Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Reverse (-)

46433879 .. 46434079

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1378600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTTATTCCTACTATGATCATAATTGCTGAGAGTCTCAAGAGCAATGGAGTTGCTGTCGAGAAGAGCATAAGCACCTCTACTGTTGTCTCGAAGCTGGATGGCGAAGATGGACGGATTGTGTTTAAGGCTCTGTTGGCGATTTTGCTGGGAAAGGCTGAAGAACTCGAGGAGACCGCAGTTCCTGTGGCTGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

67

Amino Acids

6.87

Weight (kDa)

4.69

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	3 cut(s)	41, 94, 167
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	95, 104
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	41, 94, 167
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse3DI	GCAATG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	41, 94, 167
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	52
BssMI	GATC	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	3 cut(s)	41, 94, 167
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	185
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	4 cut(s)	97, 131, 158, 191
CviKI_1	RGCY	4 cut(s)	97, 131, 158, 191
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	167
FaeI	CATG	1 cut(s)	201
FaiI	YATR	4 cut(s)	17, 23, 71, 199
FatI	CATG	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	192
GsaI	CCCAGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	201
HinfI	GANTC	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	40, 61, 91
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	59
LpnPI	CCDG	2 cut(s)	83, 134
Lsp1109I	GCAGC	1 cut(s)	178
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	3 cut(s)	76, 119, 173
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	88, 163
MseI	TTAA	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	43
SetI	ASST	2 cut(s)	80, 99
Sfr274I	CTCGAG	1 cut(s)	167
SgeI	CNNG	8 cut(s)	52, 73, 103, 110, 161, 179, 181, 197
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	38, 167
SmoI	CTYRAG	2 cut(s)	38, 167
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	60, 92, 168
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.