AT1G29250

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002909
Physical Location & Seq
Reverse (-)
10223266 .. 10224799
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29250.1

Sequence Viewer

Length: 393 bp
ATGGAAGAGATCACGGAAGGAGTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAAGAATCGGATTCAAGTTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCAGTACACTGATGTCGAATTGTCTGCACTAGGAATGGCTATTGCCACTGTTGTTACGGTCGCTGAGATATTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATGACATCGACTGTGGATATCAAGGATGATTCAAGGGGTCGTCCTGTGCAGAAAGCTAAGATTGAGATCACGCTTGCCAAGTCTGAGAAGTTTGATGAACTAATGGCTGCAGCTAATGAAGAGAAGGAGGCTGCAGAAGCCCAAGAGCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

130

Amino Acids

14.57

Weight (kDa)

5.31

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 21 - 80 1.6e-11 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 125, 137
AgsI TTSAA 4 cut(s) 71, 205, 227, 270
AluBI AGCT 2 cut(s) 293, 350
AluI AGCT 2 cut(s) 293, 350
ApeKI GCWGC 4 cut(s) 130, 344, 347, 368
BbvI GCAGC 4 cut(s) 142, 331, 355, 359
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BfaI CTAG 2 cut(s) 161, 391
BfmI CTRYAG 2 cut(s) 345, 369
BisI GCNGC 4 cut(s) 131, 345, 348, 369
BlsI GCNGC 4 cut(s) 132, 346, 349, 370
BsaBI GATNNNNATC 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 302
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 302
BseMII CTCAG 2 cut(s) 186, 312
BseXI GCAGC 4 cut(s) 142, 331, 355, 359
BsgI GTGCAG 2 cut(s) 141, 305
Bsh1285I CGRYCG 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 192
Bsp143I GATC 3 cut(s) 9, 234, 303
BspCNI CTCAG 2 cut(s) 187, 313
BspHI TCATGA 1 cut(s) 237
BspMAI CTGCAG 2 cut(s) 349, 373
BssMI GATC 3 cut(s) 9, 234, 303
Bst4CI ACNGT 3 cut(s) 181, 190, 250
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 84, 195, 294, 321
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 3 cut(s) 12, 237, 306
BstMBI GATC 3 cut(s) 9, 234, 303
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 345, 369
BstV1I GCAGC 4 cut(s) 142, 331, 355, 359
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 138, 177
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 237
Csp6I GTAC 2 cut(s) 124, 136
CviAII CATG 3 cut(s) 31, 127, 238
CviJI RGCY 8 cut(s) 41, 170, 216, 293, 344, 350, 368, 377
CviKI_1 RGCY 8 cut(s) 41, 170, 216, 293, 344, 350, 368, 377
CviQI GTAC 2 cut(s) 124, 136
DdeI CTNAG 4 cut(s) 84, 195, 294, 321
DpnI GATC 3 cut(s) 11, 236, 305
DpnII GATC 3 cut(s) 9, 234, 303
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 256
EcoRV GATATC 1 cut(s) 256
FaeI CATG 3 cut(s) 34, 130, 241
FaiI YATR 3 cut(s) 32, 128, 239
FatI CATG 3 cut(s) 30, 126, 237
Fnu4HI GCNGC 4 cut(s) 131, 345, 348, 369
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 131, 345, 348, 369
FspBI CTAG 2 cut(s) 161, 391
GluI GCNGC 4 cut(s) 131, 345, 348, 369
Hin1II CATG 3 cut(s) 34, 130, 241
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 3 cut(s) 61, 67, 266
HpaI GTTAAC 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 25, 138
Hpy188I TCNGA 2 cut(s) 66, 322
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 25, 138
HpyAV CCTTC 2 cut(s) 11, 355
HpyCH4III ACNGT 3 cut(s) 181, 190, 250
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 5 cut(s) 130, 158, 286, 347, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 4 cut(s) 84, 195, 294, 321
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 34, 130, 241
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 9, 234, 303
LpnPI CCDG 2 cut(s) 65, 294
Lsp1109I GCAGC 4 cut(s) 142, 331, 355, 359
MaeI CTAG 2 cut(s) 161, 391
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 184
MalI GATC 3 cut(s) 11, 236, 305
MboI GATC 3 cut(s) 9, 234, 303
MboII GAAGA 7 cut(s) 17, 67, 70, 91, 217, 244, 368
MluCI AATT 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 114, 358
MseI TTAA 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 3 cut(s) 9, 234, 303
NlaIII CATG 3 cut(s) 34, 130, 241
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 237
PfeI GAWTC 3 cut(s) 61, 67, 266
PkrI GCNGC 4 cut(s) 132, 346, 349, 370
PstI CTGCAG 2 cut(s) 349, 373
RsaI GTAC 2 cut(s) 125, 137
RsaNI GTAC 2 cut(s) 124, 136
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 4 cut(s) 131, 345, 348, 369
Sau3AI GATC 3 cut(s) 9, 234, 303
SetI ASST 4 cut(s) 108, 125, 295, 352
SfcI CTRYAG 2 cut(s) 345, 369
Sse9I AATT 1 cut(s) 149
SspMI CTAG 2 cut(s) 161, 391
TaaI ACNGT 3 cut(s) 181, 190, 250
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 147, 245
TasI AATT 1 cut(s) 149
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 3 cut(s) 61, 67, 266
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 2 cut(s) 145, 184
TseI GCWGC 4 cut(s) 130, 344, 347, 368
TspDTI ATGAA 3 cut(s) 47, 348, 369
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 145, 184
XceI RCATGY 1 cut(s) 130
XspI CTAG 2 cut(s) 161, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.