Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002909

Physical Location & Seq

Genomic Coordinates Forward (+)

2225157 .. 2227384

Gene Structure 2228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G031300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGCGAGTGTAGCTGTTGTTGCAGAGGAGCTCAAGGCCATGGAGATAGCGAAGCCTGTTGTTGTTGGTGATGATGGTGGCGAGGCCAAGAACGCTGCTACTGCTGATATCGCTGCTACTGCTGCTGAGTCTCAGAAGAAGACGAAGAAGATGAACAAGAACCGAATTCATGTTTCCAACTCCAAGCGACCTTTCCTCTTCTACTGCAATCTTGCCAAGAGGTACATCAAGCAGTACAATTCTGTTGAGCTCTTTGCCTTGGGCATGGCTATTCCTACTGTGATCACAATTGCTGAGACTCTCAAAAGGAATGGACTGGCTGTTGAAAAGAAGATAAGCACCTGTACTGTTGTCTCAAAGCTGGTGGATGTTGAAAATGGACGGATTGTTCTCAAGGCTCAGATTGCGATTTTGCTGGAAAAAGCTGAGAATATAGAGGAGACCGCTGTTGCTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba

Protein Analysis

155

Amino Acids

16.58

Weight (kDa)

9.04

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29250 AT2G34160
fragaria_vesca	FvH4_2g29410 FvH4_6g30150
malus_domestica	MD02G1299500.v1.1 MD08G1147300.v1.1 MD08G1188700.v1.1 MD09G1220100.v1.1 MD15G1123300.v1.1 MD15G1378600.v1.1 MD16G1209300.v1.1 MD17G1207900.v1.1
prunus_persica	Prupe.1G031300_v2.0.a1 Prupe.1G478700_v2.0.a1 Prupe.3G082200_v2.0.a1
pyrus_communis	pycom08g12430 pycom09g13850 pycom15g11110 pycom16g17660 pycom17g21040
rosa_chinensis	RchiOBHm_Chr2g0136361 RchiOBHm_Chr6g0298211
rosa_laevigata	RLG00000011526 RLG00000019523 RLG00000032843
rosa_multiflora	Rmu_sc0001998.1_g000029 Rmu_sc0017507.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108370 Rroxscaffold_7G00169860
rosa_rugosa	Rorug02G0329300 Rorug06G0279600
rosa_samantha	Rh1BG155300 Rh2BG387600 Rh2CG366600 Rh6AG389800 Rh6DG390800
rosa_wichuraiana	Rw2G031140 Rw6G034030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	3 cut(s)	227, 239, 349
AgsI	TTSAA	2 cut(s)	329, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	5 cut(s)	17, 34, 253, 364, 428
AluI	AGCT	5 cut(s)	17, 34, 253, 364, 428
Alw21I	GWGCWC	2 cut(s)	36, 255
Alw26I	GTCTC	4 cut(s)	138, 293, 361, 437
AoxI	GGCC	2 cut(s)	39, 87
ApeKI	GCWGC	5 cut(s)	98, 116, 125, 455, 458
ApoI	RAATTY	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	36, 255
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	2 cut(s)	36, 255
BbvI	GCAGC	4 cut(s)	85, 103, 112, 442
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	4 cut(s)	138, 293, 361, 437
BfmI	CTRYAG	1 cut(s)	456
BisI	GCNGC	5 cut(s)	99, 117, 126, 456, 459
BlsI	GCNGC	5 cut(s)	100, 118, 127, 457, 460
BpiI	GAAGAC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	20, 380
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	42, 261
Bse1I	ACTGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	42, 261
BseGI	GGATG	1 cut(s)	376
BseMII	CTCAG	5 cut(s)	120, 149, 288, 416, 420
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	44, 455
BseXI	GCAGC	4 cut(s)	85, 103, 112, 442
BshFI	GGCC	2 cut(s)	41, 89
BsiHKAI	GWGCWC	2 cut(s)	36, 255
BsmAI	GTCTC	4 cut(s)	138, 293, 361, 437
BsnI	GGCC	2 cut(s)	41, 89
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	36, 255
Bsp143I	GATC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	2 cut(s)	41, 89
BspCNI	CTCAG	5 cut(s)	121, 148, 289, 415, 421
BspMAI	CTGCAG	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	42, 261
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	42, 261
Bst4CI	ACNGT	2 cut(s)	283, 352
