RLG00000011526

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002909
Physical Location & Seq
Forward (+)
10271373 .. 10272811
1439 bp
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UTR
Exon/CDS
Intron
RLM00000011526

Sequence Viewer

Length: 390 bp
ATGGACGGTCTCACGGAAGCAGTGAGCGACATGCACATAACCGATTCGGCGGCCAACAAGAAGAATCGCATCCAAGTCTCAAACACCAAGAAGCCCCTCTTCTTCTATGTCAATCTCGCCAAGAAGTACATGCAGCTCAACAATGAGGTGGAGCTTTCCGGTCTCGGAATGGCCATTGCTACAGTTGTTACCATTGCTGAGATTCTCAAGAACAATGGATTGGCTGTTGAGAAGAAGATCATCACCAAAACTGTTGACATGAGGGAGGATGCAGGAGGCCGCCCAATTCAGAAAGCTAAGATTGAGATACTTCTGGGAAAGTCAGACGAGTTTGACGAGATAATGGCTGCTGCTGCTGAGGAAGCCAATGAATATGAGGAGCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

4.96

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 22 - 82 2.9e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 280
AcoI YGGCCR 2 cut(s) 51, 171
AfaI GTAC 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 136, 154, 296
AluI AGCT 3 cut(s) 136, 154, 296
Alw26I GTCTC 3 cut(s) 14, 82, 167
AoxI GGCC 3 cut(s) 51, 171, 277
ApeKI GCWGC 4 cut(s) 133, 347, 350, 353
AsuHPI GGTGA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 4 cut(s) 145, 334, 337, 340
BcoDI GTCTC 3 cut(s) 14, 82, 167
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 6 cut(s) 51, 134, 280, 348, 351, 354
BlsI GCNGC 6 cut(s) 52, 135, 281, 349, 352, 355
BmsI GCATC 2 cut(s) 78, 259
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 191
BsaI GGTCTC 2 cut(s) 14, 167
BsaWI WCCGGW 1 cut(s) 158
Bse3DI GCAATG 2 cut(s) 174, 192
BseGI GGATG 2 cut(s) 69, 274
BseMI GCAATG 2 cut(s) 174, 192
BseMII CTCAG 2 cut(s) 189, 348
BseXI GCAGC 4 cut(s) 145, 334, 337, 340
BshFI GGCC 3 cut(s) 53, 173, 279
BsiSI CCGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 14, 82, 167
BsnI GGCC 3 cut(s) 53, 173, 279
Bso31I GGTCTC 2 cut(s) 14, 167
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 2 cut(s) 50, 280
BspANI GGCC 3 cut(s) 53, 173, 279
BspCNI CTCAG 2 cut(s) 190, 349
BspTNI GGTCTC 2 cut(s) 14, 167
BsrDI GCAATG 2 cut(s) 174, 192
BssMI GATC 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 8, 184, 253
Bst6I CTCTTC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 198, 297, 357
BstF5I GGATG 2 cut(s) 69, 274
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 3 cut(s) 14, 82, 167
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 353, 362
BstNSI RCATGY 2 cut(s) 34, 133
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 145, 334, 337, 340
BsuRI GGCC 3 cut(s) 53, 173, 279
BtsCI GGATG 2 cut(s) 69, 274
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 31, 130, 259
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 3 cut(s) 198, 297, 357
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 2 cut(s) 51, 171
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco31I GGTCTC 2 cut(s) 14, 167
FaeI CATG 3 cut(s) 34, 133, 262
FaiI YATR 6 cut(s) 32, 38, 108, 131, 260, 375
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 3 cut(s) 30, 129, 258
Fnu4HI GCNGC 6 cut(s) 51, 134, 280, 348, 351, 354
FokI GGATG 2 cut(s) 56, 281
Fsp4HI GCNGC 6 cut(s) 51, 134, 280, 348, 351, 354
GluI GCNGC 6 cut(s) 51, 134, 280, 348, 351, 354
HaeIII GGCC 3 cut(s) 53, 173, 279
HapII CCGG 1 cut(s) 159
Hin1II CATG 3 cut(s) 34, 133, 262
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 44, 64, 202
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 167, 291, 325
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 256
HpyCH4III ACNGT 3 cut(s) 8, 184, 253
HpyCH4V TGCA 3 cut(s) 34, 133, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 362
HpyF3I CTNAG 3 cut(s) 198, 297, 357
Hsp92II CATG 3 cut(s) 34, 133, 262
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 151, 379
LpnPI CCDG 3 cut(s) 172, 258, 299
Lsp1109I GCAGC 4 cut(s) 145, 334, 337, 340
LweI GCATC 2 cut(s) 78, 259
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 5 cut(s) 73, 91, 94, 244, 247
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 1 cut(s) 285
MluNI TGGCCA 1 cut(s) 173
MnlI CCTC 7 cut(s) 107, 139, 255, 259, 269, 352, 370
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 353, 362
NdeII GATC 1 cut(s) 237
NlaIII CATG 3 cut(s) 34, 133, 262
NspI RCATGY 2 cut(s) 34, 133
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 3 cut(s) 44, 64, 202
PkrI GCNGC 6 cut(s) 52, 135, 281, 349, 352, 355
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 6 cut(s) 51, 134, 280, 348, 351, 354
Sau3AI GATC 1 cut(s) 237
SetI ASST 4 cut(s) 138, 150, 156, 298
SfaNI GCATC 2 cut(s) 78, 259
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 285
SsiI CCGC 2 cut(s) 50, 280
TaaI ACNGT 3 cut(s) 8, 184, 253
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 126
TauI GCSGC 2 cut(s) 53, 282
TfiI GAWTC 3 cut(s) 44, 64, 202
TscAI CASTG 1 cut(s) 27
TseI GCWGC 4 cut(s) 133, 347, 350, 353
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 27
XceI RCATGY 2 cut(s) 34, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.