cut(s)	286, 350
Hin1II	CATG	2 cut(s)	136, 265
HinfI	GANTC	3 cut(s)	44, 67, 205
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	210, 328
Hpy188III	TCNNGA	2 cut(s)	232, 244
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	34, 275, 380
HpyF10VI	GCNNNNNNNGC	7 cut(s)	356, 359, 365, 368, 374, 377, 386
HpyF3I	CTNAG	2 cut(s)	201, 327
Hsp92II	CATG	2 cut(s)	136, 265
Kzo9I	GATC	2 cut(s)	36, 240
LmnI	GCTCC	2 cut(s)	136, 154
LpnPI	CCDG	1 cut(s)	261
Lsp1109I	GCAGC	5 cut(s)	346, 349, 352, 355, 364
LweI	GCATC	3 cut(s)	81, 262, 346
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	10, 190
MalI	GATC	2 cut(s)	38, 242
MboI	GATC	2 cut(s)	36, 240
MboII	GAAGA	4 cut(s)	76, 94, 97, 223
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	255, 288
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	10, 110, 120, 142, 258, 262, 376
MspA1I	CMGCKG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	7 cut(s)	356, 359, 365, 368, 374, 377, 386
NdeII	GATC	2 cut(s)	36, 240
NlaIII	CATG	2 cut(s)	136, 265
NmuCI	GTSAC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	67, 205
PkrI	GCNGC	7 cut(s)	285, 352, 361, 364, 367, 370, 379
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	7 cut(s)	284, 351, 360, 363, 366, 369, 378
Sau3AI	GATC	2 cut(s)	36, 240
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	3 cut(s)	131, 153, 159
SfaNI	GCATC	3 cut(s)	81, 262, 346
SfcI	CTRYAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	255, 288
SsiI	CCGC	2 cut(s)	283, 351
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	255, 288
TauI	GCSGC	2 cut(s)	286, 353
TfiI	GAWTC	2 cut(s)	67, 205
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	5 cut(s)	359, 362, 365, 368, 377
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.