Bst6I	CTCTTC	1 cut(s)	206
BstDEI	CTNAG	5 cut(s)	129, 135, 297, 402, 429
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	4 cut(s)	138, 293, 361, 437
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 23, 95, 104, 113, 122, 125, 407, 455
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	4 cut(s)	85, 103, 112, 442
BstV2I	GAAGAC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	41, 89
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	226, 238, 348
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	4 cut(s)	43, 173, 268, 462
CviQI	GTAC	3 cut(s)	226, 238, 348
DdeI	CTNAG	5 cut(s)	129, 135, 297, 402, 429
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Ecl136II	GAGCTC	2 cut(s)	34, 253
Eco130I	CCWWGG	2 cut(s)	42, 261
Eco24I	GRGCYC	2 cut(s)	36, 255
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	34, 253
EcoICRI	GAGCTC	2 cut(s)	34, 253
EcoRI	GAATTC	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	42, 261
EcoT38I	GRGCYC	2 cut(s)	36, 255
ErhI	CCWWGG	2 cut(s)	42, 261
FaeI	CATG	4 cut(s)	46, 176, 271, 465
FaiI	YATR	5 cut(s)	44, 174, 269, 437, 463
FatI	CATG	4 cut(s)	42, 172, 267, 461
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	99, 117, 126, 456, 459
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	2 cut(s)	36, 255
Fsp4HI	GCNGC	5 cut(s)	99, 117, 126, 456, 459
GluI	GCNGC	5 cut(s)	99, 117, 126, 456, 459
HaeIII	GGCC	2 cut(s)	41, 89
Hin1II	CATG	4 cut(s)	46, 176, 271, 465
HinfI	GANTC	2 cut(s)	131, 301
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	138, 405
HpyCH4III	ACNGT	2 cut(s)	283, 352
HpyCH4V	TGCA	3 cut(s)	26, 210, 458
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 23, 95, 104, 113, 122, 125, 407, 455
HpyF3I	CTNAG	5 cut(s)	129, 135, 297, 402, 429
Hsp92II	CATG	4 cut(s)	46, 176, 271, 465
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	5 cut(s)	72, 305, 350, 358, 404
Lsp1109I	GCAGC	4 cut(s)	85, 103, 112, 442
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	6 cut(s)	151, 154, 160, 163, 193, 346
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	2 cut(s)	36, 255
MluCI	AATT	3 cut(s)	168, 241, 291
MlyI	GAGTC	2 cut(s)	140, 295
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	22, 79, 209, 216, 433
MspA1I	CMGCKG	1 cut(s)	449
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	9 cut(s)	14, 23, 95, 104, 113, 122, 125, 407, 455
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	4 cut(s)	46, 176, 271, 465
PkrI	GCNGC	5 cut(s)	100, 118, 127, 457, 460
PleI	GAGTC	2 cut(s)	139, 295
PpsI	GAGTC	2 cut(s)	139, 295
Psp124BI	GAGCTC	2 cut(s)	36, 255
PstI	CTGCAG	1 cut(s)	460
RsaI	GTAC	3 cut(s)	227, 239, 349
RsaNI	GTAC	3 cut(s)	226, 238, 348
SacI	GAGCTC	2 cut(s)	36, 255
SatI	GCNGC	5 cut(s)	99, 117, 126, 456, 459
Sau3AI	GATC	1 cut(s)	285
SchI	GAGTC	2 cut(s)	140, 295
SduI	GDGCHC	2 cut(s)	36, 255
SetI	ASST	8 cut(s)	19, 36, 196, 227, 255, 347, 366, 430
SfcI	CTRYAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	35, 395
SmoI	CTYRAG	2 cut(s)	35, 395
Sse9I	AATT	3 cut(s)	168, 241, 291
SsiI	CCGC	1 cut(s)	447
SstI	GAGCTC	2 cut(s)	36, 255
StyI	CCWWGG	2 cut(s)	42, 261
TaaI	ACNGT	2 cut(s)	283, 352
TasI	AATT	3 cut(s)	168, 241, 291
TatI	WGTACW	2 cut(s)	237, 347
TseI	GCWGC	5 cut(s)	98, 116, 125, 455, 458
TspDTI	ATGAA	2 cut(s)	161, 170
TspGWI	ACGGA	1 cut(s)	400
XapI	RAATTY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.